organic compounds
Benzoic acid–2,2′-biimidazole (2/1)
aDepartment of Chemistry, Taiyuan Normal College, Taiyuan, Shanxi 030031, People's Republic of China, and bInstitute of Molecular Science, Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Shanxi University, Taiyuan, Shanxi 030006, People's Republic of China
*Correspondence e-mail: miaoli@sxu.edu.cn
In the title compound, C6H6N4·2C7H6O2, the contains a half-molecule of biimidazole and one benzoic acid molecule. The contains two biimidazole molecules and four benzoic acid molecules, giving the reported 2:1 ratio of benzoic acid to biimidazole. The biimidazole molecule is located on an inversion center (passing through the central C—C bond). Strong N—H⋯O and O—H⋯N hydrogen bonds link the benzoic acid molecules with the neutral biimidazole molecules, which lie in planar sheets. In the crystal packing, the parallel sheets are related by a twofold rotation axis and an inversion centre, respectively, forming an interwoven three-dimensional network via weak C=O⋯π intermolecular interactions between neighboring molecules.
Related literature
For background to the use of 2,2′-biimidazoles in crystal engineering, see: Matthews et al. (1990); Tadokoro & Nakasuji (2000). For similar structures, see: Gao et al. (2009); Li & Yang (2006); Mori & Miyoshi (2004).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC.
Supporting information
https://doi.org/10.1107/S1600536810045368/fl2323sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810045368/fl2323Isup2.hkl
Benzoic acid (0.25 g, 2 mmol) and biimidazole (1 mmol) were dissolved in water(10 ml) by adding 1.4 ml of 2 M HCl while stirring. The solutions were stirred for 1 h, then filtered. Filtrate was left to stand at room temperature. Crystals suitable for data collection appeared after a few weeks by slow evaporation of the aqueous solvent.
H atoms attached to C atoms were placed in geometrically idealized positions, with Csp2 = 0.93 Å, and constrained to ride on their carrier atoms, with Uiso(H) = 1.2Ueq(C). H atoms attached to N1 and O1 atoms were located in difference Fourier maps and refined with Uiso(H for N) = 0.06 Å2 and Uiso(H) = 1.5Ueq(O); N—H distance is 0.88 (5) Å and the O—H distance is 0.856 Å.
Compounds containing the 2,2'-biimidazole moiety have been the focus of several investigations not only due to their biological activity, but also due to their contribution to the field of crystal engineering (Matthews, et al. 1990; Tadokoro & Nakasuji, 2000). In these compunds weak interactions, such as C—H···O and C=O···π, play crucial roles in building the overall three-dimensional structure (Mori & Miyoshi, 2004; Li & Yang, 2006; Gao et al., 2009).
The π (see Table 1, Cg1 for centre of N1/C1/N2/C3/C2) interactions between neighboring molecules and arrange alternatively and across along b and c axis in two-dimensional structure, and the dihedral angle of the planes are 92.7°. In contrast, two groups of these parallel layers on a twofold rotation axis and inversion centre forming a zigzag conformation along c axis in whole three-dimensional network as shown in Fig. 3.
