organic compounds
1-{5-[2-Chloro-5-(trifluoromethyl)phenyl]thiophen-2-yl}ethanone
aDepartment of Organic Chemistry, Ivan Franko National University of Lviv, Kyryla and Mefodiya 6, Lviv 79005, Ukraine, and bFaculty of Chemistry, University of Wrocław, 14 Joliot-Curie St, 50-383 Wrocław, Poland
*Correspondence e-mail: horrak@gmail.com
In the title molecule, C13H8ClF3OS, the dihedral angle between the mean planes of 2-chloro-5-(trifluoromethyl)phenyl and tiophene rings is 54.37 (5)°. The acethyl group is twisted by 8.1 (2)° with respect to the thiophene ring. The CF3 group is disordered over two sets of sites with occupations of 0.49 (3) and 0.51 (3). The crystal packing features C—H⋯F and C—H⋯O hydrogen bonds, forming dimers which are connected into chains along the c axis by C—H⋯O hydrogen bonds and C—Cl⋯π [Cl⋯π = 3.415 (1) Å and C—Cl⋯π = 151.56 (5)°] interactions. The chains are further connected into layers perpendicular to the a axis by C—H⋯O interactions.
Related literature
For the general synthetic procedure, see: Matiychuk et al. (2010). For the biologial activity of arylthiophenes, see: Reddy et al. (2005); Anderson et al. (1963); Bohlmann et al. (1984); Michaelides et al. (1997); Tanaka et al. (1998) and for their applications, see Masui et al. (2004); Roncali (1992, 1997). For methods of obtaining arylthiophenes via cross-coupling reactions, see: Stanforth (1998).
Experimental
Crystal data
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Refinement
|
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811003965/ds2088sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811003965/ds2088Isup2.hkl
Water solution of 7 g of NaNO2 (25 ml) was added dropwise to a cooled stirred mixture of 2-chloro-5-trifluoromethylaniline (19.5 g, 0.1 mol, Fluka) and 60 ml of 20% HCl. After completion of reaction the solution was filtered and added dropwise to well stirred mixture of 2-acetylthiophene (12.6 g, 0.1 mol, Fluka), acetone (40 ml) and CuCl2.2H2O (1.5 g, 8.7 mmol) during 20 min. After 3 h the reaction mixture was diluted with 250 ml of water and 50 ml of CHCl3, organic layer was separated and dried over Na2SO4, and concentrated under reduced pressure. Residue was distilled at 400 Pa (453–458 K) and gave 11.6 g (38% yield) of 1-{5-[2-chloro-5-(trifluoromethyl)phenyl]-2-thienyl}ethanone. Yellow crystals suitable for X-ray analysis were obtained by recrystallization from n-hexane.
All H atoms were found in difference-Fourier maps. In the final
cycles, all H atoms were positioned geometrically and treated as riding atoms, with C–H distance of 0.95 Å and with Uiso(H) values of 1.2Ueq(C).Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C13H8ClF3OS | F(000) = 616 |
Mr = 304.70 | Dx = 1.594 Mg m−3 |
Monoclinic, P21/c | Melting point: 347 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 15.330 (6) Å | Cell parameters from 11592 reflections |
b = 10.809 (4) Å | θ = 2.3–33.9° |
c = 7.676 (3) Å | µ = 0.49 mm−1 |
β = 93.72 (3)° | T = 100 K |
V = 1269.3 (8) Å3 | Block, colourless |
Z = 4 | 0.20 × 0.15 × 0.08 mm |
Kuma KM-4-CCD diffractometer | 4377 independent reflections |
Radiation source: fine-focus sealed tube | 3093 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
ω scans | θmax = 33.8°, θmin = 3.3° |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006) | h = −19→23 |
