Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270111019421/wq3003sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270111019421/wq3003Isup2.hkl |
CCDC reference: 816902
For related literature, see: Baggio et al. (1972); Cottram & Steel (2006); Dean et al. (2004); Goh et al. (2008); Huang et al. (2004); Li et al. (2008); Long et al. (2000); Matsuzawa et al. (1987); Novitchi et al. (2010); Ramírez et al. (1998); Shimi et al. (1982); Steed et al. (2003); Wells (1984); Xian et al. (2005); Young & Hanton (2008).
Crystals of (Ag–SP-DNC)∞, (I), were obtained from the reaction of DNC and AgNO3 (1:1 molar ratio) in water at room temperature. Elemental analysis for (I), calculated: C 31.09, H 2.94, O 31.06%; found: C 31.01, H 3.05, O 31.24%.
All H atoms were found in a difference map and refined isotropically. The water H atoms were disordered over two positions, which were determined from the difference Fourier map and modelled with site-occupancy factors from refinement of 0.837 (2) (for H8 and H9) and 0.163 (2) (for H8A and H9A).
Data collection: SMART (Bruker, 2000); cell refinement: SMART (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
[Ag(C8H7O5)]·H2O | F(000) = 608.0 |
Mr = 309.02 | Dx = 2.346 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 380 reflections |
a = 9.885 (2) Å | θ = 2.5–28.3° |
b = 7.0011 (15) Å | µ = 2.31 mm−1 |
c = 12.746 (3) Å | T = 298 K |
β = 97.280 (3)° | Block, colourless |
V = 874.9 (3) Å3 | 0.32 × 0.27 × 0.12 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 1995 independent reflections |
Radiation source: fine-focus sealed tube | 1868 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −13→12 |
Tmin = 0.482, Tmax = 0.758 | k = −7→9 |
4990 measured reflections | l = −11→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.080 | w = 1/[σ2(Fo2) + (0.0475P)2 + 0.2021P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
1995 reflections | Δρmax = 0.87 e Å−3 |
164 parameters | Δρmin = −0.95 e Å−3 |
6 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0130 (12) |
[Ag(C8H7O5)]·H2O | V = 874.9 (3) Å3 |
Mr = 309.02 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.885 (2) Å | µ = 2.31 mm−1 |
b = 7.0011 (15) Å | T = 298 K |
c = 12.746 (3) Å | 0.32 × 0.27 × 0.12 mm |
β = 97.280 (3)° |
Bruker SMART CCD area-detector diffractometer | 1995 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1868 reflections with I > 2σ(I) |
Tmin = 0.482, Tmax = 0.758 | Rint = 0.039 |
4990 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 6 restraints |
wR(F2) = 0.080 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.87 e Å−3 |
1995 reflections | Δρmin = −0.95 e Å−3 |
164 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ag1 | 0.42686 (2) | 0.47589 (3) | 0.859527 (16) | 0.02830 (13) | |
O1 | 0.26789 (17) | 0.2554 (3) | 0.68466 (14) | 0.0245 (4) | |
