Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803010961/ww6076sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536803010961/ww6076Isup2.hkl |
CCDC reference: 214859
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.005 Å
- R factor = 0.041
- wR factor = 0.134
- Data-to-parameter ratio = 9.3
checkCIF results
No syntax errors found ADDSYM reports no extra symmetry
Alert Level C:
WEIGH_01 Alert C Extra text has been found in the _refine_ls_weighting_scheme field. This should be in the _refine_ls_weighting_details field. Weighting scheme given as calc w = 1/[\s^2^(Fo^2^)+(0.0967P)^2^+0.197 Weighting scheme identified as calc PLAT_320 Alert C Check Hybridisation of C8A in Main Residue ? PLAT_320 Alert C Check Hybridisation of C8B in Main Residue ? General Notes
REFLT_03 From the CIF: _diffrn_reflns_theta_max 26.00 From the CIF: _reflns_number_total 3127 Count of symmetry unique reflns 3140 Completeness (_total/calc) 99.59% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF.
0 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
3 Alert Level C = Please check
Freshly collected soft coral sinularia sp. was cut into pieces and extracted with EtOH three times. The combined extracts were concentrated under reduced pressure and the crude extract was partitioned between H2O and EtOAc. The EtOAc-soluble portion was subjected to silica-gel column chromatography, eluting with EtOAc–hexane, and afforded the product 1(5),6(7)-diepoxy-4-guaiol according to NMR and two-dimensional NMR spectra. Crystals of (I) were obtained from hexane/EtOAc by solvent diffusion. 1H NMR (500 MHz; CDCl3): δ 1.73 (m, H2a), 2.01 (m, H2b), 1.56 (m, H3a), 1.62 (m, H3b), 3.15 (s, H6), 1.76 (m, H8a), 2.05 (m, H8b), 1.17 (m, H9a), 1.53 (m, H9b), 1.98 (m, H10), 1.07 (d, J = 7.0 Hz, H11), 1.54 (m, H12), 0.98 (d, J = 6.5 Hz, H13), 0.95 (d, J = 6.5 Hz, H14), 1.45 (s, H15).
The H atoms were positioned geometrically and were treated as riding on their parent C and O atoms, with C—H distances of 0.96 Å and O—H distances of 0.85 Å. The Friedel opposites were merged during the refinement.
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 1998); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
C15H24O3·0.5H2O | F(000) = 572 |
Mr = 261.35 | Dx = 1.155 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.3492 (13) Å | Cell parameters from 25 reflections |
b = 9.9790 (13) Å | θ = 25–31° |
c = 14.6493 (18) Å | µ = 0.08 mm−1 |
β = 96.382 (2)° | T = 293 K |
V = 1503.5 (3) Å3 | Rod, colorless |
Z = 4 | 0.50 × 0.41 × 0.35 mm |
Bruker SMART CCD diffractometer | 2858 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.013 |
Graphite monochromator | θmax = 26.0°, θmin = 2.0° |
ω scans | h = −12→12 |
8011 measured reflections | k = −12→11 |
3127 independent reflections | l = −18→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.08 | Calculated w = 1/[σ2(Fo2) + (0.0967P)2 + 0.1971P] where P = (Fo2 + 2Fc2)/3 |
3127 reflections | (Δ/σ)max = 0.001 |
335 parameters | Δρmax = 0.26 e Å−3 |
1 restraint | Δρmin = −0.23 e Å−3 |
C15H24O3·0.5H2O | V = 1503.5 (3) Å3 |