of compound (I) contains one benzoic acid and 1/2 neutral biimidazole molecule, in which the imidazole rings are coplanar (Fig. 1). Each biimidazole molecule is linked to two benzoic acids via strong N—H···O and O—H···N hydrogen bonds (Table 1) twithin planar sheets (Figure 2). These sheets further assemble to layers via weak C=O···For background to the use of 2,2'-biimidazoles in crystal engineering, see: Matthews et al. (1990); Tadokoro & Nakasuji (2000). For similar structures, see: Gao et al. (2009); Li & Yang (2006); Mori & Miyoshi (2004).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and SHELXL97 (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC (Sheldrick, 2008).C6H6N4·2C7H6O2 | F(000) = 396 |
Mr = 378.38 | Dx = 1.367 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 698 reflections |
a = 11.232 (5) Å | θ = 2.5–20.8° |
b = 5.082 (2) Å | µ = 0.10 mm−1 |
c = 16.342 (7) Å | T = 298 K |
β = 99.832 (6)° | Block, colorless |
V = 919.2 (7) Å3 | 0.40 × 0.20 × 0.10 mm |
Z = 2 |
Bruker SMART 1K CCD area-detector diffractometer | 1550 independent reflections |
Radiation source: fine-focus sealed tube | 1243 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.047 |
ω scans | θmax = 25.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −13→12 |
Tmin = 0.962, Tmax = 0.990 | k = −6→2 |
3367 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.098 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.188 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.25 | w = 1/[σ2(Fo2) + (0.0425P)2 + 1.0781P] where P = (Fo2 + 2Fc2)/3 |
1550 reflections | (Δ/σ)max < 0.001 |
131 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C6H6N4·2C7H6O2 | V = 919.2 (7) Å3 |
Mr = 378.38 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.232 (5) Å | µ = 0.10 mm−1 |
b = 5.082 (2) Å | T = 298 K |
c = 16.342 (7) Å | 0.40 × 0.20 × 0.10 mm |
β = 99.832 (6)° |
Bruker SMART 1K CCD area-detector diffractometer | 1550 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 1243 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.990 | Rint = 0.047 |
3367 measured reflections |
R[F2 > 2σ(F2)] = 0.098 | 0 restraints |
wR(F2) = 0.188 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.25 | Δρmax = 0.20 e Å−3 |
1550 reflections | Δρmin = −0.19 e Å−3 |
131 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3655 (3) | 0.6966 (8) | 0.4607 (2) | 0.0406 (10) | |
H1 | 0.383 (4) | 0.809 (10) | 0.423 (3) | 0.064 (17)* | |
N2 | 0.3784 (3) | 0.3740 (7) | 0.5510 (2) | 0.0389 (9) | |
C1 | 0.4360 (4) | 0.5176 (8) | 0.5031 (2) | 0.0307 (10) | |
C2 | 0.2533 (4) | 0.6694 (10) | 0.4821 (3) | 0.0436 (12) | |
H2 | 0.1846 | 0.7679 | 0.4624 | 0.052* | |
C3 | 0.2630 (4) | 0.4717 (10) | 0.5372 (3) | 0.0453 (12) | |
H3 | 0.2003 | 0.4097 | 0.5625 | 0.054* | |
C4 | 0.4969 (4) | 0.1219 (9) | 0.3172 (3) | 0.0376 (11) | |
C5 | 0.4964 (4) | 0.3271 (9) | 0.2521 (2) | 0.0347 (10) | |
C6 | 0.5982 (4) | 0.3745 (10) | 0.2158 (3) | 0.0451 (12) | |
H6 | 0.6687 | 0.2790 | 0.2329 | 0.054* | |
C7 | 0.5946 (4) | 0.5616 (10) | 0.1549 (3) | 0.0516 (13) | |
