organic compounds
1-(2,6-Dichlorobenzoyl)-3-(3,5-dichlorophenyl)thiourea
aDepartment of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan, and bInstitut für Anorganische Chemie, J. W. Goethe-Universität Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/Main, Germany
*Correspondence e-mail: aminbadshah@yahoo.com
The 14H8Cl4N2OS, is composed of discrete molecules with bond lengths and angles quite typical for thiourea compounds of this class. The plane containing the central SONNCC atom set subtends a dihedral angle of 31.47 (3)° with the benzene ring. An intramolecular N—H⋯O hydrogen bond stabilizes the molecular conformation and the molecules form centrosymmetric dimers via intermolecular N—H⋯S hydrogen bonds.
of the title compound, CRelated literature
For general background, see: Upadlgaya & Srivastava (1982); Wegner et al. (1986); Krishnamurthy et al. (1999). For related structures, see: Khawar Rauf et al. (2006a, 2007). For a description of the Cambridge Structural Database, see: Allen (2002). For bond lengths and angles in N,N′-disubstituted thiourea compounds, see: Arslan et al. (2004); Khawar Rauf et al. (2006b); Yamin & Yusof, (2003).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2001); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536808042736/fl2225sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808042736/fl2225Isup2.hkl
Freshly prepared 2,6-dichlorobenzoyl isothiocyanate (2.32 g, 10 mmol) was stirred in acetone (40 ml) for 20 minutes. Neat 3,5-dichloroaniline (1.62 g, 10 mmol) was then added and the resulting mixture was stirred for 1 h. The reaction mixture was then poured into acidified (pH 4) water and stirred well. The solid product was separated and washed with deionized water and purified by recrystallization from methanol/ 1,1-dichloromethane (1:10 v/v) to give fine crystals of (I), with an overall yield of 80%.
Hydrogen atoms bonded to C were included in calculated positions and refined as riding on their parent C atom with C—H = 0.95 Å Uiso(H) = 1.2Ueq(C). The H atoms bonded to N were freely refined.
Data collection: X-AREA (Stoe & Cie, 2001); cell
X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C14H8Cl4N2OS | F(000) = 792 |
Mr = 394.08 | Dx = 1.610 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 13230 reflections |
a = 14.7737 (13) Å | θ = 3.8–27.8° |
b = 10.3744 (6) Å | µ = 0.86 mm−1 |
c = 10.6935 (11) Å | T = 173 K |
β = 97.250 (7)° | Plate, colourless |
V = 1625.9 (2) Å3 | 0.42 × 0.38 × 0.21 mm |
Z = 4 |
Stoe IPDSII two-circle diffractometer | 3724 independent reflections |
Radiation source: fine-focus sealed tube | 3306 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 27.5°, θmin = 3.7° |
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) | h = −19→19 |
Tmin = 0.715, Tmax = 0.841 | k = −13→13 |
12823 measured reflections | l = −10→13 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0525P)2 + 0.486P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
3724 reflections | Δρmax = 0.44 e Å−3 |
208 parameters | Δρmin = −0.36 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0246 (15) |
C14H8Cl4N2OS | V = 1625.9 (2) Å3 |
Mr = 394.08 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.7737 (13) Å | µ = 0.86 mm−1 |
b = 10.3744 (6) Å | T = 173 K |
c = 10.6935 (11) Å | 0.42 × 0.38 × 0.21 mm |
β = 97.250 (7)° |
