research communications
and Hirshfeld surface analysis of 5-acetyl-2-amino-4-(4-bromophenyl)-6-oxo-1-phenyl-1,4,5,6-tetrahydropyridine-3-carbonitrile
aDepartment of Chemistry, Baku State University, 23 Z. Khalilov str., Az, 1148 Baku, Azerbaijan, bPeoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklay str., Moscow, 117198, Russian Federation, cN. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, 119991 Moscow, Russian Federation, dDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey, and eAcad. Sci. Republ. Tajikistan, Kh. Yu. Yusufbekov Pamir Biol. Inst., 1 Kholdorova str., 736002, Khorog, Gbao, Tajikistan
*Correspondence e-mail: anzurat2003@mail.ru
The 20H16BrN3O2, was determined using an Its comprises two crystallographically independent molecules (A and B) being the Both molecules are linked by pairs of N—H⋯O hydrogen bonds, forming a dimer with an R22(16) ring motif. The dimers are connected by further N—H⋯O and N—H⋯N hydrogen bonds, forming chains along the c-axis direction·C—Br⋯π interactions between these chains contribute to the stabilization of the molecular packing. Hirshfeld surface analysis showed that the most important contributions to the crystal packing are from H⋯H, C⋯H/H⋯C, O⋯H/H⋯O, Br⋯H/H⋯Br and N⋯H/H⋯N interactions.
of the title compound, CKeywords: crystal structure; tetrahydropyridine; hydrogen bonds; dimers; C—Br⋯π contacts; Hirshfeld surface analysis.
CCDC reference: 2149629
1. Chemical context
Nitrogen-based heterocycles are an important class of organic molecules that are used extensively in different branches of chemistry (Yadigarov et al., 2009; Abdelhamid et al., 2011; Magerramov et al., 2018; Yin et al., 2020; Khalilov et al., 2021). In particular, the synthesis of heterocyclic systems comprising a bioactive pyridine core with a broad spectrum of biological activities is noteworthy (Mamedov et al., 2020; Wojcicka & Redzicka, 2021). On the other hand, the pyridine ring is an essential part of diverse natural products, such as nicotinic acid, nicotinamide, vitamin B3 and diverse (Aida et al., 2009). In the framework of our ongoing structural studies (Safarova et al., 2019; Naghiyev et al., 2020, 2021a,b; Maharramov et al., 2021), we report here the and Hirshfeld surface analysis of the title compound, 5-acetyl-2-amino-4-(4-bromophenyl)-6-oxo-1-phenyl-1,4,5,6-tetrahydropyridine-3-carbonitrile.
2. Structural commentary
The title compound crystallizes in the monoclinic Pc with Z = 4, and with two molecules, A and B, in the (Fig. 1). These molecules are stereoisimers with an R,R absolute configurations at C3 and C4 in molecule A, whereas the corresponding atoms in B, C23 and C24, have an S configuration. In both molecules, the conformation of the central dihydropyridine ring is close to screw-boat [the puckering parameters (Cremer & Pople, 1975) are θ = 63.9 (11)°, φ = 148.9 (12)° in A and θ = 115.1 (11)°, φ = 339.4 (12)° in B]. In molecule A, the phenyl (C7–C12) and bromophenyl (C14–C19) rings form dihedral angles of 64.0 (4) and 86.3 (4)°, respectively, with the mean plane of the central dihydropyridine ring. In molecule B, the corresponding dihedral angles are 77.2 (4) and 83.9 (4)°. The acetyl groups in both molecules are almost planar [largest deviations of 0.005 (8) and 0.035 (8) Å for atoms C1 (A) and C23 (B), respectively] and they make the dihedral angles of 89.5 (5) and 87.7 (5)° with the mean planes of the dihydropyridine rings in these molecules.
3. Supramolecular features
Strong N6—H6B⋯O21 and N26—H26A⋯O1 hydrogen bonds (Fig. 1, Table 1) link molecules A and B into dimers with an (16) ring motif (Bernstein et al., 1995). These dimers are additionally stabilized by C=O⋯π interactions [O21⋯Cg2 = 3.620 (8) Å, C21=O21⋯Cg2 = 110.8 (6)°, O1⋯Cg5 = 3.748 (8) Å, C1=O1⋯Cg5 = 125.1 (6)°, where Cg2 and Cg5 are the centroids of the C7–C12 phenyl ring in molecule A and the C27–C32 phenyl ring in molecule B, respectively]. The dimers are connected by N—H⋯O and N—H⋯N hydrogen bonds with an R33(14) ring motif into chains along the c-axis direction (Table 1; Figs. 2, 3, 4 and 5). C—Br⋯π interactions are also observed [Br1⋯Cg6v = 3.407 (4) Å, C17—Br1⋯Cg6v = 145.2 (3)°; symmetry code (v) −1 + x, 1 − y, − + z; Cg6 is the centroid of the C34–C39 ring]. Together with the other intermolecular contacts given in Table 2, these interactions contribute to the stabilization of the molecular packing, forming a three-dimensional network (Figs. 6 and 7).