Mr = 261.35 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.3492 (13) Å | µ = 0.08 mm−1 |
b = 9.9790 (13) Å | T = 293 K |
c = 14.6493 (18) Å | 0.50 × 0.41 × 0.35 mm |
β = 96.382 (2)° |
Bruker SMART CCD diffractometer | 2858 reflections with I > 2σ(I) |
8011 measured reflections | Rint = 0.013 |
3127 independent reflections |
R[F2 > 2σ(F2)] = 0.041 | 1 restraint |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.26 e Å−3 |
3127 reflections | Δρmin = −0.23 e Å−3 |
335 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1A | 0.70920 (18) | 0.0826 (2) | 0.19439 (13) | 0.0557 (5) | |
H1A | 0.7783 | 0.0466 | 0.2201 | 0.080* | |
O2A | 0.48219 (16) | −0.0122 (2) | 0.35926 (13) | 0.0491 (4) | |
O3A | 0.38221 (16) | −0.1801 (2) | 0.20371 (13) | 0.0510 (5) | |
C1A | 0.7130 (3) | 0.0245 (4) | 0.4115 (2) | 0.0656 (9) | |
H1AA | 0.7037 | 0.0429 | 0.4748 | 0.080* | |
H1AB | 0.7986 | −0.0103 | 0.4074 | 0.080* | |
C2A | 0.6903 (3) | 0.1507 (4) | 0.3541 (2) | 0.0664 (9) | |
H2AA | 0.7716 | 0.1928 | 0.3459 | 0.080* | |
H2AB | 0.6381 | 0.2132 | 0.3838 | 0.080* | |
C3A | 0.6211 (3) | 0.1082 (3) | 0.2614 (2) | 0.0503 (6) | |
C4A | 0.5562 (2) | −0.0254 (3) | 0.28154 (17) | 0.0416 (5) | |
C5A | 0.6115 (2) | −0.0740 (3) | 0.37257 (17) | 0.0473 (6) | |
C6A | 0.6167 (3) | −0.2147 (4) | 0.40948 (19) | 0.0562 (7) | |
H6AA | 0.7040 | −0.2468 | 0.4086 | 0.080* | |
C7A | 0.5271 (3) | −0.3137 (4) | 0.3563 (3) | 0.0660 (9) | |
H7AA | 0.4399 | −0.2799 | 0.3533 | 0.080* | |
H7AB | 0.5298 | −0.3964 | 0.3899 | 0.080* | |
C8A | 0.5579 (3) | −0.3431 (3) | 0.2587 (2) | 0.0623 (8) | |
H8AA | 0.6094 | −0.4191 | 0.2452 | 0.080* | |
H8AB | 0.4806 | −0.3967 | 0.2487 | 0.080* | |
C9A | 0.5015 (2) | −0.2475 (3) | 0.1838 (2) | 0.0484 (6) | |
C10A | 0.4992 (2) | −0.1029 (3) | 0.19948 (18) | 0.0442 (5) | |
H10A | 0.4977 | −0.0526 | 0.1435 | 0.080* | |
C11A | 0.5257 (3) | 0.2133 (4) | 0.2200 (3) | 0.0709 (10) | |
H11A | 0.5717 | 0.2942 | 0.2090 | 0.080* | |
H11B | 0.4824 | 0.1805 | 0.1630 | 0.080* | |
H11C | 0.4625 | 0.2314 | 0.2617 | 0.080* | |
C12A | 0.5886 (4) | −0.2103 (6) | 0.5107 (3) | 0.0930 (14) | |
H12A | 0.6462 | −0.1472 | 0.5436 | 0.080* | |
H12B | 0.5002 | −0.1829 | 0.5136 | 0.080* | |
H12C | 0.6019 | −0.2975 | 0.5378 | 0.080* | |
C13A | 0.5004 (3) | −0.2928 (4) | 0.0849 (2) | 0.0616 (8) | |
H13A | 0.4615 | −0.2215 | 0.0474 | 0.080* | |
C14A | 0.6379 (4) | −0.3082 (7) | 0.0607 (3) | 0.1008 (17) | |
H14A | 0.6354 | −0.3369 | −0.0021 | 0.080* | |
H14B | 0.6823 | −0.2238 | 0.0683 | 0.080* | |
H14C | 0.6832 | −0.3738 | 0.1002 | 0.080* | |
C15A | 0.4162 (4) | −0.4159 (5) | 0.0621 (3) | 0.0881 (12) | |
H15A | 0.4189 | −0.4404 | −0.0011 | 0.080* | |
H15B | 0.4483 | −0.4888 | 0.1010 | 0.080* | |
H15C | 0.3282 | −0.3963 | 0.0724 | 0.080* | |
O1B | 1.15198 (18) | −0.1477 (3) | 0.08521 (13) | 0.0591 (6) | |
O2B | 0.95868 (17) | −0.0122 (2) | 0.25933 (13) | 0.0513 (5) | |
H1B | 1.2215 | −0.1428 | 0.1216 | 0.080* | |
O3B | 0.89470 (19) | −0.2958 (3) | 0.27388 (16) | 0.0626 (6) | |
C1B | 1.1761 (3) | 0.0758 (3) | 0.2399 (2) | 0.0550 (7) | |