H7 | 0.6625 | 0.5916 | 0.1308 | 0.062* | |
C8 | 0.4913 (4) | 0.7050 (10) | 0.1294 (3) | 0.0491 (13) | |
H8 | 0.4897 | 0.8321 | 0.0883 | 0.059* | |
C9 | 0.3913 (4) | 0.6618 (10) | 0.1641 (3) | 0.0458 (12) | |
H9 | 0.3216 | 0.7595 | 0.1468 | 0.055* | |
C10 | 0.3934 (4) | 0.4739 (10) | 0.2247 (3) | 0.0441 (12) | |
H10 | 0.3244 | 0.4447 | 0.2478 | 0.053* | |
O1 | 0.5977 (3) | −0.0029 (7) | 0.3367 (2) | 0.0532 (10) | |
H1A | 0.5971 | −0.1186 | 0.3747 | 0.080* | |
O2 | 0.4086 (3) | 0.0801 (7) | 0.3491 (2) | 0.0517 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.043 (2) | 0.037 (2) | 0.042 (2) | −0.0004 (19) | 0.0097 (18) | 0.009 (2) |
N2 | 0.041 (2) | 0.035 (2) | 0.043 (2) | −0.0011 (18) | 0.0116 (17) | 0.0088 (19) |
C1 | 0.044 (2) | 0.022 (2) | 0.027 (2) | 0.003 (2) | 0.0077 (19) | 0.0055 (19) |
C2 | 0.037 (3) | 0.048 (3) | 0.046 (3) | 0.004 (2) | 0.007 (2) | 0.000 (3) |
C3 | 0.032 (2) | 0.057 (3) | 0.048 (3) | 0.000 (2) | 0.009 (2) | 0.011 (3) |
C4 | 0.041 (3) | 0.029 (2) | 0.043 (3) | −0.004 (2) | 0.009 (2) | −0.002 (2) |
C5 | 0.038 (2) | 0.032 (3) | 0.034 (2) | −0.004 (2) | 0.0064 (19) | −0.005 (2) |
C6 | 0.037 (3) | 0.046 (3) | 0.053 (3) | 0.002 (2) | 0.012 (2) | 0.008 (3) |
C7 | 0.048 (3) | 0.052 (3) | 0.060 (3) | −0.001 (3) | 0.024 (2) | 0.013 (3) |
C8 | 0.051 (3) | 0.048 (3) | 0.049 (3) | −0.003 (3) | 0.008 (2) | 0.013 (3) |
C9 | 0.036 (3) | 0.046 (3) | 0.054 (3) | 0.006 (2) | 0.004 (2) | 0.009 (3) |
C10 | 0.033 (2) | 0.055 (3) | 0.046 (3) | −0.005 (2) | 0.013 (2) | 0.002 (3) |
O1 | 0.0371 (17) | 0.058 (2) | 0.065 (2) | 0.0067 (18) | 0.0089 (15) | 0.0244 (19) |
O2 | 0.0465 (19) | 0.051 (2) | 0.063 (2) | 0.0094 (17) | 0.0220 (16) | 0.0155 (18) |
N1—C1 | 1.322 (5) | C5—C10 | 1.385 (6) |
N1—C2 | 1.371 (5) | C5—C6 | 1.397 (6) |
N1—H1 | 0.88 (5) | C6—C7 | 1.371 (6) |
N2—C1 | 1.319 (5) | C6—H6 | 0.9300 |
N2—C3 | 1.370 (5) | C7—C8 | 1.374 (6) |
C1—C1i | 1.469 (8) | C7—H7 | 0.9300 |
C2—C3 | 1.342 (6) | C8—C9 | 1.359 (6) |
C2—H2 | 0.9300 | C8—H8 | 0.9300 |
C3—H3 | 0.9300 | C9—C10 | 1.373 (6) |
C4—O2 | 1.216 (5) | C9—H9 | 0.9300 |
C4—O1 | 1.289 (5) | C10—H10 | 0.9300 |
C4—C5 | 1.489 (6) | O1—H1A | 0.8564 |
C1—N1—C2 | 106.9 (4) | C6—C5—C4 | 121.4 (4) |
C1—N1—H1 | 129 (3) | C7—C6—C5 | 120.1 (4) |
C2—N1—H1 | 124 (3) | C7—C6—H6 | 119.9 |
C1—N2—C3 | 104.4 (4) | C5—C6—H6 | 119.9 |
N2—C1—N1 | 112.4 (4) | C6—C7—C8 | 120.5 (4) |
N2—C1—C1i | 124.0 (5) | C6—C7—H7 | 119.8 |
N1—C1—C1i | 123.6 (5) | C8—C7—H7 | 119.8 |
C3—C2—N1 | 105.9 (4) | C9—C8—C7 | 120.2 (5) |
C3—C2—H2 | 127.0 | C9—C8—H8 | 119.9 |
N1—C2—H2 | 127.0 | C7—C8—H8 | 119.9 |
C2—C3—N2 | 110.4 (4) | C8—C9—C10 | 120.0 (4) |
C2—C3—H3 | 124.8 | C8—C9—H9 | 120.0 |
N2—C3—H3 | 124.8 | C10—C9—H9 | 120.0 |
O2—C4—O1 | 123.6 (4) | C9—C10—C5 | 121.2 (4) |
O2—C4—C5 | 121.7 (4) | C9—C10—H10 | 119.4 |
O1—C4—C5 | 114.7 (4) | C5—C10—H10 | 119.4 |
C10—C5—C6 | 118.0 (4) | C4—O1—H1A | 113.7 |
C10—C5—C4 | 120.6 (4) | ||
C3—N2—C1—N1 | 0.0 (5) | O1—C4—C5—C6 | 0.5 (6) |
C3—N2—C1—C1i | −179.6 (5) | C10—C5—C6—C7 | 0.0 (7) |
C2—N1—C1—N2 | 0.0 (5) | C4—C5—C6—C7 | 178.9 (4) |
