issue contents
May 2004 issue
research papers
Existing methods for the optimal superimposition of two protein molecules are based on the precondition that the centroids of the vector sets of their atomic coordinates are coincident. This is obviously not strict in the mathematical sense. The theorem presented in this paper is a strict solution for this problem in the mathematical sense.
Two databases of multipoles describing the electron density of the polypeptide main chain are compared.
The first observation of X-ray multiple-wave interaction in an incommensurate charge-density-wave (CDW) modulated structure at low temperatures is reported for an example of a quasi-two-dimensional material, NbSe2-2H.
It is established that the set of global maximizers of a commonly used correlation coefficient are also global minimizers of a least-squares function.
Twin laws by (reticular) pseudo-merohedry are investigated for which the obliquity δ vanishes for an appropriate value of the axial ratio c/a. For arbitrary values of c/a, it is shown that δ is related to the deformation parameter ∊ introduced by Bonnet & Durand [Philos. Mag. (1975>), 32, 997–1006]. Furthermore, tanδ is a product of two factors: one describes the dependency on the lattice parameters, the other the effect of the lattice misorientation.
The joint probability distribution method has been applied to locate heavy atoms in the isomorphous replacement method.
Three types of sphere packing with remarkable properties are described. They show that from the crystallographic point of view in exceptional cases the usual definition of sphere-packing types based on graph-theoretical criteria may be not sufficient.
Minimal sphere-packing densities and sample coordinates are presented for all 199 types of homogeneous sphere packings with cubic symmetry.
The moments of the probability distribution of n-dimensional anisotropic thermal ellipsoids are provided as functions of dimension n. For specific dimensions n = 2 and n = 3, new formulas are presented for the semi-axis lengths and rotation angles of the thermal ellipsoids.
Cellular automata are used to model the topology of structures consisting of frameworks based upon fundamental building blocks.
The mathematical relationships among rotations producing coincident site lattices are developed in terms of intuitively understandable algebraic and topological models. Examples demonstrate applications in grain-boundary engineering and in the statistical descriptions of grain-boundary networks.
short communications
The theorem that a fullerene Cn with any even n ≥ 70 and no adjacent pentagons exists is proved.
The symmetrical case of multiple diffraction, where a triplet of the diffraction vectors forms an isosceles triangle, is considered. A simple trigonometric form is obtained for the polarization factor by treating separately the variables for spectral-dependent and spectral-independent contributions.