O2 | 0.2957 (2) | −0.1098 (3) | 0.54062 (16) | 0.0330 (5) | |
O3 | 0.3032 (3) | 0.0244 (3) | 0.38335 (18) | 0.0323 (5) | |
H7 | 0.2515 | −0.0729 | 0.3615 | 0.078 (16)* | |
O4 | 0.0788 (2) | 0.4234 (3) | 0.37832 (18) | 0.0366 (5) | |
O5 | 0.06616 (19) | 0.1838 (3) | 0.48871 (15) | 0.0284 (4) | |
C1 | 0.2524 (3) | 0.4381 (4) | 0.6326 (2) | 0.0232 (5) | |
H1 | 0.1729 | 0.4954 | 0.6443 | 0.037 (11)* | |
C2 | 0.2635 (2) | 0.3839 (3) | 0.5156 (2) | 0.0192 (5) | |
C3 | 0.3691 (3) | 0.2182 (4) | 0.5327 (2) | 0.0208 (5) | |
C4 | 0.4006 (3) | 0.2119 (4) | 0.6552 (2) | 0.0221 (5) | |
C5 | 0.4791 (3) | 0.3919 (4) | 0.6885 (2) | 0.0240 (5) | |
C6 | 0.3867 (3) | 0.5341 (4) | 0.6741 (2) | 0.0227 (5) | |
C7 | 0.1258 (3) | 0.3281 (3) | 0.45580 (19) | 0.0210 (5) | |
C8 | 0.3176 (3) | 0.0280 (4) | 0.4884 (2) | 0.0233 (6) | |
O6 | 0.3323 (2) | 0.2410 (3) | 0.19795 (17) | 0.0380 (5) | |
H8 | 0.3522 | 0.2190 | 0.1316 | 0.006 (5)* | 0.84 (4) |
H9 | 0.3279 | 0.1862 | 0.2552 | 0.007 (5)* | 0.84 (4) |
H8A | 0.3685 | 0.1253 | 0.1709 | 0.007 (5)* | 0.16 (4) |
H9A | 0.2596 | 0.1960 | 0.1853 | 0.007 (5)* | 0.16 (4) |
H2 | 0.304 (3) | 0.484 (4) | 0.486 (3) | 0.023 (9)* | |
H3 | 0.443 (3) | 0.243 (5) | 0.501 (2) | 0.025 (7)* | |
H4 | 0.434 (3) | 0.100 (4) | 0.688 (2) | 0.013 (6)* | |
H5 | 0.570 (3) | 0.404 (4) | 0.695 (2) | 0.024 (7)* | |
H6 | 0.398 (3) | 0.665 (5) | 0.669 (2) | 0.027 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ag1 | 0.03320 (18) | 0.03385 (18) | 0.01679 (17) | 0.00838 (8) | −0.00093 (10) | −0.00330 (7) |
O1 | 0.0273 (9) | 0.0275 (10) | 0.0196 (9) | −0.0034 (7) | 0.0069 (7) | 0.0010 (8) |
O2 | 0.0486 (12) | 0.0223 (10) | 0.0279 (11) | 0.0008 (8) | 0.0038 (9) | 0.0035 (8) |
O3 | 0.0528 (14) | 0.0264 (10) | 0.0186 (11) | −0.0049 (9) | 0.0081 (10) | −0.0049 (8) |
O4 | 0.0402 (12) | 0.0331 (11) | 0.0318 (12) | −0.0087 (9) | −0.0138 (9) | 0.0117 (10) |
O5 | 0.0310 (10) | 0.0292 (10) | 0.0237 (10) | −0.0098 (8) | −0.0009 (8) | 0.0032 (8) |
C1 | 0.0223 (12) | 0.0253 (13) | 0.0217 (13) | 0.0057 (10) | 0.0015 (10) | −0.0057 (11) |
C2 | 0.0225 (11) | 0.0170 (11) | 0.0179 (11) | −0.0003 (9) | 0.0018 (9) | 0.0016 (9) |
C3 | 0.0241 (12) | 0.0214 (11) | 0.0177 (12) | 0.0006 (9) | 0.0058 (10) | −0.0006 (10) |
C4 | 0.0268 (13) | 0.0207 (12) | 0.0184 (12) | 0.0051 (10) | 0.0009 (10) | 0.0005 (10) |
C5 | 0.0231 (13) | 0.0292 (14) | 0.0196 (12) | 0.0005 (10) | 0.0028 (10) | −0.0026 (11) |
C6 | 0.0294 (14) | 0.0211 (12) | 0.0170 (13) | −0.0017 (10) | 0.0006 (11) | −0.0013 (9) |
C7 | 0.0273 (12) | 0.0179 (11) | 0.0178 (12) | 0.0011 (9) | 0.0030 (10) | −0.0030 (9) |
C8 | 0.0265 (14) | 0.0225 (13) | 0.0216 (15) | 0.0041 (9) | 0.0053 (11) | −0.0019 (10) |
O6 | 0.0562 (14) | 0.0284 (10) | 0.0295 (11) | 0.0069 (10) | 0.0060 (10) | 0.0059 (9) |
Ag1—O5i | 2.2985 (19) | C1—C2 | 1.556 (4) |