H1BA | 1.1690 | 0.1608 | 0.2696 | 0.080* | |
H1BB | 1.2662 | 0.0513 | 0.2435 | 0.080* | |
C2B | 1.1160 (3) | 0.0812 (4) | 0.1387 (2) | 0.0645 (8) | |
H2BA | 1.1808 | 0.1031 | 0.0990 | 0.080* | |
H2BB | 1.0488 | 0.1478 | 0.1313 | 0.080* | |
C3B | 1.0592 (3) | −0.0579 (3) | 0.11682 (18) | 0.0514 (7) | |
C4B | 1.0271 (2) | −0.1108 (3) | 0.21055 (16) | 0.0408 (5) | |
C5B | 1.0991 (2) | −0.0305 (3) | 0.28343 (17) | 0.0417 (5) | |
C6B | 1.1434 (3) | −0.0689 (3) | 0.38171 (18) | 0.0506 (6) | |
H6BA | 1.2354 | −0.0847 | 0.3858 | 0.080* | |
C7B | 1.0820 (3) | −0.1945 (4) | 0.41605 (18) | 0.0554 (7) | |
H7BA | 0.9895 | −0.1817 | 0.4105 | 0.080* | |
H7BB | 1.1112 | −0.2052 | 0.4801 | 0.080* | |
C8B | 1.1106 (3) | −0.3220 (3) | 0.3663 (2) | 0.0590 (7) | |
H8BA | 1.1811 | −0.3796 | 0.3891 | 0.080* | |
H8BB | 1.0534 | −0.3702 | 0.4018 | 0.080* | |
C9B | 1.0226 (3) | −0.3559 (3) | 0.27959 (19) | 0.0499 (6) | |
C10B | 0.9826 (2) | −0.2537 (3) | 0.21096 (19) | 0.0483 (6) | |
H10B | 0.9616 | −0.2898 | 0.1504 | 0.080* | |
C11B | 0.9447 (3) | −0.0539 (4) | 0.0422 (2) | 0.0696 (10) | |
H11D | 0.9730 | −0.0197 | −0.0135 | 0.080* | |
H11E | 0.9105 | −0.1426 | 0.0317 | 0.080* | |
H11F | 0.8783 | 0.0035 | 0.0614 | 0.080* | |
C12B | 1.1224 (4) | 0.0499 (4) | 0.4450 (3) | 0.0790 (11) | |
H12D | 1.1619 | 0.1287 | 0.4228 | 0.080* | |
H12E | 1.0308 | 0.0648 | 0.4456 | 0.080* | |
H12F | 1.1611 | 0.0304 | 0.5062 | 0.080* | |
C13B | 1.0234 (4) | −0.4995 (3) | 0.2462 (2) | 0.0664 (8) | |
H13B | 0.9660 | −0.5034 | 0.1901 | 0.080* | |
C14B | 1.1578 (4) | −0.5380 (4) | 0.2229 (3) | 0.0838 (12) | |
H14D | 1.1569 | −0.6291 | 0.2017 | 0.080* | |
H14E | 1.1818 | −0.4798 | 0.1754 | 0.080* | |
H14F | 1.2195 | −0.5290 | 0.2765 | 0.080* | |
C15B | 0.9711 (5) | −0.5981 (5) | 0.3111 (3) | 0.0942 (14) | |
H15D | 0.9739 | −0.6872 | 0.2866 | 0.080* | |
H15E | 1.0236 | −0.5940 | 0.3693 | 0.080* | |
H15F | 0.8829 | −0.5754 | 0.3191 | 0.080* | |
O1W | 1.2145 (5) | −0.1662 (5) | −0.1012 (3) | 0.160 (2) | |
H1WA | 1.1963 | −0.1621 | −0.0454 | 0.150* | |
H1WB | 1.2364 | −0.2389 | −0.1271 | 0.150* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0437 (9) | 0.0702 (13) | 0.0550 (10) | 0.0048 (9) | 0.0140 (8) | 0.0112 (10) |
O2A | 0.0383 (9) | 0.0605 (11) | 0.0501 (10) | 0.0000 (8) | 0.0115 (7) | −0.0045 (9) |
O3A | 0.0337 (8) | 0.0604 (11) | 0.0579 (10) | 0.0013 (8) | 0.0004 (7) | −0.0085 (9) |
C1A | 0.0515 (16) | 0.093 (3) | 0.0517 (16) | −0.0161 (16) | 0.0049 (12) | −0.0124 (16) |
C2A | 0.0583 (17) | 0.070 (2) | 0.073 (2) | −0.0209 (16) | 0.0199 (15) | −0.0186 (18) |
C3A | 0.0420 (13) | 0.0496 (15) | 0.0612 (16) | −0.0007 (11) | 0.0140 (11) | −0.0005 (13) |
C4A | 0.0332 (11) | 0.0480 (14) | 0.0444 (12) | 0.0025 (11) | 0.0072 (9) | 0.0008 (11) |
C5A | 0.0353 (11) | 0.0663 (17) | 0.0408 (12) | −0.0012 (12) | 0.0070 (9) | −0.0006 (12) |
C6A | 0.0468 (14) | 0.073 (2) | 0.0490 (15) | 0.0065 (13) | 0.0066 (11) | 0.0159 (14) |
C7A | 0.0531 (16) | 0.065 (2) | 0.079 (2) | −0.0044 (15) | 0.0046 (14) | 0.0285 (17) |
C8A | 0.0612 (18) | 0.0455 (15) | 0.078 (2) | 0.0058 (14) | −0.0026 (15) | −0.0025 (15) |
