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Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536811020733/qm2009sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536811020733/qm2009Isup2.hkl |
![]() | Chemical Markup Language (CML) file https://doi.org/10.1107/S1600536811020733/qm2009Isup3.cml |
CCDC reference: 834320
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean
(C-C) = 0.002 Å
- Disorder in main residue
- R factor = 0.046
- wR factor = 0.115
- Data-to-parameter ratio = 14.3
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT042_ALERT_1_C Calc. and Reported MoietyFormula Strings Differ ? PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 2.00 Ratio PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.51 PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.65 PLAT910_ALERT_3_C Missing # of FCF Reflections Below Th(Min) ..... 2 PLAT911_ALERT_3_C Missing # FCF Refl Between THmin & STh/L= 0.600 6 PLAT913_ALERT_3_C Missing # of Very Strong Reflections in FCF .... 2
Alert level G PLAT003_ALERT_2_G Number of Uiso or Uij Restrained Atom Sites .... 4 PLAT194_ALERT_1_G Missing _cell_measurement_reflns_used datum .... ? PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature 293 K PLAT242_ALERT_2_G Check Low Ueq as Compared to Neighbors for C4 PLAT242_ALERT_2_G Check Low Ueq as Compared to Neighbors for C4' PLAT301_ALERT_3_G Note: Main Residue Disorder ................... 10 Perc. PLAT432_ALERT_2_G Short Inter X...Y Contact C6 .. C6 .. 3.15 Ang. PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 5 PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF .... # 12 C4' -C3 -C4 1.555 1.555 1.555 35.90 Deg. PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 3
0 ALERT level A = Most likely a serious problem - resolve or explain 0 ALERT level B = A potentially serious problem, consider carefully 7 ALERT level C = Check. Ensure it is not caused by an omission or oversight 11 ALERT level G = General information/check it is not something unexpected 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of 2 - ethyl imidazole (2.4 g, 25 mmol), oxalic acid (3.15 g, 25 mmol) in water was stirred for several days at ambient temperature, Colourless sheet crystals were obtained.
Positional parameter of all the H atoms except for H7A and H7B were calculated geometrically and the H atoms were set to ride on the C atoms to which they are bonded, with Uiso(H) =1.2Ueq(C). The H7A and H7B on the O7 was freely refined.
Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C5H9N2+·0.5C2O42−·C2H2O4·H2O | Z = 4 |
Mr = 249.20 | F(000) = 524.0 |
Monoclinic, P21/c | Dx = 1.444 Mg m−3 |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 6.971 (3) Å | θ = 2.3–27.5° |
b = 15.716 (7) Å | µ = 0.13 mm−1 |
c = 10.484 (4) Å | T = 293 K |
β = 93.736 (8)° | Prism, colourless |
V = 1146.1 (8) Å3 | 0.30 × 0.25 × 0.20 mm |
Rigaku SCXmini diffractometer | 2614 independent reflections |
Radiation source: fine-focus sealed tube | 2192 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
CCD_Profile_fitting scans | θmax = 27.5°, θmin = 2.9° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | h = −9→9 |
Tmin = 0.962, Tmax = 0.975 | k = −20→20 |