Tmin = 0.86, Tmax = 0.93 | k = −12→16 |
16021 measured reflections | l = −11→9 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.054P)2] where P = (Fo2 + 2Fc2)/3 |
4377 reflections | (Δ/σ)max = 0.001 |
201 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C13H8ClF3OS | V = 1269.3 (8) Å3 |
Mr = 304.70 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 15.330 (6) Å | µ = 0.49 mm−1 |
b = 10.809 (4) Å | T = 100 K |
c = 7.676 (3) Å | 0.20 × 0.15 × 0.08 mm |
β = 93.72 (3)° |
Kuma KM-4-CCD diffractometer | 4377 independent reflections |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2006) | 3093 reflections with I > 2σ(I) |
Tmin = 0.86, Tmax = 0.93 | Rint = 0.034 |
16021 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.49 e Å−3 |
4377 reflections | Δρmin = −0.25 e Å−3 |
201 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.09807 (2) | 0.28619 (3) | 1.05277 (5) | 0.02440 (10) | |
S1 | 0.37102 (2) | 0.42596 (3) | 1.04508 (5) | 0.01971 (9) | |
O1 | 0.54239 (7) | 0.39388 (9) | 1.24469 (14) | 0.0261 (2) | |
C2 | 0.42729 (9) | 0.29067 (12) | 1.08963 (19) | 0.0181 (3) | |
C21 | 0.51398 (9) | 0.29623 (12) | 1.18365 (19) | 0.0208 (3) | |
C22 | 0.56531 (10) | 0.17781 (14) | 1.1983 (2) | 0.0276 (3) | |
H22A | 0.5812 | 0.1521 | 1.0821 | 0.041* | |
H22B | 0.5297 | 0.1133 | 1.2485 | 0.041* | |
H22C | 0.6185 | 0.1909 | 1.2738 | 0.041* | |
C3 | 0.37969 (9) | 0.18899 (12) | 1.02942 (19) | 0.0194 (3) | |
H3 | 0.4000 | 0.1062 | 1.0413 | 0.023* | |
C4 | 0.29753 (9) | 0.22147 (12) | 0.94833 (19) | 0.0192 (3) | |
H4 | 0.2562 | 0.1630 | 0.9010 | 0.023* | |
C5 | 0.28396 (9) | 0.34750 (11) | 0.94559 (18) | 0.0160 (3) | |
C51 | 0.20972 (9) | 0.41760 (11) | 0.86157 (18) | 0.0164 (3) | |
C52 | 0.12277 (9) | 0.39514 (12) | 0.89694 (18) | 0.0179 (3) | |
C53 | 0.05343 (9) | 0.45875 (12) | 0.81028 (19) | 0.0192 (3) | |
H53 | −0.0051 | 0.4413 | 0.8357 | 0.023* | |
C54 | 0.07070 (9) | 0.54733 (12) | 0.68726 (19) | 0.0198 (3) | |
H54 | 0.0241 | 0.5907 | 0.6270 | 0.024* | |
C55 | 0.15699 (9) | 0.57247 (12) | 0.65236 (18) | 0.0192 (3) | |
C1 | 0.17567 (10) | 0.66394 (15) | 0.5124 (2) | 0.0289 (4) | |
F1 | 0.2540 (6) | 0.7124 (13) | 0.528 (2) | 0.049 (3) | 0.49 (3) |
F2 | 0.1209 (7) | 0.7645 (7) | 0.5195 (13) | 0.0485 (17) | 0.49 (3) |
F3 | 0.1634 (9) | 0.6244 (10) | 0.3552 (8) | 0.059 (2) | 0.49 (3) |
F1A | 0.2471 (7) | 0.7292 (12) | 0.549 (2) | 0.052 (2) | 0.51 (3) |
F2A | 0.1125 (5) | 0.7352 (16) | 0.465 (2) | 0.070 (3) | 0.51 (3) |
F3A | 0.1942 (11) | 0.5975 (8) | 0.3643 (11) | 0.079 (2) | 0.51 (3) |
C56 | 0.22588 (9) | 0.50955 (12) | 0.73913 (18) | 0.0189 (3) | |
H56 | 0.2843 | 0.5290 | 0.7153 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01931 (18) | 0.02759 (17) | 0.0267 (2) | −0.00030 (13) | 0.00436 (14) | 0.00743 (14) |
S1 | 0.01739 (17) | 0.01659 (14) | 0.0246 (2) | −0.00050 (12) | −0.00288 (13) | 0.00172 (13) |
O1 | 0.0217 (5) | 0.0253 (5) | 0.0307 (6) | −0.0040 (4) | −0.0041 (5) | 0.0034 (4) |
C2 | 0.0151 (6) | 0.0200 (6) | 0.0193 (7) | 0.0012 (5) | 0.0017 (5) | 0.0023 (5) |
C21 | 0.0178 (7) | 0.0234 (6) | 0.0214 (8) | −0.0002 (5) | 0.0024 (6) | 0.0072 (5) |
C22 | 0.0194 (7) | 0.0266 (7) | 0.0362 (10) | 0.0026 (6) | −0.0034 (7) | 0.0065 (6) |
C3 | 0.0184 (7) | 0.0194 (6) | 0.0208 (7) | 0.0027 (5) | 0.0033 (6) | 0.0005 (5) |