C9A | 0.0338 (11) | 0.0524 (15) | 0.0586 (16) | 0.0005 (11) | 0.0026 (11) | −0.0063 (13) |
C10A | 0.0385 (12) | 0.0499 (14) | 0.0437 (12) | 0.0029 (11) | 0.0033 (9) | 0.0035 (11) |
C11A | 0.0545 (17) | 0.0518 (18) | 0.109 (3) | 0.0077 (14) | 0.0217 (18) | 0.0119 (18) |
C12A | 0.105 (3) | 0.120 (4) | 0.0568 (19) | 0.004 (3) | 0.0212 (19) | 0.028 (2) |
C13A | 0.0489 (15) | 0.072 (2) | 0.0635 (17) | −0.0039 (14) | 0.0070 (13) | −0.0188 (15) |
C14A | 0.061 (2) | 0.154 (5) | 0.090 (3) | −0.005 (3) | 0.0208 (19) | −0.039 (3) |
C15A | 0.098 (3) | 0.089 (3) | 0.078 (2) | −0.022 (2) | 0.011 (2) | −0.031 (2) |
O1B | 0.0438 (10) | 0.0900 (17) | 0.0441 (9) | 0.0126 (10) | 0.0070 (8) | −0.0081 (10) |
O2B | 0.0364 (9) | 0.0658 (12) | 0.0524 (10) | 0.0129 (9) | 0.0076 (7) | −0.0024 (9) |
O3B | 0.0392 (9) | 0.0775 (14) | 0.0719 (13) | −0.0096 (10) | 0.0095 (9) | 0.0069 (11) |
C1B | 0.0545 (15) | 0.0459 (15) | 0.0658 (17) | −0.0024 (13) | 0.0127 (13) | 0.0017 (13) |
C2B | 0.0695 (19) | 0.0629 (19) | 0.0629 (18) | 0.0045 (16) | 0.0146 (15) | 0.0203 (16) |
C3B | 0.0464 (13) | 0.0659 (17) | 0.0425 (13) | 0.0117 (13) | 0.0079 (10) | 0.0075 (12) |
C4B | 0.0325 (10) | 0.0499 (13) | 0.0401 (12) | 0.0075 (10) | 0.0044 (9) | 0.0018 (11) |
C5B | 0.0339 (11) | 0.0461 (14) | 0.0456 (12) | 0.0047 (10) | 0.0069 (9) | −0.0011 (11) |
C6B | 0.0426 (13) | 0.0656 (18) | 0.0425 (13) | −0.0053 (12) | −0.0007 (10) | −0.0041 (12) |
C7B | 0.0602 (16) | 0.0686 (19) | 0.0367 (12) | −0.0045 (14) | 0.0014 (11) | 0.0020 (12) |
C8B | 0.0580 (16) | 0.0597 (18) | 0.0564 (16) | 0.0034 (14) | −0.0059 (13) | 0.0096 (14) |
C9B | 0.0467 (13) | 0.0543 (15) | 0.0497 (14) | −0.0084 (12) | 0.0101 (11) | 0.0017 (12) |
C10B | 0.0405 (12) | 0.0605 (16) | 0.0427 (13) | −0.0075 (12) | −0.0006 (10) | −0.0019 (12) |
C11B | 0.0580 (17) | 0.102 (3) | 0.0470 (15) | 0.0172 (18) | 0.0000 (12) | 0.0169 (17) |
C12B | 0.099 (3) | 0.079 (2) | 0.0585 (19) | −0.023 (2) | 0.0093 (18) | −0.0213 (18) |
C13B | 0.083 (2) | 0.0536 (17) | 0.0640 (18) | −0.0177 (16) | 0.0155 (16) | −0.0003 (15) |
C14B | 0.106 (3) | 0.054 (2) | 0.097 (3) | −0.0022 (19) | 0.039 (2) | −0.0026 (19) |
C15B | 0.120 (4) | 0.066 (2) | 0.103 (3) | −0.031 (2) | 0.045 (3) | 0.000 (2) |
O1W | 0.268 (6) | 0.134 (4) | 0.085 (2) | 0.082 (4) | 0.052 (3) | 0.008 (2) |
O1A—C3A | 1.435 (3) | O1B—H1B | 0.8481 |
O1A—H1A | 0.8500 | O2B—C4B | 1.447 (3) |
O2A—C4A | 1.447 (3) | O2B—C5B | 1.468 (3) |
O2A—C5A | 1.467 (3) | O3B—C10B | 1.429 (3) |
O3A—C10A | 1.442 (3) | O3B—C9B | 1.448 (4) |
O3A—C9A | 1.463 (3) | C1B—C5B | 1.510 (4) |
C1A—C5A | 1.503 (4) | C1B—C2B | 1.543 (5) |
C1A—C2A | 1.518 (6) | C1B—H1BA | 0.9600 |
C1A—H1AA | 0.9601 | C1B—H1BB | 0.9597 |
C1A—H1AB | 0.9600 | C2B—C3B | 1.528 (5) |
C2A—C3A | 1.524 (5) | C2B—H2BA | 0.9601 |
C2A—H2AA | 0.9598 | C2B—H2BB | 0.9601 |
C2A—H2AB | 0.9601 | C3B—C11B | 1.520 (4) |
C3A—C11A | 1.520 (4) | C3B—C4B | 1.541 (4) |
C3A—C4A | 1.536 (4) | C4B—C5B | 1.469 (4) |
C4A—C5A | 1.473 (4) | C4B—C10B | 1.499 (4) |
C4A—C10A | 1.495 (4) | C5B—C6B | 1.511 (4) |