12371 measured reflections | l = −13→13 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.115 | w = 1/[σ2(Fo2) + (0.0549P)2 + 0.3631P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
2614 reflections | Δρmax = 0.35 e Å−3 |
183 parameters | Δρmin = −0.44 e Å−3 |
3 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008) |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0 |
C5H9N2+·0.5C2O42−·C2H2O4·H2O | V = 1146.1 (8) Å3 |
Mr = 249.20 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.971 (3) Å | µ = 0.13 mm−1 |
b = 15.716 (7) Å | T = 293 K |
c = 10.484 (4) Å | 0.30 × 0.25 × 0.20 mm |
β = 93.736 (8)° |
Rigaku SCXmini diffractometer | 2614 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 2192 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.975 | Rint = 0.039 |
12371 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 3 restraints |
wR(F2) = 0.115 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.35 e Å−3 |
2614 reflections | Δρmin = −0.44 e Å−3 |
183 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.1308 (3) | 0.28168 (12) | 0.2483 (2) | 0.0343 (4) | |
H1 | 0.0466 | 0.3066 | 0.3025 | 0.041* | |
C2 | 0.1140 (3) | 0.20420 (12) | 0.1945 (2) | 0.0364 (5) | |
H2 | 0.0158 | 0.1652 | 0.2044 | 0.044* | |
C3 | 0.3798 (4) | 0.26258 (12) | 0.1326 (2) | 0.0475 (6) | |
C6 | 0.2852 (2) | 0.51305 (9) | 0.44765 (14) | 0.0159 (3) | |
C7 | 0.1981 (2) | 0.55010 (10) | 0.56719 (14) | 0.0181 (3) | |
C8 | 0.9398 (2) | 0.49850 (10) | 0.06011 (14) | 0.0169 (3) | |
N1 | 0.2691 (3) | 0.19373 (9) | 0.12234 (15) | 0.0358 (4) | |
H1B | 0.2914 | 0.1495 | 0.0774 | 0.043* | |
N2 | 0.2952 (2) | 0.31678 (9) | 0.20807 (16) | 0.0349 (4) | |
H2A | 0.3378 | 0.3666 | 0.2286 | 0.042* | |
O1 | 0.14141 (16) | 0.48966 (7) | 0.64012 (10) | 0.0203 (3) | |
H1A | 0.0967 | 0.5104 | 0.7036 | 0.031* | |
O2 | 0.1875 (2) | 0.62570 (8) | 0.58419 (13) | 0.0393 (4) | |
O3 | 0.31598 (17) | 0.43711 (7) | 0.43807 (10) | 0.0212 (3) | |
O4 | 0.32172 (16) | 0.57027 (7) | 0.36275 (10) | 0.0201 (3) | |
H4 | 0.3622 | 0.5469 | 0.2999 | 0.030* | |
O5 | 0.76442 (16) | 0.51317 (9) | 0.04421 (11) | 0.0278 (3) | |
O6 | 1.03061 (15) | 0.48204 (8) | 0.16451 (10) | 0.0218 (3) | |
O7 | 0.54960 (17) | 0.51036 (7) | 0.82209 (11) | 0.0202 (3) | |
H7A | 0.442 (4) | 0.5011 (14) | 0.852 (2) | 0.042 (6)* | |
H7B | 0.631 (4) | 0.5075 (15) | 0.890 (3) | 0.054 (7)* | |
C4 | 0.5878 (6) | 0.2787 (2) | 0.0900 (3) | 0.0317 (8) | 0.655 (6) |
H4A | 0.6477 | 0.3251 | 0.1390 | 0.038* | 0.655 (6) |
H4B | 0.6659 | 0.2281 | 0.1040 | 0.038* | 0.655 (6) |
C5 | 0.5713 (5) | 0.3010 (2) | −0.0500 (3) | 0.0474 (11) | 0.655 (6) |
H5A | 0.6971 | 0.3114 | −0.0788 | 0.071* | 0.655 (6) |
H5B | 0.4938 | 0.3511 | −0.0627 | 0.071* | 0.655 (6) |
H5C | 0.5126 | 0.2546 | −0.0976 | 0.071* | 0.655 (6) |
C5' | 0.6915 (11) | 0.2936 (4) | 0.0908 (7) | 0.0416 (18) | 0.345 (6) |
H5'A | 0.7855 | 0.3046 | 0.0299 | 0.062* | 0.345 (6) |
H5'B | 0.7294 | 0.2445 | 0.1408 | 0.062* | 0.345 (6) |
H5'C | 0.6822 | 0.3419 | 0.1459 | 0.062* | 0.345 (6) |
C4' | 0.4958 (9) | 0.2770 (3) | 0.0199 (6) | 0.0285 (17) | 0.345 (6) |
H4'A | 0.4507 | 0.3258 | −0.0301 | 0.034* | 0.345 (6) |