Stoe IPDSII two-circle diffractometer | 3724 independent reflections |
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995) | 3306 reflections with I > 2σ(I) |
Tmin = 0.715, Tmax = 0.841 | Rint = 0.046 |
12823 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 0 restraints |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.44 e Å−3 |
3724 reflections | Δρmin = −0.36 e Å−3 |
208 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.35875 (3) | 0.16745 (4) | 0.09234 (4) | 0.02939 (13) | |
Cl2 | 0.39163 (3) | 0.58457 (4) | 0.39696 (4) | 0.02796 (12) | |
Cl3 | 0.93189 (3) | 0.14605 (4) | 0.52460 (4) | 0.03065 (13) | |
Cl4 | 0.97033 (3) | 0.59117 (4) | 0.27286 (4) | 0.02639 (12) | |
C1 | 0.46669 (10) | 0.35599 (15) | 0.26849 (14) | 0.0171 (3) | |
O1 | 0.50255 (7) | 0.29825 (13) | 0.36158 (11) | 0.0257 (3) | |
N1 | 0.51344 (8) | 0.40910 (14) | 0.17722 (13) | 0.0185 (3) | |
H1 | 0.4844 (15) | 0.443 (2) | 0.115 (2) | 0.028 (5)* | |
S1 | 0.64669 (2) | 0.48065 (5) | 0.04928 (4) | 0.02559 (13) | |
C2 | 0.60770 (10) | 0.41647 (15) | 0.17586 (15) | 0.0168 (3) | |
N2 | 0.65773 (8) | 0.36848 (14) | 0.27949 (13) | 0.0178 (3) | |
H2 | 0.6248 (15) | 0.327 (2) | 0.333 (2) | 0.033 (6)* | |
C11 | 0.36443 (10) | 0.37608 (15) | 0.24447 (14) | 0.0170 (3) | |
C12 | 0.30851 (10) | 0.29239 (16) | 0.16745 (15) | 0.0196 (3) | |
C13 | 0.21408 (11) | 0.30756 (19) | 0.14814 (18) | 0.0265 (4) | |
H13 | 0.1771 | 0.2506 | 0.0941 | 0.032* | |
C14 | 0.17491 (11) | 0.40754 (19) | 0.2093 (2) | 0.0300 (4) | |
H14 | 0.1105 | 0.4177 | 0.1978 | 0.036* | |
C15 | 0.22860 (12) | 0.49305 (18) | 0.28705 (18) | 0.0270 (4) | |
H15 | 0.2014 | 0.5610 | 0.3288 | 0.032* | |
C16 | 0.32308 (10) | 0.47701 (16) | 0.30247 (15) | 0.0195 (3) | |
C21 | 0.75373 (10) | 0.37152 (16) | 0.31296 (14) | 0.0170 (3) | |
C22 | 0.79148 (10) | 0.27196 (16) | 0.39134 (15) | 0.0196 (3) | |
H22 | 0.7539 | 0.2054 | 0.4175 | 0.024* | |
C23 | 0.88510 (10) | 0.27226 (16) | 0.43034 (15) | 0.0208 (3) | |
C24 | 0.94227 (10) | 0.36829 (17) | 0.39447 (15) | 0.0217 (3) | |
H24 | 1.0062 | 0.3666 | 0.4205 | 0.026* | |
C25 | 0.90178 (10) | 0.46720 (16) | 0.31857 (15) | 0.0189 (3) | |
C26 | 0.80870 (10) | 0.47105 (16) | 0.27637 (15) | 0.0184 (3) | |
H26 | 0.7832 | 0.5394 | 0.2242 | 0.022* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0285 (2) | 0.0291 (2) | 0.0314 (2) | −0.00172 (16) | 0.00678 (17) | −0.00990 (17) |
Cl2 | 0.0319 (2) | 0.0247 (2) | 0.0269 (2) | −0.00439 (15) | 0.00228 (17) | −0.00444 (16) |
Cl3 | 0.0275 (2) | 0.0330 (2) | 0.0291 (2) | 0.00629 (16) | −0.00562 (16) | 0.01025 (18) |
Cl4 | 0.01753 (19) | 0.0297 (2) | 0.0324 (2) | −0.00597 (14) | 0.00488 (15) | 0.00171 (16) |
C1 | 0.0145 (6) | 0.0204 (8) | 0.0165 (7) | −0.0021 (5) | 0.0017 (5) | 0.0004 (6) |
O1 | 0.0169 (5) | 0.0394 (7) | 0.0207 (6) | −0.0008 (5) | 0.0015 (4) | 0.0116 (5) |
N1 | 0.0121 (6) | 0.0269 (7) | 0.0160 (6) | 0.0004 (5) | 0.0005 (5) | 0.0066 (5) |
S1 | 0.01402 (18) | 0.0436 (3) | 0.0194 (2) | 0.00106 (16) | 0.00325 (14) | 0.01158 (17) |
C2 | 0.0135 (6) | 0.0201 (8) | 0.0168 (7) | 0.0008 (5) | 0.0018 (5) | 0.0010 (6) |
N2 | 0.0120 (6) | 0.0237 (7) | 0.0177 (6) | −0.0012 (5) | 0.0014 (5) | 0.0037 (5) |
C11 | 0.0138 (6) | 0.0216 (8) | 0.0158 (7) | −0.0009 (5) | 0.0032 (5) | 0.0048 (6) |
C12 | 0.0172 (7) | 0.0226 (8) | 0.0192 (8) | −0.0013 (6) | 0.0035 (5) | 0.0014 (6) |