C5A—C6A | 1.504 (5) | C6B—C7B | 1.516 (4) |
C6A—C7A | 1.511 (5) | C6B—C12B | 1.536 (5) |
C6A—C12A | 1.543 (4) | C6B—H6BA | 0.9600 |
C6A—H6AA | 0.9600 | C7B—C8B | 1.512 (5) |
C7A—C8A | 1.527 (5) | C7B—H7BA | 0.9600 |
C7A—H7AA | 0.9600 | C7B—H7BB | 0.9599 |
C7A—H7AB | 0.9600 | C8B—C9B | 1.516 (4) |
C8A—C9A | 1.520 (4) | C8B—H8BA | 0.9600 |
C8A—H8AA | 0.9600 | C8B—H8BB | 0.9600 |
C8A—H8AB | 0.9599 | C9B—C10B | 1.460 (4) |
C9A—C10A | 1.462 (4) | C9B—C13B | 1.514 (5) |
C9A—C13A | 1.517 (4) | C10B—H10B | 0.9600 |
C10A—H10A | 0.9600 | C11B—H11D | 0.9601 |
C11A—H11A | 0.9601 | C11B—H11E | 0.9600 |
C11A—H11B | 0.9603 | C11B—H11F | 0.9600 |
C11A—H11C | 0.9597 | C12B—H12D | 0.9600 |
C12A—H12A | 0.9600 | C12B—H12E | 0.9602 |
C12A—H12B | 0.9600 | C12B—H12F | 0.9600 |
C12A—H12C | 0.9600 | C13B—C15B | 1.510 (5) |
C13A—C14A | 1.513 (5) | C13B—C14B | 1.518 (5) |
C13A—C15A | 1.522 (5) | C13B—H13B | 0.9599 |
C13A—H13A | 0.9600 | C14B—H14D | 0.9600 |
C14A—H14A | 0.9601 | C14B—H14E | 0.9601 |
C14A—H14B | 0.9600 | C14B—H14F | 0.9601 |
C14A—H14C | 0.9600 | C15B—H15D | 0.9601 |
C15A—H15A | 0.9601 | C15B—H15E | 0.9599 |
C15A—H15B | 0.9601 | C15B—H15F | 0.9600 |
C15A—H15C | 0.9600 | O1W—H1WA | 0.8600 |
O1B—C3B | 1.428 (3) | O1W—H1WB | 0.8606 |
C3A—O1A—H1A | 109.9 | C4B—O2B—C5B | 60.55 (15) |
C4A—O2A—C5A | 60.74 (15) | C10B—O3B—C9B | 61.00 (17) |
C10A—O3A—C9A | 60.42 (17) | C5B—C1B—C2B | 104.8 (2) |
C5A—C1A—C2A | 105.9 (2) | C5B—C1B—H1BA | 111.0 |
C5A—C1A—H1AA | 110.6 | C2B—C1B—H1BA | 111.2 |
C2A—C1A—H1AA | 110.5 | C5B—C1B—H1BB | 110.7 |
C5A—C1A—H1AB | 110.5 | C2B—C1B—H1BB | 110.3 |
C2A—C1A—H1AB | 110.6 | H1BA—C1B—H1BB | 108.9 |
H1AA—C1A—H1AB | 108.8 | C3B—C2B—C1B | 105.9 (2) |
C1A—C2A—C3A | 106.9 (3) | C3B—C2B—H2BA | 111.0 |
C1A—C2A—H2AA | 110.4 | C1B—C2B—H2BA | 110.9 |
C3A—C2A—H2AA | 110.0 | C3B—C2B—H2BB | 110.4 |
C1A—C2A—H2AB | 110.4 | C1B—C2B—H2BB | 110.0 |
C3A—C2A—H2AB | 110.6 | H2BA—C2B—H2BB | 108.7 |
H2AA—C2A—H2AB | 108.6 | O1B—C3B—C11B | 106.4 (2) |
O1A—C3A—C11A | 106.5 (3) | O1B—C3B—C2B | 112.4 (2) |
O1A—C3A—C2A | 112.8 (2) | C11B—C3B—C2B | 112.2 (3) |
C11A—C3A—C2A | 112.5 (3) | O1B—C3B—C4B | 107.1 (2) |
O1A—C3A—C4A | 107.6 (2) | C11B—C3B—C4B | 114.9 (2) |
C11A—C3A—C4A | 113.4 (2) | C2B—C3B—C4B | 103.9 (2) |
C2A—C3A—C4A | 104.0 (2) | O2B—C4B—C5B | 60.45 (16) |
O2A—C4A—C5A | 60.28 (16) | O2B—C4B—C10B | 118.5 (2) |
O2A—C4A—C10A | 118.9 (2) | C5B—C4B—C10B | 130.3 (2) |
C5A—C4A—C10A | 129.6 (3) | O2B—C4B—C3B | 111.9 (2) |
O2A—C4A—C3A | 110.7 (2) | C5B—C4B—C3B | 108.6 (2) |
C5A—C4A—C3A | 109.0 (2) | C10B—C4B—C3B | 115.2 (2) |
C10A—C4A—C3A | 115.9 (2) | O2B—C5B—C4B | 59.00 (15) |
O2A—C5A—C4A | 58.98 (15) | O2B—C5B—C1B | 111.5 (2) |
O2A—C5A—C1A | 111.4 (3) | C4B—C5B—C1B | 109.0 (2) |
C4A—C5A—C1A | 108.3 (3) | O2B—C5B—C6B | 116.6 (2) |
O2A—C5A—C6A | 115.8 (2) | C4B—C5B—C6B | 129.0 (2) |
C4A—C5A—C6A | 128.8 (3) | C1B—C5B—C6B | 117.5 (2) |
C1A—C5A—C6A | 118.6 (3) | C5B—C6B—C7B | 115.6 (2) |
C5A—C6A—C7A | 115.5 (2) | C5B—C6B—C12B | 109.3 (3) |
C5A—C6A—C12A | 108.4 (3) | C7B—C6B—C12B | 110.2 (2) |
C7A—C6A—C12A | 110.1 (3) | C5B—C6B—H6BA | 107.1 |