C4 | 0.0201 (7) | 0.0185 (6) | 0.0189 (7) | −0.0012 (5) | 0.0009 (6) | −0.0014 (5) |
C5 | 0.0154 (6) | 0.0177 (5) | 0.0149 (7) | −0.0002 (5) | 0.0009 (5) | −0.0005 (5) |
C51 | 0.0164 (6) | 0.0170 (5) | 0.0158 (7) | 0.0011 (5) | 0.0002 (5) | −0.0031 (5) |
C52 | 0.0185 (7) | 0.0190 (5) | 0.0163 (7) | 0.0000 (5) | 0.0009 (5) | −0.0009 (5) |
C53 | 0.0138 (6) | 0.0234 (6) | 0.0203 (7) | 0.0012 (5) | 0.0007 (5) | −0.0041 (5) |
C54 | 0.0182 (7) | 0.0217 (6) | 0.0190 (7) | 0.0028 (5) | −0.0027 (6) | −0.0021 (5) |
C55 | 0.0200 (7) | 0.0200 (6) | 0.0174 (7) | 0.0005 (5) | 0.0005 (5) | 0.0003 (5) |
C1 | 0.0219 (8) | 0.0343 (8) | 0.0300 (9) | 0.0007 (6) | −0.0013 (7) | 0.0102 (7) |
F1 | 0.015 (2) | 0.068 (5) | 0.062 (5) | 0.000 (3) | −0.003 (2) | 0.043 (4) |
F2 | 0.050 (3) | 0.038 (2) | 0.059 (4) | 0.0255 (18) | 0.020 (2) | 0.0291 (19) |
F3 | 0.115 (6) | 0.043 (3) | 0.0173 (15) | −0.024 (3) | −0.005 (2) | 0.0037 (17) |
F1A | 0.053 (5) | 0.049 (3) | 0.053 (3) | −0.029 (3) | −0.008 (3) | 0.022 (2) |
F2A | 0.0206 (16) | 0.093 (6) | 0.099 (7) | 0.016 (3) | 0.010 (3) | 0.074 (5) |
F3A | 0.160 (6) | 0.051 (2) | 0.029 (2) | 0.010 (4) | 0.037 (3) | 0.0148 (18) |
C56 | 0.0169 (7) | 0.0211 (6) | 0.0189 (7) | −0.0004 (5) | 0.0018 (5) | −0.0017 (5) |
Cl1—C52 | 1.738 (2) | C51—C56 | 1.401 (2) |
S1—C5 | 1.718 (2) | C52—C53 | 1.398 (2) |
S1—C2 | 1.721 (2) | C53—C54 | 1.382 (2) |
O1—C21 | 1.224 (2) | C53—H53 | 0.9500 |
C2—C3 | 1.382 (2) | C54—C55 | 1.393 (2) |
C2—C21 | 1.472 (2) | C54—H54 | 0.9500 |
C21—C22 | 1.503 (2) | C55—C56 | 1.389 (2) |
C22—H22A | 0.9800 | C55—C1 | 1.501 (2) |
C22—H22B | 0.9800 | C1—F2A | 1.272 (8) |
C22—H22C | 0.9800 | C1—F3 | 1.282 (8) |
C3—C4 | 1.413 (2) | C1—F1 | 1.309 (10) |
C3—H3 | 0.9500 | C1—F1A | 1.317 (11) |
C4—C5 | 1.378 (2) | C1—F2 | 1.377 (7) |
C4—H4 | 0.9500 | C1—F3A | 1.389 (8) |
C5—C51 | 1.480 (2) | C56—H56 | 0.9500 |
C51—C52 | 1.399 (2) | ||
C5—S1—C2 | 91.94 (7) | C53—C52—Cl1 | 117.91 (11) |
C3—C2—C21 | 129.54 (12) | C51—C52—Cl1 | 120.28 (11) |
C3—C2—S1 | 111.25 (11) | C54—C53—C52 | 119.50 (13) |
C21—C2—S1 | 119.20 (10) | C54—C53—H53 | 120.3 |
O1—C21—C2 | 120.70 (13) | C52—C53—H53 | 120.3 |
O1—C21—C22 | 122.31 (14) | C53—C54—C55 | 119.52 (13) |
C2—C21—C22 | 116.98 (12) | C53—C54—H54 | 120.2 |
C21—C22—H22A | 109.5 | C55—C54—H54 | 120.2 |
C21—C22—H22B | 109.5 | C56—C55—C54 | 120.92 (13) |
H22A—C22—H22B | 109.5 | C56—C55—C1 | 119.42 (13) |
C21—C22—H22C | 109.5 | C54—C55—C1 | 119.58 (13) |
H22A—C22—H22C | 109.5 | F3—C1—F1 | 107.4 (8) |
H22B—C22—H22C | 109.5 | F2A—C1—F1A | 110.1 (7) |
C2—C3—C4 | 112.70 (12) | F3—C1—F2 | 104.4 (6) |
C2—C3—H3 | 123.7 | F1—C1—F2 | 103.8 (7) |
C4—C3—H3 | 123.7 | F2A—C1—F3A | 105.6 (6) |
C5—C4—C3 | 112.45 (12) | F1A—C1—F3A | 103.8 (8) |
C5—C4—H4 | 123.8 | F2A—C1—C55 | 115.3 (4) |
C3—C4—H4 | 123.8 | F3—C1—C55 | 115.5 (4) |
C4—C5—C51 | 128.60 (12) | F1—C1—C55 | 114.4 (6) |
C4—C5—S1 | 111.66 (10) | F1A—C1—C55 | 113.4 (6) |
C51—C5—S1 | 119.62 (10) | F2—C1—C55 | 110.3 (4) |
C52—C51—C56 | 117.75 (12) | F3A—C1—C55 | 107.7 (4) |
C52—C51—C5 | 122.83 (12) | C55—C56—C51 | 120.46 (13) |
C56—C51—C5 | 119.41 (12) | C55—C56—H56 | 119.8 |
C53—C52—C51 | 121.81 (13) | C51—C56—H56 | 119.8 |
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22C···F1Ai | 0.98 | 2.55 | 3.520 (13) | 168 |
C22—H22B···O1ii | 0.98 | 2.62 | 3.526 (2) | 154 |
C22—H22A···O1iii | 0.98 | 2.67 | 3.562 (3) | 152 |