H4'B | 0.4980 | 0.2272 | −0.0347 | 0.034* | 0.345 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0365 (10) | 0.0252 (9) | 0.0430 (11) | 0.0018 (7) | 0.0161 (9) | −0.0093 (8) |
C2 | 0.0340 (10) | 0.0249 (9) | 0.0510 (12) | 0.0005 (8) | 0.0089 (9) | −0.0090 (9) |
C3 | 0.0680 (14) | 0.0176 (8) | 0.0619 (14) | 0.0043 (8) | 0.0436 (12) | −0.0004 (9) |
C6 | 0.0147 (7) | 0.0181 (7) | 0.0152 (7) | −0.0011 (5) | 0.0025 (5) | 0.0011 (6) |
C7 | 0.0186 (7) | 0.0197 (8) | 0.0167 (7) | 0.0002 (6) | 0.0054 (6) | −0.0007 (6) |
C8 | 0.0158 (7) | 0.0207 (7) | 0.0148 (7) | 0.0004 (6) | 0.0047 (6) | −0.0005 (6) |
N1 | 0.0606 (11) | 0.0176 (7) | 0.0312 (8) | 0.0073 (6) | 0.0169 (8) | −0.0054 (6) |
N2 | 0.0422 (9) | 0.0179 (7) | 0.0466 (10) | 0.0011 (6) | 0.0166 (8) | −0.0085 (7) |
O1 | 0.0273 (6) | 0.0199 (6) | 0.0149 (5) | 0.0002 (4) | 0.0096 (4) | 0.0004 (4) |
O2 | 0.0628 (9) | 0.0165 (6) | 0.0427 (8) | 0.0004 (6) | 0.0359 (7) | −0.0034 (5) |
O3 | 0.0300 (6) | 0.0157 (5) | 0.0188 (6) | 0.0006 (4) | 0.0085 (5) | 0.0001 (4) |
O4 | 0.0275 (6) | 0.0173 (5) | 0.0166 (5) | 0.0009 (4) | 0.0089 (4) | 0.0024 (4) |
O5 | 0.0141 (6) | 0.0540 (8) | 0.0158 (6) | 0.0034 (5) | 0.0051 (4) | 0.0023 (5) |
O6 | 0.0172 (6) | 0.0350 (7) | 0.0134 (5) | 0.0028 (5) | 0.0037 (4) | 0.0025 (5) |
O7 | 0.0159 (6) | 0.0284 (6) | 0.0168 (6) | 0.0005 (5) | 0.0046 (5) | −0.0002 (5) |
C4 | 0.0362 (17) | 0.0220 (15) | 0.0368 (16) | 0.0076 (14) | 0.0020 (19) | −0.0043 (12) |
C5 | 0.051 (2) | 0.048 (2) | 0.0449 (17) | 0.0109 (16) | 0.0211 (17) | 0.0148 (16) |
C5' | 0.028 (4) | 0.037 (4) | 0.059 (4) | −0.001 (3) | −0.001 (3) | −0.014 (3) |
C4' | 0.036 (3) | 0.023 (3) | 0.028 (4) | 0.002 (2) | 0.010 (3) | −0.002 (2) |
C1—C2 | 1.344 (3) | N2—H2A | 0.8600 |
C1—N2 | 1.363 (3) | O1—H1A | 0.8200 |
C1—H1 | 0.9300 | O4—H4 | 0.8200 |
C2—N1 | 1.369 (2) | O7—H7A | 0.84 (3) |
C2—H2 | 0.9300 | O7—H7B | 0.88 (3) |
C3—N1 | 1.329 (3) | C4—C5 | 1.505 (5) |
C3—N2 | 1.327 (2) | C4—H4A | 0.9700 |
C3—C4' | 1.491 (6) | C4—H4B | 0.9700 |
C3—C4 | 1.565 (5) | C5—H5A | 0.9600 |
C6—O3 | 1.2179 (19) | C5—H5B | 0.9600 |
C6—O4 | 1.3022 (18) | C5—H5C | 0.9600 |
C6—C7 | 1.542 (2) | C5'—C4' | 1.532 (10) |
C7—O2 | 1.204 (2) | C5'—H5'A | 0.9600 |
C7—O1 | 1.2970 (19) | C5'—H5'B | 0.9600 |
C8—O5 | 1.2449 (19) | C5'—H5'C | 0.9600 |
C8—O6 | 1.2550 (19) | C4'—H4'A | 0.9700 |
C8—C8i | 1.559 (3) | C4'—H4'B | 0.9700 |
N1—H1B | 0.8600 | ||
C2—C1—N2 | 106.81 (16) | C7—O1—H1A | 109.5 |
C2—C1—H1 | 126.6 | C6—O4—H4 | 109.5 |
N2—C1—H1 | 126.6 | H7A—O7—H7B | 104 (2) |
C1—C2—N1 | 106.87 (17) | C5—C4—C3 | 107.6 (3) |
C1—C2—H2 | 126.6 | C5—C4—H4A | 110.2 |
N1—C2—H2 | 126.6 | C3—C4—H4A | 110.2 |
N1—C3—N2 | 106.99 (18) | C5—C4—H4B | 110.2 |
N1—C3—C4' | 113.7 (3) | C3—C4—H4B | 110.2 |
N2—C3—C4' | 131.3 (3) | H4A—C4—H4B | 108.5 |
N1—C3—C4 | 130.74 (19) | C4—C5—H5A | 109.5 |
N2—C3—C4 | 121.5 (2) | C4—C5—H5B | 109.5 |
C4'—C3—C4 | 35.9 (3) | H5A—C5—H5B | 109.5 |
O3—C6—O4 | 125.24 (14) | C4—C5—H5C | 109.5 |
O3—C6—C7 | 121.20 (13) | H5A—C5—H5C | 109.5 |
O4—C6—C7 | 113.55 (13) | H5B—C5—H5C | 109.5 |
O2—C7—O1 | 127.68 (14) | C4'—C5'—H5'A | 109.5 |
O2—C7—C6 | 121.60 (14) | C4'—C5'—H5'B | 109.5 |
O1—C7—C6 | 110.71 (13) | H5'A—C5'—H5'B | 109.5 |
O5—C8—O6 | 126.16 (14) | C4'—C5'—H5'C | 109.5 |
O5—C8—C8i | 117.49 (17) | H5'A—C5'—H5'C | 109.5 |