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4. Hirshfeld surface analysis
To visualize the intermolecular interactions for both independent molecules A and B, CrystalExplorer17 (Turner et al., 2017) was used to generate Hirshfeld surfaces and corresponding two-dimensional fingerprint plots. The dnorm mappings were performed in the range of −0.6596 to 1.4042 arbitrary units for molecule A and −0.5436 to 1.4926 arbitrary units for molecule B. Bright red circles on the dnorm surfaces (Fig. 8a,b,c,d) indicate regions of N—H⋯O interactions. The N—H⋯N and C—H⋯N interactions (Tables 1 and 2) also cause red spots on the Hirshfeld surfaces.
The fingerprint plots (Fig. 9) reveal that while the H⋯H interactions make the greatest contributions (Table 3), as would be expected for a molecule with such a predominance of H atoms, C⋯H/H⋯C, O⋯H/H⋯O, Br⋯H/H⋯Br and N⋯H/H⋯N contacts are also substantial. Table 3 gives the contributions of the other, less significant contacts. The fact that the same type of interactions provide different contributions to the Hirshfeld surface for molecules A and B can be attributed to the different environments of these molecules in the crystalline state.
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5. Database survey
A search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016) for the tetrahydropyridine unit gave 1340 hits, and some of which, namely OZAKOS (Naghiyev et al., 2021c), JEBREQ (Mohana et al., 2017), JEBRAM (Mohana et al., 2017), SETWUK (Suresh et al., 2007) and SETWOE (Suresh et al., 2007) closely resemble the title compound.
In OZAKOS (space group: Pc), the molecular conformation of the title compound is stabilized by an intramolecular O—H⋯O hydrogen bond, forming an S(6) ring motif. In the crystal, molecules are linked by intermolecular N—H⋯N and C—H⋯N hydrogen bonds, and N—H⋯π and C—H⋯π interactions, forming a three-dimensional network.
In both the related salts, JEBREQ (space group: P) and JEBRAM (space group: P), the N atom in the 1-position of the pyrimidine ring is protonated. In the hydrated salt JEBREQ, the presence of the water molecule prevents the formation of the familiar (8) ring motif. Instead, an expanded ring [i.e. R32(8)] is formed involving the sulfonate group, the pyrimidinium cation and the water molecule. Both salts form a supramolecular homosynthon [(8) ring motif] through N—H⋯N hydrogen bonds. The molecular structures are further stabilized by π–π stacking, and C=O⋯π, C—H⋯O and C—H⋯Cl interactions. It appears that the protonation state of the pyrimidine ring influences the intermolecular interactions within the to a substantial extent. In JEBRAM, the protonated N atom and the amino group of the pyrimidinium cation interact with the carboxylate group of the anion through N—H⋯O hydrogen bonds, forming a heterosynthon with an (8) ring motif.
The polysubstituted pyridines, SETWUK (space group: P21/n) and SETWOE (space group: P21/c), adopt nearly planar structures. The of SETWUK is stabilized by intermolecular C—H⋯F and C—H⋯π interactions. The C—H⋯F bond generates a linear chain with a C(14) motif. The of SETWOE is stabilized by intermolecular C—H⋯O and C—H⋯π interactions. The C—H⋯O hydrogen bonds generate rings with R22(14) and R22(20) motifs. In addition, in SETWOE and SETWUK, intramolecular O—H⋯O interactions are found, which generate an S(6) graph-set motif. No significant aryl–aryl or π–π interactions exist in these structures. All this bears some resemblance to the title compound.
6. Synthesis and crystallization
To a solution of 2-(4-bromobenzylidene)malononitrile (1.19 g; 5.1 mmol) and acetoacetanilide (0.92 g; 5.2 mmol) in methanol (25 mL), piperidine (2–3 drops) was added and the mixture was stirred at room temperature for 48 h. Then 15 mL of methanol were removed by rotary evaporation from the reaction mixture, which was left overnight. The precipitated crystals were separated by filtration and recrystallized from ethanol/water (1:1) solution (yield 66%; m.p. 536–537 K).
1H NMR (300 MHz, DMSO-d6, m.h.): 2.29 (s, 3H, CH3—C=O); 4.15 (d, 1H, CH-Ar); 4.34 (d, 1H, CH—C=O); 5.98 (s, 2H, NH2); 7.12–7.35 (m, 5H, 5CHar); 7.40 (d, 2H, 2CHar); 7.61 (d, 2H, 2CHar).