C13 | 0.0169 (7) | 0.0316 (9) | 0.0298 (9) | −0.0065 (6) | −0.0021 (6) | 0.0016 (7) |
C14 | 0.0135 (7) | 0.0371 (10) | 0.0391 (10) | 0.0025 (7) | 0.0016 (7) | 0.0051 (8) |
C15 | 0.0222 (8) | 0.0267 (9) | 0.0330 (10) | 0.0065 (6) | 0.0065 (7) | 0.0029 (7) |
C16 | 0.0191 (7) | 0.0205 (8) | 0.0186 (7) | −0.0009 (6) | 0.0015 (6) | 0.0028 (6) |
C21 | 0.0126 (6) | 0.0226 (8) | 0.0157 (7) | 0.0014 (5) | 0.0009 (5) | −0.0016 (6) |
C22 | 0.0178 (7) | 0.0232 (8) | 0.0178 (7) | −0.0002 (6) | 0.0016 (5) | 0.0013 (6) |
C23 | 0.0213 (7) | 0.0244 (8) | 0.0157 (7) | 0.0050 (6) | −0.0010 (6) | 0.0017 (6) |
C24 | 0.0142 (6) | 0.0298 (9) | 0.0204 (8) | 0.0020 (6) | −0.0009 (5) | −0.0026 (7) |
C25 | 0.0150 (7) | 0.0242 (8) | 0.0178 (7) | −0.0024 (6) | 0.0027 (5) | −0.0019 (6) |
C26 | 0.0147 (6) | 0.0213 (8) | 0.0188 (7) | 0.0007 (5) | 0.0011 (5) | 0.0005 (6) |
Cl1—C12 | 1.7397 (17) | C13—C14 | 1.390 (3) |
Cl2—C16 | 1.7417 (17) | C13—H13 | 0.9500 |
Cl3—C23 | 1.7414 (17) | C14—C15 | 1.393 (3) |
Cl4—C25 | 1.7445 (16) | C14—H14 | 0.9500 |
C1—O1 | 1.224 (2) | C15—C16 | 1.395 (2) |
C1—N1 | 1.3796 (19) | C15—H15 | 0.9500 |
C1—C11 | 1.5146 (19) | C21—C26 | 1.400 (2) |
N1—C2 | 1.3967 (18) | C21—C22 | 1.401 (2) |
N1—H1 | 0.82 (2) | C22—C23 | 1.393 (2) |
S1—C2 | 1.6745 (16) | C22—H22 | 0.9500 |
C2—N2 | 1.347 (2) | C23—C24 | 1.391 (2) |
N2—C21 | 1.4186 (18) | C24—C25 | 1.395 (2) |
N2—H2 | 0.91 (2) | C24—H24 | 0.9500 |
C11—C12 | 1.394 (2) | C25—C26 | 1.393 (2) |
C11—C16 | 1.396 (2) | C26—H26 | 0.9500 |
C12—C13 | 1.393 (2) | ||
O1—C1—N1 | 124.54 (14) | C14—C15—C16 | 118.71 (16) |
O1—C1—C11 | 121.70 (13) | C14—C15—H15 | 120.6 |
N1—C1—C11 | 113.75 (13) | C16—C15—H15 | 120.6 |
C1—N1—C2 | 128.18 (14) | C15—C16—C11 | 121.63 (15) |
C1—N1—H1 | 118.9 (15) | C15—C16—Cl2 | 119.48 (13) |
C2—N1—H1 | 112.9 (15) | C11—C16—Cl2 | 118.89 (12) |
N2—C2—N1 | 114.54 (13) | C26—C21—C22 | 120.66 (14) |
N2—C2—S1 | 127.07 (11) | C26—C21—N2 | 122.87 (14) |
N1—C2—S1 | 118.38 (11) | C22—C21—N2 | 116.38 (14) |
C2—N2—C21 | 128.79 (13) | C23—C22—C21 | 118.86 (15) |
C2—N2—H2 | 114.5 (15) | C23—C22—H22 | 120.6 |
C21—N2—H2 | 116.7 (15) | C21—C22—H22 | 120.6 |
C12—C11—C16 | 118.01 (13) | C24—C23—C22 | 122.24 (15) |
C12—C11—C1 | 121.24 (14) | C24—C23—Cl3 | 119.19 (12) |
C16—C11—C1 | 120.72 (14) | C22—C23—Cl3 | 118.57 (13) |
C13—C12—C11 | 121.66 (15) | C23—C24—C25 | 117.16 (14) |
C13—C12—Cl1 | 119.56 (13) | C23—C24—H24 | 121.4 |
C11—C12—Cl1 | 118.78 (11) | C25—C24—H24 | 121.4 |
C14—C13—C12 | 118.88 (16) | C26—C25—C24 | 122.87 (15) |
C14—C13—H13 | 120.6 | C26—C25—Cl4 | 118.19 (13) |
C12—C13—H13 | 120.6 | C24—C25—Cl4 | 118.93 (12) |
C13—C14—C15 | 121.08 (15) | C25—C26—C21 | 118.19 (14) |
C13—C14—H14 | 119.5 | C25—C26—H26 | 120.9 |
C15—C14—H14 | 119.5 | C21—C26—H26 | 120.9 |
O1—C1—N1—C2 | −4.9 (3) | C14—C15—C16—Cl2 | 178.83 (14) |
C11—C1—N1—C2 | 174.63 (15) | C12—C11—C16—C15 | 1.5 (2) |
C1—N1—C2—N2 | −2.2 (2) | C1—C11—C16—C15 | −176.47 (15) |
C1—N1—C2—S1 | 177.27 (14) | C12—C11—C16—Cl2 | −178.89 (12) |
N1—C2—N2—C21 | −173.75 (15) | C1—C11—C16—Cl2 | 3.2 (2) |
S1—C2—N2—C21 | 6.9 (3) | C2—N2—C21—C26 | 30.3 (3) |
O1—C1—C11—C12 | −95.3 (2) | C2—N2—C21—C22 | −152.93 (16) |
N1—C1—C11—C12 | 85.17 (19) | C26—C21—C22—C23 | −1.2 (2) |
O1—C1—C11—C16 | 82.6 (2) | N2—C21—C22—C23 | −178.08 (14) |
N1—C1—C11—C16 | −96.94 (18) | C21—C22—C23—C24 | 0.2 (2) |
C16—C11—C12—C13 | −0.1 (2) | C21—C22—C23—Cl3 | −178.45 (12) |