O6—C8—C8i | 116.35 (16) | H5'B—C5'—H5'C | 109.5 |
C3—N1—C2 | 109.44 (15) | C3—C4'—C5' | 98.8 (5) |
C3—N1—H1B | 125.3 | C3—C4'—H4'A | 112.0 |
C2—N1—H1B | 125.3 | C5'—C4'—H4'A | 112.0 |
C3—N2—C1 | 109.87 (16) | C3—C4'—H4'B | 112.0 |
C3—N2—H2A | 125.1 | C5'—C4'—H4'B | 112.0 |
C1—N2—H2A | 125.1 | H4'A—C4'—H4'B | 109.7 |
Symmetry code: (i) −x+2, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···O3ii | 0.86 | 2.01 | 2.855 (2) | 166 |
N1—H1B···O1ii | 0.86 | 2.53 | 3.026 (2) | 118 |
N2—H2A···O7iii | 0.86 | 2.17 | 2.949 (2) | 151 |
N2—H2A···O3 | 0.86 | 2.47 | 3.060 (2) | 126 |
O1—H1A···O6iii | 0.82 | 1.70 | 2.4800 (16) | 159 |
O4—H4···O7iii | 0.82 | 1.71 | 2.5283 (17) | 174 |
O7—H7A···O5iii | 0.84 (3) | 1.87 (3) | 2.7006 (18) | 166 (2) |
O7—H7B···O5iv | 0.88 (3) | 1.82 (3) | 2.6856 (19) | 169 (2) |
O7—H7B···O6v | 0.88 (3) | 2.47 (3) | 2.923 (2) | 113 (2) |
Symmetry codes: (ii) x, −y+1/2, z−1/2; (iii) −x+1, −y+1, −z+1; (iv) x, y, z+1; (v) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C5H9N2+·0.5C2O42−·C2H2O4·H2O |
Mr | 249.20 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 6.971 (3), 15.716 (7), 10.484 (4) |
β (°) | 93.736 (8) |
V (Å3) | 1146.1 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.13 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Rigaku SCXmini diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.962, 0.975 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12371, 2614, 2192 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.115, 1.08 |
No. of reflections | 2614 |
No. of parameters | 183 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.44 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···O3i | 0.86 | 2.01 | 2.855 (2) | 166.4 |
N1—H1B···O1i | 0.86 | 2.53 | 3.026 (2) | 117.7 |
N2—H2A···O7ii | 0.86 | 2.17 | 2.949 (2) | 151.2 |
N2—H2A···O3 | 0.86 | 2.47 | 3.060 (2) | 126.2 |
O1—H1A···O6ii | 0.82 | 1.70 | 2.4800 (16) | 159.4 |
O4—H4···O7ii | 0.82 | 1.71 | 2.5283 (17) | 174.4 |
O7—H7A···O5ii | 0.84 (3) | 1.87 (3) | 2.7006 (18) | 166 (2) |
O7—H7B···O5iii | 0.88 (3) | 1.82 (3) | 2.6856 (19) | 169 (2) |
O7—H7B···O6iv | 0.88 (3) | 2.47 (3) | 2.923 (2) | 113 (2) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, −y+1, −z+1; (iii) x, y, z+1; (iv) −x+2, −y+1, −z+1. |
The basic method to find potential ferroelectric phase change material is Dielectric constant measurement of compounds with temperature (Fu et al., 2009; Ye et al., 2006; Zhang et al., 2008; Zhang et al., 2010). Unfortunately, the title compound's dielectric dose not appear strange from 80 K to 298 K (m.p.219–229).
By X-ray diffraction analysis in 123 K, we can define the structure of title compound as Fig.1. Title compound, of the formula [C5H9N2] 2+ [C2O4]2-.C2H2O4.2H2O, was obtained by 2 - ethyl imidazole, oxalic acid in water in basic aqueous solution and was isolated as colourless crystals. The whole molecules are organized in a three-dimensional structure involving hydrogen bonds, both intercationic and between cations and water molecules. The O···O distances of the hydrogen bonding are observed to be in the range of 2.476 (3)–2.924 (3) Å and the N···O distances of the hydrogen bonding are in the range of 2.054 (2) - 3.059 (2) Å for table1.