C2—N1—C1—C1i | 179.6 (5) | C5—C6—C7—C8 | 0.4 (7) |
C1—N1—C2—C3 | 0.0 (5) | C6—C7—C8—C9 | −0.3 (8) |
N1—C2—C3—N2 | 0.0 (5) | C7—C8—C9—C10 | −0.1 (7) |
C1—N2—C3—C2 | 0.0 (5) | C8—C9—C10—C5 | 0.5 (7) |
O2—C4—C5—C10 | −1.3 (6) | C6—C5—C10—C9 | −0.4 (7) |
O1—C4—C5—C10 | 179.3 (4) | C4—C5—C10—C9 | −179.3 (4) |
O2—C4—C5—C6 | 179.8 (4) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Cg1 is the centroid of the [please define] ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N2ii | 0.86 | 1.77 | 2.613 (5) | 170 |
N1—H1···O2iii | 0.88 (5) | 1.89 (5) | 2.767 (5) | 173 (5) |
C4—O2···Cg1 | 1.22 (1) | 3.67 (1) | 4.388 (2) | 118 (1) |
Symmetry codes: (ii) −x+1, −y, −z+1; (iii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C6H6N4·2C7H6O2 |
Mr | 378.38 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 11.232 (5), 5.082 (2), 16.342 (7) |
β (°) | 99.832 (6) |
V (Å3) | 919.2 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.40 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.962, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3367, 1550, 1243 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.098, 0.188, 1.25 |
No. of reflections | 1550 |
No. of parameters | 131 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and SHELXL97 (Sheldrick, 2008), SHELXTL/PC (Sheldrick, 2008).
Cg1 is the centroid of the [please define] ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···N2i | 0.86 | 1.77 | 2.613 (5) | 169.6 |
N1—H1···O2ii | 0.88 (5) | 1.89 (5) | 2.767 (5) | 173 (5) |
C4—O2···Cg1 | 1.216 (5) | 3.674 (2) | 4.388 (2) | 118.37 (6) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, y+1, z. |
Acknowledgements
This work was supported financially by the Natural Science Foundation of Shanxi Province of China (grant No. 2010011011–2).
References
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Compounds containing the 2,2'-biimidazole moiety have been the focus of several investigations not only due to their biological activity, but also due to their contribution to the field of crystal engineering (Matthews, et al. 1990; Tadokoro & Nakasuji, 2000). In these compunds weak interactions, such as C—H···O and C=O···π, play crucial roles in building the overall three-dimensional structure (Mori & Miyoshi, 2004; Li & Yang, 2006; Gao et al., 2009).
The asymmetric unit of compound (I) contains one benzoic acid and 1/2 neutral biimidazole molecule, in which the imidazole rings are coplanar (Fig. 1). Each biimidazole molecule is linked to two benzoic acids via strong N—H···O and O—H···N hydrogen bonds (Table 1) twithin planar sheets (Figure 2). These sheets further assemble to layers via weak C=O···π (see Table 1, Cg1 for centre of N1/C1/N2/C3/C2) interactions between neighboring molecules and arrange alternatively and across along b and c axis in two-dimensional structure, and the dihedral angle of the planes are 92.7°. In contrast, two groups of these parallel layers on a twofold rotation axis and inversion centre forming a zigzag conformation along c axis in whole three-dimensional network as shown in Fig. 3.