C56—H56···O1i | 0.95 | 2.78 | 3.697 (2) | 162 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, y−1/2, −z+5/2; (iii) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H8ClF3OS |
Mr | 304.70 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 15.330 (6), 10.809 (4), 7.676 (3) |
β (°) | 93.72 (3) |
V (Å3) | 1269.3 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.49 |
Crystal size (mm) | 0.20 × 0.15 × 0.08 |
Data collection | |
Diffractometer | Kuma KM-4-CCD diffractometer |
Absorption correction | Analytical (CrysAlis RED; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.86, 0.93 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16021, 4377, 3093 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.782 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.097, 1.00 |
No. of reflections | 4377 |
No. of parameters | 201 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.49, −0.25 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22C···F1Ai | 0.98 | 2.55 | 3.520 (13) | 168 |
C22—H22B···O1ii | 0.98 | 2.62 | 3.526 (2) | 154 |
C22—H22A···O1iii | 0.98 | 2.67 | 3.562 (3) | 152 |
C56—H56···O1i | 0.95 | 2.78 | 3.697 (2) | 162 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+1, y−1/2, −z+5/2; (iii) x, −y+1/2, z−1/2. |
Acknowledgements
The authors acknowledge Professor T. Lis (University of Wroclaw) for providing the X-ray data collection faciltities.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Arylthiophenes and their homologues are an important class of organic compounds. The arylthiophenes units are represented in several types of compounds of current interest including polymers (Roncali, 1992; Roncali, 1997), liquid crystals (Masui et al., 2004), ligands and molecules of medicinal interest (Michaelides et al., 1997; Tanaka et al., 1998; Reddy et al., 2005; Anderson et al., 1963). In view of the arylthiophenes importance a number of catalytic methods of these compounds formation from precursors in a cross-coupling reactions have been developed over the last two decades (Stanforth, 1998). However, these methods proceed in two steps via an organometallic intermediate and their stability is often limited.
The molecule of the title compound is not plannar (see Fig. 1). The dihedral angle between the mean planes of 2-chloro-5-(trifluoromethyl)phenyl and tiophene rings is equal to 54.37 (5)°. The acethyl group is twisted with respect to the tiophene ring by 8.1 (2)°. The CF3 group is disordered with almoust equal occupations of two positions, which are realised by the rotation around C1–C55 bond. The crystal structure packing is governed by the hydrogen bonds of C–H···F and C–H···O types and C–Cl···π interactions. The centrosymmetric dimers are formed by the pairs of C22–H22C···F1Ai and C56–H56···O1i hydrogen bonds. The dimers are connected into the chains that propagate along z axis direction by means of C22–H22A···O1iii hydrogen bonds and C52–Cl1···Cgiv interactions (symmetry code: (iv) x, 1/2 - y, z + 1/2). The geometrical parameters of C52–Cl1···Cgiv interaction are as follows: Cl1···Cgiv distance is equal to 3.415 (1) Å and the C52–Cl1···Cgiv angle 151.56 (5)°. The vast layers perpendicular to x axis direction are formed of above mentioned chains connected with each other by C22–H22B···O1ii hydrogen bonds (see Fig. 2).