C5A—C6A—H6AA | 107.6 | C7B—C6B—H6BA | 107.1 |
C7A—C6A—H6AA | 107.4 | C12B—C6B—H6BA | 107.2 |
C12A—C6A—H6AA | 107.5 | C8B—C7B—C6B | 115.1 (2) |
C6A—C7A—C8A | 115.4 (3) | C8B—C7B—H7BA | 108.5 |
C6A—C7A—H7AA | 108.2 | C6B—C7B—H7BA | 108.3 |
C8A—C7A—H7AA | 108.5 | C8B—C7B—H7BB | 108.7 |
C6A—C7A—H7AB | 108.4 | C6B—C7B—H7BB | 108.6 |
C8A—C7A—H7AB | 108.6 | H7BA—C7B—H7BB | 107.5 |
H7AA—C7A—H7AB | 107.4 | C7B—C8B—C9B | 117.4 (3) |
C9A—C8A—C7A | 116.8 (3) | C7B—C8B—H8BA | 121.2 |
C9A—C8A—H8AA | 121.6 | C9B—C8B—H8BA | 121.3 |
C7A—C8A—H8AA | 121.5 | C7B—C8B—H8BB | 89.7 |
C9A—C8A—H8AB | 89.5 | C9B—C8B—H8BB | 89.6 |
C7A—C8A—H8AB | 89.6 | H8BA—C8B—H8BB | 90.1 |
H8AA—C8A—H8AB | 90.0 | O3B—C9B—C10B | 58.87 (18) |
C10A—C9A—O3A | 59.06 (17) | O3B—C9B—C13B | 114.3 (3) |
C10A—C9A—C13A | 116.4 (3) | C10B—C9B—C13B | 116.8 (3) |
O3A—C9A—C13A | 114.2 (2) | O3B—C9B—C8B | 114.6 (2) |
C10A—C9A—C8A | 121.2 (3) | C10B—C9B—C8B | 121.2 (3) |
O3A—C9A—C8A | 114.2 (2) | C13B—C9B—C8B | 117.2 (3) |
C13A—C9A—C8A | 117.6 (3) | O3B—C10B—C9B | 60.13 (18) |
O3A—C10A—C9A | 60.52 (17) | O3B—C10B—C4B | 120.0 (2) |
O3A—C10A—C4A | 120.0 (2) | C9B—C10B—C4B | 127.2 (2) |
C9A—C10A—C4A | 128.7 (2) | O3B—C10B—H10B | 113.0 |
O3A—C10A—H10A | 112.5 | C9B—C10B—H10B | 113.0 |
C9A—C10A—H10A | 112.4 | C4B—C10B—H10B | 113.1 |
C4A—C10A—H10A | 112.6 | C3B—C11B—H11D | 109.5 |
C3A—C11A—H11A | 109.6 | C3B—C11B—H11E | 109.6 |
C3A—C11A—H11B | 109.3 | H11D—C11B—H11E | 109.5 |
H11A—C11A—H11B | 109.4 | C3B—C11B—H11F | 109.3 |
C3A—C11A—H11C | 109.5 | H11D—C11B—H11F | 109.5 |
H11A—C11A—H11C | 109.5 | H11E—C11B—H11F | 109.5 |
H11B—C11A—H11C | 109.5 | C6B—C12B—H12D | 109.5 |
C6A—C12A—H12A | 109.2 | C6B—C12B—H12E | 109.4 |
C6A—C12A—H12B | 109.5 | H12D—C12B—H12E | 109.5 |
H12A—C12A—H12B | 109.5 | C6B—C12B—H12F | 109.5 |
C6A—C12A—H12C | 109.8 | H12D—C12B—H12F | 109.5 |
H12A—C12A—H12C | 109.5 | H12E—C12B—H12F | 109.5 |
H12B—C12A—H12C | 109.5 | C15B—C13B—C9B | 113.5 (3) |
C14A—C13A—C9A | 110.3 (3) | C15B—C13B—C14B | 112.3 (4) |
C14A—C13A—C15A | 113.4 (4) | C9B—C13B—C14B | 110.5 (3) |
C9A—C13A—C15A | 113.2 (3) | C15B—C13B—H13B | 106.3 |
C14A—C13A—H13A | 106.7 | C9B—C13B—H13B | 106.9 |
C9A—C13A—H13A | 106.5 | C14B—C13B—H13B | 107.0 |
C15A—C13A—H13A | 106.2 | C13B—C14B—H14D | 109.7 |
C13A—C14A—H14A | 109.2 | C13B—C14B—H14E | 109.1 |
C13A—C14A—H14B | 109.5 | H14D—C14B—H14E | 109.5 |
H14A—C14A—H14B | 109.5 | C13B—C14B—H14F | 109.6 |
C13A—C14A—H14C | 109.7 | H14D—C14B—H14F | 109.5 |
H14A—C14A—H14C | 109.5 | H14E—C14B—H14F | 109.5 |
H14B—C14A—H14C | 109.5 | C13B—C15B—H15D | 109.9 |
C13A—C15A—H15A | 109.9 | C13B—C15B—H15E | 108.9 |
C13A—C15A—H15B | 109.2 | H15D—C15B—H15E | 109.5 |
H15A—C15A—H15B | 109.5 | C13B—C15B—H15F | 109.6 |
C13A—C15A—H15C | 109.3 | H15D—C15B—H15F | 109.5 |
H15A—C15A—H15C | 109.5 | H15E—C15B—H15F | 109.5 |
H15B—C15A—H15C | 109.5 | H1WA—O1W—H1WB | 123.7 |
C3B—O1B—H1B | 108.3 | ||
C5A—C1A—C2A—C3A | −24.2 (3) | C5B—C1B—C2B—C3B | −27.0 (3) |
C1A—C2A—C3A—O1A | −93.1 (3) | C1B—C2B—C3B—O1B | −88.1 (3) |
C1A—C2A—C3A—C11A | 146.3 (3) | C1B—C2B—C3B—C11B | 152.0 (3) |