Ag1—C5 | 2.377 (3) | C1—H1 | 0.9107 |
Ag1—C6 | 2.381 (3) | C2—C7 | 1.525 (3) |
Ag1—O5ii | 2.4149 (19) | C2—C3 | 1.557 (3) |
Ag1—O2ii | 2.744 (2) | C2—H2 | 0.91 (3) |
Ag1—O1ii | 2.7529 (18) | C3—C8 | 1.509 (3) |
O1—C1 | 1.440 (3) | C3—C4 | 1.554 (3) |
O1—C4 | 1.442 (3) | C3—H3 | 0.90 (3) |
O1—Ag1iii | 2.7529 (18) | C4—C5 | 1.512 (4) |
O2—C8 | 1.207 (3) | C4—H4 | 0.93 (3) |
O2—Ag1iii | 2.744 (2) | C5—C6 | 1.348 (4) |
O3—C8 | 1.329 (4) | C5—H5 | 0.90 (3) |
O3—H7 | 0.8760 | C6—H6 | 0.93 (3) |
O4—C7 | 1.233 (3) | O6—H8 | 0.9060 |
O5—C7 | 1.268 (3) | O6—H9 | 0.8300 |
O5—Ag1iv | 2.2985 (19) | O6—H8A | 0.9670 |
O5—Ag1iii | 2.4149 (19) | O6—H9A | 0.7824 |
C1—C6 | 1.522 (4) | ||
O5i—Ag1—C5 | 110.88 (8) | C8—C3—C2 | 114.6 (2) |
O5i—Ag1—C6 | 143.47 (8) | C4—C3—C2 | 101.92 (19) |
C5—Ag1—C6 | 32.91 (9) | C8—C3—H3 | 105 (2) |
O5i—Ag1—O5ii | 76.45 (7) | C4—C3—H3 | 112.9 (19) |
C5—Ag1—O5ii | 153.66 (8) | C2—C3—H3 | 111 (2) |
C6—Ag1—O5ii | 132.53 (8) | O1—C4—C5 | 101.68 (19) |
O5i—Ag1—O2ii | 90.23 (7) | O1—C4—C3 | 100.51 (19) |
C5—Ag1—O2ii | 130.65 (8) | C5—C4—C3 | 106.8 (2) |
C6—Ag1—O2ii | 117.07 (8) | O1—C4—H4 | 109.8 (16) |
O5ii—Ag1—O2ii | 72.76 (6) | C5—C4—H4 | 115.9 (17) |
O5i—Ag1—O1ii | 146.34 (6) | C3—C4—H4 | 119.6 (18) |
C5—Ag1—O1ii | 102.47 (8) | C6—C5—C4 | 105.2 (2) |
C6—Ag1—O1ii | 69.58 (8) | C6—C5—Ag1 | 73.70 (16) |
O5ii—Ag1—O1ii | 71.55 (6) | C4—C5—Ag1 | 107.46 (16) |
O2ii—Ag1—O1ii | 70.70 (6) | C6—C5—H5 | 127 (2) |
C1—O1—C4 | 96.61 (17) | C4—C5—H5 | 125 (2) |
C1—O1—Ag1iii | 120.41 (14) | Ag1—C5—H5 | 103 (2) |
C4—O1—Ag1iii | 115.61 (14) | C5—C6—C1 | 105.5 (2) |
C8—O2—Ag1iii | 106.90 (17) | C5—C6—Ag1 | 73.39 (16) |
C8—O3—H7 | 108.6 | C1—C6—Ag1 | 107.33 (17) |
C7—O5—Ag1iv | 114.34 (16) | C5—C6—H6 | 130.8 (19) |
C7—O5—Ag1iii | 141.10 (17) | C1—C6—H6 | 121.5 (19) |
Ag1iv—O5—Ag1iii | 103.55 (7) | Ag1—C6—H6 | 103.1 (19) |
O1—C1—C6 | 101.2 (2) | O4—C7—O5 | 123.6 (2) |
O1—C1—C2 | 102.05 (19) | O4—C7—C2 | 118.9 (2) |
C6—C1—C2 | 106.0 (2) | O5—C7—C2 | 117.5 (2) |
O1—C1—H1 | 111.1 | O2—C8—O3 | 122.5 (3) |
C6—C1—H1 | 118.8 | O2—C8—C3 | 125.1 (3) |
C2—C1—H1 | 115.5 | O3—C8—C3 | 112.4 (2) |
C7—C2—C1 | 112.0 (2) | H8—O6—H9 | 141.6 |
C7—C2—C3 | 114.8 (2) | H8—O6—H8A | 52.4 |
C1—C2—C3 | 100.11 (19) | H9—O6—H8A | 89.3 |
C7—C2—H2 | 114 (2) | H8—O6—H9A | 92.4 |
C1—C2—H2 | 107 (2) | H9—O6—H9A | 81.1 |
C3—C2—H2 | 108 (2) | H8A—O6—H9A | 87.7 |
C8—C3—C4 | 111.5 (2) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+1/2, y+1/2, −z+3/2; (iii) −x+1/2, y−1/2, −z+3/2; (iv) x−1/2, −y+1/2, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H7···O6v | 0.88 | 1.67 | 2.540 (3) | 170 |
C6—H6···O2vi | 0.93 (3) | 2.40 (3) | 3.087 (3) | 130 (2) |
C1—H1···O4vii | 0.91 | 2.53 | 3.400 (4) | 159 |
Symmetry codes: (v) −x+1/2, y−1/2, −z+1/2; (vi) x, y+1, z; (vii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Ag(C8H7O5)]·H2O |