C1—C11—C12—C13 | 177.83 (15) | C22—C23—C24—C25 | 1.1 (2) |
C16—C11—C12—Cl1 | 179.03 (12) | Cl3—C23—C24—C25 | 179.77 (12) |
C1—C11—C12—Cl1 | −3.0 (2) | C23—C24—C25—C26 | −1.5 (2) |
C11—C12—C13—C14 | −1.1 (3) | C23—C24—C25—Cl4 | 179.11 (12) |
Cl1—C12—C13—C14 | 179.72 (14) | C24—C25—C26—C21 | 0.5 (2) |
C12—C13—C14—C15 | 1.1 (3) | Cl4—C25—C26—C21 | 179.94 (12) |
C13—C14—C15—C16 | 0.2 (3) | C22—C21—C26—C25 | 0.9 (2) |
C14—C15—C16—C11 | −1.5 (3) | N2—C21—C26—C25 | 177.49 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1 | 0.91 (2) | 1.89 (2) | 2.6581 (17) | 141 (2) |
N1—H1···S1i | 0.82 (2) | 2.57 (2) | 3.3653 (14) | 163 (2) |
Symmetry code: (i) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C14H8Cl4N2OS |
Mr | 394.08 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 14.7737 (13), 10.3744 (6), 10.6935 (11) |
β (°) | 97.250 (7) |
V (Å3) | 1625.9 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.86 |
Crystal size (mm) | 0.42 × 0.38 × 0.21 |
Data collection | |
Diffractometer | Stoe IPDSII two-circle diffractometer |
Absorption correction | Multi-scan (MULABS; Spek, 2003; Blessing, 1995) |
Tmin, Tmax | 0.715, 0.841 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12823, 3724, 3306 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.087, 1.05 |
No. of reflections | 3724 |
No. of parameters | 208 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.36 |
Computer programs: X-AREA (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL-Plus (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1 | 0.91 (2) | 1.89 (2) | 2.6581 (17) | 141 (2) |
N1—H1···S1i | 0.82 (2) | 2.57 (2) | 3.3653 (14) | 163 (2) |
Symmetry code: (i) −x+1, −y+1, −z. |
Acknowledgements
MKR is grateful to the HEC-Pakistan for financial support for the PhD program under scholarship No. [ILC–0363104].
References
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Aliphatic and acylthioureas are well known for their fungicidal,antiviral, pesticidal and plant-growth regulating activities (Upadlgaya & Srivastava, 1982; Wegner et al., 1986). Symmetrical and unsymmetrical thioureas have shown antifungal activity against the plant pathogens Pyricularia oryzae and Drechslera oryzae (Krishnamurthy et al., 1999). The background to this study has been set out in our previous work on the structural and biological chemistry of chloro substituted N,N'-disubstituted thioureas (Khawar Rauf et al., 2006a; 2007).The biological studies of these thiourea derivatives are under investigation. Herein, as a continuation of these studies, the structure of the title compound (I) is described (Fig. 1). Bond lengths and angles, can be regarded as typical for N,N'-disubstituted thiourea compounds as found in the Cambridge Structural Database v5.28 (Allen, 2002; Khawar Rauf et al., 2006b; Arslan et al., 2004; Yamin & Yusof, 2003).The molecule exists in the thione form with typical thiourea C—S and C—O bonds, as well as shortened C—N bond lengths. The thiocarbonyl and carbonyl groups are almost coplanar. The molecule features an intramolecular N—H···O hydrogen bond and in the crystal structure, molecules associate via N—H···S intermolecular hydrogen bonds to form centrosymmetric dimers (Table 1; Fig 2).In addition to the intramolecular hydrogen bond, O1 is involved in a short O···Cl contact [O1···Cl2i: 3.0936 (14) Å, symmetry operator i: 1 - x, 1 - y, 1 - z].