C1A—C2A—C3A—C4A | 23.1 (3) | C1B—C2B—C3B—C4B | 27.3 (3) |
C5A—O2A—C4A—C10A | 121.5 (3) | C5B—O2B—C4B—C10B | 122.6 (3) |
C5A—O2A—C4A—C3A | −100.7 (2) | C5B—O2B—C4B—C3B | −99.6 (2) |
O1A—C3A—C4A—O2A | 170.6 (2) | O1B—C3B—C4B—O2B | 166.2 (2) |
C11A—C3A—C4A—O2A | −71.9 (3) | C11B—C3B—C4B—O2B | −75.9 (3) |
C2A—C3A—C4A—O2A | 50.7 (3) | C2B—C3B—C4B—O2B | 47.1 (3) |
O1A—C3A—C4A—C5A | 106.1 (2) | O1B—C3B—C4B—C5B | 101.4 (3) |
C11A—C3A—C4A—C5A | −136.4 (3) | C11B—C3B—C4B—C5B | −140.7 (3) |
C2A—C3A—C4A—C5A | −13.8 (3) | C2B—C3B—C4B—C5B | −17.7 (3) |
O1A—C3A—C4A—C10A | −50.2 (3) | O1B—C3B—C4B—C10B | −54.4 (3) |
C11A—C3A—C4A—C10A | 67.3 (3) | C11B—C3B—C4B—C10B | 63.4 (3) |
C2A—C3A—C4A—C10A | −170.1 (2) | C2B—C3B—C4B—C10B | −173.6 (2) |
C4A—O2A—C5A—C1A | 99.1 (3) | C4B—O2B—C5B—C1B | 99.8 (2) |
C4A—O2A—C5A—C6A | −121.5 (3) | C4B—O2B—C5B—C6B | −121.3 (3) |
C10A—C4A—C5A—O2A | −104.5 (3) | C10B—C4B—C5B—O2B | −103.8 (3) |
C3A—C4A—C5A—O2A | 103.5 (2) | C3B—C4B—C5B—O2B | 105.2 (2) |
O2A—C4A—C5A—C1A | −104.4 (3) | O2B—C4B—C5B—C1B | −104.2 (2) |
C10A—C4A—C5A—C1A | 151.1 (3) | C10B—C4B—C5B—C1B | 152.0 (3) |
C3A—C4A—C5A—C1A | −0.9 (3) | C3B—C4B—C5B—C1B | 1.0 (3) |
O2A—C4A—C5A—C6A | 99.7 (3) | O2B—C4B—C5B—C6B | 100.8 (3) |
C10A—C4A—C5A—C6A | −4.8 (4) | C10B—C4B—C5B—C6B | −3.1 (4) |
C3A—C4A—C5A—C6A | −156.8 (2) | C3B—C4B—C5B—C6B | −154.1 (2) |
C2A—C1A—C5A—O2A | −47.6 (3) | C2B—C1B—C5B—O2B | −47.2 (3) |
C2A—C1A—C5A—C4A | 15.4 (3) | C2B—C1B—C5B—C4B | 16.0 (3) |
C2A—C1A—C5A—C6A | 174.2 (2) | C2B—C1B—C5B—C6B | 174.3 (2) |
O2A—C5A—C6A—C7A | 53.8 (3) | O2B—C5B—C6B—C7B | 55.9 (3) |
C4A—C5A—C6A—C7A | −16.0 (4) | C4B—C5B—C6B—C7B | −14.5 (4) |
C1A—C5A—C6A—C7A | −169.7 (3) | C1B—C5B—C6B—C7B | −167.7 (2) |
O2A—C5A—C6A—C12A | −70.2 (3) | O2B—C5B—C6B—C12B | −69.0 (3) |
C4A—C5A—C6A—C12A | −140.0 (3) | C4B—C5B—C6B—C12B | −139.4 (3) |
C1A—C5A—C6A—C12A | 66.2 (3) | C1B—C5B—C6B—C12B | 67.3 (3) |
C5A—C6A—C7A—C8A | 65.5 (4) | C5B—C6B—C7B—C8B | 62.8 (3) |
C12A—C6A—C7A—C8A | −171.4 (3) | C12B—C6B—C7B—C8B | −172.7 (3) |
C6A—C7A—C8A—C9A | −85.2 (4) | C6B—C7B—C8B—C9B | −86.2 (3) |
C10A—O3A—C9A—C13A | −107.4 (3) | C10B—O3B—C9B—C13B | −107.7 (3) |
C10A—O3A—C9A—C8A | 113.1 (3) | C10B—O3B—C9B—C8B | 112.9 (3) |
C7A—C8A—C9A—C10A | 40.7 (4) | C7B—C8B—C9B—O3B | −23.7 (4) |
C7A—C8A—C9A—O3A | −26.5 (4) | C7B—C8B—C9B—C10B | 43.5 (4) |
C7A—C8A—C9A—C13A | −164.5 (3) | C7B—C8B—C9B—C13B | −161.8 (3) |
C9A—O3A—C10A—C4A | −120.2 (3) | C9B—O3B—C10B—C4B | −118.2 (3) |
C13A—C9A—C10A—O3A | 103.6 (2) | C13B—C9B—C10B—O3B | 103.5 (3) |
C8A—C9A—C10A—O3A | −101.3 (3) | C8B—C9B—C10B—O3B | −101.6 (3) |
O3A—C9A—C10A—C4A | 106.5 (3) | O3B—C9B—C10B—C4B | 106.8 (3) |
C13A—C9A—C10A—C4A | −149.9 (2) | C13B—C9B—C10B—C4B | −149.7 (3) |
C8A—C9A—C10A—C4A | 5.2 (4) | C8B—C9B—C10B—C4B | 5.2 (4) |
O2A—C4A—C10A—O3A | −9.6 (4) | O2B—C4B—C10B—O3B | −13.5 (3) |
C5A—C4A—C10A—O3A | 64.3 (3) | C5B—C4B—C10B—O3B | 60.6 (4) |
C3A—C4A—C10A—O3A | −145.3 (2) | C3B—C4B—C10B—O3B | −150.0 (2) |
O2A—C4A—C10A—C9A | −84.2 (3) | O2B—C4B—C10B—C9B | −87.0 (3) |
C5A—C4A—C10A—C9A | −10.3 (4) | C5B—C4B—C10B—C9B | −13.0 (4) |