Mr | 309.02 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 9.885 (2), 7.0011 (15), 12.746 (3) |
β (°) | 97.280 (3) |
V (Å3) | 874.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.31 |
Crystal size (mm) | 0.32 × 0.27 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.482, 0.758 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4990, 1995, 1868 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.080, 1.05 |
No. of reflections | 1995 |
No. of parameters | 164 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.87, −0.95 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008).
Ag1—O5i | 2.2985 (19) | Ag1—O5ii | 2.4149 (19) |
Ag1—C5 | 2.377 (3) | Ag1—O2ii | 2.744 (2) |
Ag1—C6 | 2.381 (3) | Ag1—O1ii | 2.7529 (18) |
O5i—Ag1—C5 | 110.88 (8) | O5ii—Ag1—O1ii | 71.55 (6) |
O5i—Ag1—C6 | 143.47 (8) | O2ii—Ag1—O1ii | 70.70 (6) |
C5—Ag1—C6 | 32.91 (9) | C1—O1—Ag1iii | 120.41 (14) |
O5i—Ag1—O5ii | 76.45 (7) | C4—O1—Ag1iii | 115.61 (14) |
C5—Ag1—O5ii | 153.66 (8) | C8—O2—Ag1iii | 106.90 (17) |
C6—Ag1—O5ii | 132.53 (8) | C7—O5—Ag1iv | 114.34 (16) |
O5i—Ag1—O2ii | 90.23 (7) | C7—O5—Ag1iii | 141.10 (17) |
C5—Ag1—O2ii | 130.65 (8) | Ag1iv—O5—Ag1iii | 103.55 (7) |
C6—Ag1—O2ii | 117.07 (8) | C6—C5—Ag1 | 73.70 (16) |
O5ii—Ag1—O2ii | 72.76 (6) | C4—C5—Ag1 | 107.46 (16) |
O5i—Ag1—O1ii | 146.34 (6) | C5—C6—Ag1 | 73.39 (16) |
C5—Ag1—O1ii | 102.47 (8) | C1—C6—Ag1 | 107.33 (17) |
C6—Ag1—O1ii | 69.58 (8) |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) −x+1/2, y+1/2, −z+3/2; (iii) −x+1/2, y−1/2, −z+3/2; (iv) x−1/2, −y+1/2, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H7···O6v | 0.88 | 1.67 | 2.540 (3) | 170.2 |
C6—H6···O2vi | 0.93 (3) | 2.40 (3) | 3.087 (3) | 130 (2) |
C1—H1···O4vii | 0.91 | 2.53 | 3.400 (4) | 159.3 |
Symmetry codes: (v) −x+1/2, y−1/2, −z+1/2; (vi) x, y+1, z; (vii) −x, −y+1, −z+1. |
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As an important derivative of cantharidin, 7-oxabicyclo[2.2.1]hept-5-ene-2,3-exo-dicarboxylic anhydride (dehydronorcantharidin, hereinafter DNC) is effective in inhibiting the growth of tumour cells (Xian et al., 2005; Shimi et al., 1982) and sensitizing tumours to chemotherapy (Li et al., 2008). The crystal structure of DNC has been reported three times so far (Baggio et al., 1972; Ramírez et al., 1998; Goh et al., 2008), but the structures of its metal complexes have not yet been reported. Many metal complexes are known to have antimicrobial or antineoplastic activities. We have synthesized some such complexes based on DNC, and this article describes the crystal structure of the title silver complex, (Ag–SP-DNC)∞, (I), which is a coordination polymer built from Ag+ cations and singly protonated DNC anions (abbreviated as SP-DNC) with a novel two-dimensional (4,82) noninterpenetrating framework.