C3A—C4A—C10A—C9A | 140.1 (3) | C3B—C4B—C10B—C9B | 136.5 (3) |
C10A—C9A—C13A—C14A | 91.0 (4) | O3B—C9B—C13B—C15B | −72.8 (4) |
O3A—C9A—C13A—C14A | 157.1 (4) | C10B—C9B—C13B—C15B | −138.7 (3) |
C8A—C9A—C13A—C14A | −64.9 (5) | C8B—C9B—C13B—C15B | 65.4 (4) |
C10A—C9A—C13A—C15A | −140.7 (3) | O3B—C9B—C13B—C14B | 160.1 (3) |
O3A—C9A—C13A—C15A | −74.7 (4) | C10B—C9B—C13B—C14B | 94.2 (4) |
C8A—C9A—C13A—C15A | 63.3 (4) | C8B—C9B—C13B—C14B | −61.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1A···O2B | 0.85 | 1.98 | 2.814 (3) | 167 |
O1B—H1B···O3Ai | 0.85 | 1.98 | 2.806 (3) | 166 |
O1W—H1WA···O1B | 0.86 | 2.02 | 2.882 (4) | 179 |
O1W—H1WB···O1Aii | 0.86 | 2.14 | 3.002 (5) | 179 |
Symmetry codes: (i) x+1, y, z; (ii) −x+2, y−1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C15H24O3·0.5H2O |
Mr | 261.35 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 10.3492 (13), 9.9790 (13), 14.6493 (18) |
β (°) | 96.382 (2) |
V (Å3) | 1503.5 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.50 × 0.41 × 0.35 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8011, 3127, 2858 |
Rint | 0.013 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.134, 1.08 |
No. of reflections | 3127 |
No. of parameters | 335 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.23 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SAINT, SHELXTL (Bruker, 1998), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1A···O2B | 0.85 | 1.98 | 2.814 (3) | 166.8 |
O1B—H1B···O3Ai | 0.85 | 1.98 | 2.806 (3) | 165.9 |
O1W—H1WA···O1B | 0.86 | 2.02 | 2.882 (4) | 178.5 |
O1W—H1WB···O1Aii | 0.86 | 2.14 | 3.002 (5) | 178.7 |
Symmetry codes: (i) x+1, y, z; (ii) −x+2, y−1/2, −z. |
1(5),6(7)-diepoxy-4-guaiol, also known as as singuaiol, was isolated from the soft coral sinularia sp., collected from Sanya bay, Hainan Province, China. In this sesquiterpenoid, besides the ordinary epoxy group between atoms C6 and C7, there is a rare epoxy group between atoms C1 and C5. It is a new guaiane sesquiterpenoid. Its structure was elucidated on the basis of spectroscopic analysis (Rao et al.2000). We undertook an X-ray study of 1(5),6(7)-diepoxy-4-guaiol to confirm the relative stereochemistry and present here the structure of its hemihydrate, (I).
The X-ray study of (I) confirms the previously proposed structure based on spectroscopic data. The asymmetric unit of (I) consists of two independent molecules, A and B (Fig. 1), linked by hydrogen bonds O1A—H1A···O2B and O1B—H1B···O3A (Table 1). Its crystal structure shows that the two epoxy rings are approximately equilateral triangles. The C—O and C—C bond lengths are in the range 1.447 (3)–1.476 Å, and the angles are in the range 58.95 (15)–60.85 (15)°. [There is no bond length 1.476 and no angles as given, please check]
In the solid-state structure, O1A—H1A···O2B and O1B—H1B···O3A hydrogen bonds link the two independent molecules into an infinite chain along the a axis. These chains are further interlinked by the water molecules through O1W—H1WA···O1B and O1W—H1WB···O1A hydrogen bonds into supramolecular arrays (Fig. 2).