As shown in Fig. 1, each SP-DNC anion binds one Ag+ cation via C═C at one end and two Ag+ cations via carboxyl atom O5 at the other end. Meanwhile, each Ag+ cation is coordinated to three SP-DNC anions to give rise to a two-dimensional network. Of these three SP-DNC anions, two provide two O atoms and the third contributes a C═C bond, with Ag—C distances of 2.377 (3) and 2.381 (3)Å. These are short and nearly equal, suggesting a strong interaction between the Ag+ cation and the π orbital of the double bond (Fig. 2a). Customarily, the Ag—π interaction is considered as a single coordination site (Cottram & Steel, 2006), so the coordination number is 3. Rather than a severely distorted triangular pyramid geometry, the coordination environment of Ag+ is more like a distorted trigonal-planar geometry, for the distance between Ag+ and the least-squares plane through the coordinated atoms C5, C6, O5(x + 1/2, -y + 1/2, z + 1/2) and O5(-x + 1/2, y + 1/2, -z + 3/2) is only 0.3993 (5) Å.
Apart from the three-membered ring constructed by Ag+ and C═C, there are two types of chelating rings around the Ag+ cations. Two SP-DNC-bridged Ag+ cations, together with the two bridging O5 atoms, form a four-membered ring with an Ag···Ag nonbonding distance of 3.7035 (8) Å. Four Ag+ cations and four SP-DNC anions link together to form 24-membered rings. If each SP-DNC anion around the Ag+ cation is simplified as a node, then the Ag+ cation can be simplified as a 3-connecting node, and the coordination polymer has a two-dimensional (4,82) net that extends along the bc plane of the unit cell (Fig. 2b). This type of net consists of three connected nodes shared by one tetragonal square unit and two octagons, as predicted by Wells (1984) and first observed by Schröder and co-workers in 2000 (Long et al., 2000).
In the above analysis we described a three-coordinated Ag+ cation in which the Ag—µ-O (both O5) bond lengths are 2.299 (2) and 2.415 (2) Å. However, we could also include longer, weaker, interactions between Ag and O (Huang et al., 2004; Young & Hanton, 2008; Steed et al., 2003; Novitchi et al., 2010; Dean et al., 2004) and regard both O1 and O2 as also being coordinated to Ag+, with bond lengths of 2.753 (2) and 2.744 (2) Å, respectively. Thus, the coordination number of Ag+ would become 5, but still with three SP-DNC anions: one provides C═C, the second gives three O atoms (O1, O2 and O5) and the third gives one O atom (O5). This kind of coordination mode was predicated by Casida and co-workers in 1987 (Matsuzawa et al., 1987) and this is the first example, to the best of our knowledge. The two-dimensional net has a vertex symbol (3.20.6.7.9.20), but is still (4.82) if the SP-DNC anion is simplified as a node, as mentioned above.
The coordination polymer produces an extended two-dimensional zigzag-type architecture in which water molecules are sandwiched between two undulating tapes (Fig. 3). The distance between two adjacent tapes is 12.746 (3) Å and the water molecules occupy the centre of the void space between these tapes. The two tapes are held together via hydrogen bonds between them and the water molecules (Table 2). The water H atoms were found to be disordered over two positions, which were determined from the difference Fourier map and modelled with site-occupancy factors from refinement of 0.837 (2) (for H8 and H9) and 0.163 (2) (for H8A and H9A). Splitting the occupancies of the H atoms reduced the final R and Uiso values.