13C NMR (75 MHz, DMSO-d6, m.h.): 27.86 (CH3—C=O), 37.94 (CH—Ar), 57.24 (=Cquat), 62.41 (CH—C=O), 117.21 (CN), 121.25 (Br-Car), 127.67 (CHar), 128.19 (2CHar), 129.58 (2CHar), 130.15 (2CHar), 130.74 (2CHar), 136.98 (Car), 140.37 (Car), 154.14 (=Cquat), 166.20 (N—C=O), 202.55 (C=O).
7. details
Crystal data, data collection and structure . All H atoms were positioned geometrically (N—H = 0.90 Å, C—H = 0.95–1.00 Å) and refined as riding with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(C-methyl).
details are summarized in Table 4
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Supporting information
CCDC reference: 2149629
https://doi.org/10.1107/S2056989022001232/yk2165sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989022001232/yk2165Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989022001232/yk2165Isup3.cml
Data collection: CrysAlis PRO (Rigaku OD, 2021); cell
CrysAlis PRO (Rigaku OD, 2021); data reduction: CrysAlis PRO (Rigaku OD, 2021); program(s) used to solve structure: SHELXT (Sheldrick, 2015a); program(s) used to refine structure: SHELXL (Sheldrick, 2015b); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2020).C20H16BrN3O2 | F(000) = 832 |
Mr = 410.26 | Dx = 1.533 Mg m−3 |
Monoclinic, Pc | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5889 (7) Å | Cell parameters from 3126 reflections |
b = 13.2144 (10) Å | θ = 2.7–24.0° |
c = 14.4529 (10) Å | µ = 2.33 mm−1 |
β = 103.9395 (18)° | T = 100 K |
V = 1777.4 (2) Å3 | Prism, colourless |
Z = 4 | 0.05 × 0.04 × 0.03 mm |
Bruker D8 QUEST PHOTON-III CCD diffractometer | 5403 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.099 |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 30.5°, θmin = 2.1° |
Tmin = 0.818, Tmax = 0.926 | h = −13→13 |
34410 measured reflections | k = −18→18 |
10756 independent reflections | l = −20→20 |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.065 | w = 1/[σ2(Fo2) + (0.0401P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.132 | (Δ/σ)max < 0.001 |
S = 0.98 | Δρmax = 0.50 e Å−3 |
10756 reflections | Δρmin = −0.66 e Å−3 |
471 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
2 restraints | Extinction coefficient: 0.0039 (3) |
Primary atom site location: difference Fourier map | Absolute structure: Refined as an inversion twin |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.473 (14) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a two-component inversion twin. |
x | y | z | Uiso*/Ueq | ||
Br1 | −0.05184 (9) | 0.02892 (6) | 0.27044 (7) | 0.0328 (2) | |
N1 | 0.3304 (7) | 0.5094 (5) | 0.4197 (5) | 0.0194 (15) | |
C1 | 0.6385 (9) | 0.4260 (6) | 0.3992 (6) | 0.0216 (19) | |
O1 | 0.6581 (7) | 0.5145 (5) | 0.4155 (5) | 0.0456 (19) | |
C2 | 0.3768 (9) | 0.4655 (6) | 0.3455 (6) | 0.0219 (18) | |
O2 | 0.3284 (7) | 0.4954 (4) | 0.2642 (4) | 0.0273 (14) | |
C3 | 0.4864 (9) | 0.3816 (6) | 0.3708 (6) | 0.0211 (18) | |
H3 | 0.4792 | 0.3389 | 0.3127 | 0.025* | |
C4 | 0.4547 (9) | 0.3140 (6) | 0.4498 (6) | 0.0221 (19) | |
H4 | 0.5405 | 0.2699 | 0.4736 | 0.026* | |
C5 | 0.4402 (9) | 0.3820 (6) | 0.5310 (6) | 0.0229 (19) | |
C6 | 0.3781 (9) | 0.4741 (6) | 0.5141 (6) | 0.0213 (18) | |
N6 | 0.3596 (7) | 0.5398 (5) | 0.5816 (5) | 0.0219 (15) | |
H6A | 0.3529 | 0.5257 | 0.6413 | 0.026* | |
H6B | 0.3534 | 0.6055 | 0.5646 | 0.026* | |
C7 | 0.2213 (9) | 0.5898 (6) | 0.3983 (6) | 0.0212 (18) | |
C8 | 0.2595 (10) | 0.6844 (7) | 0.3737 (7) | 0.031 (2) | |
H8 | 0.3538 | 0.6970 | 0.3663 | 0.037* | |
C9 | 0.1581 (10) | 0.7610 (7) | 0.3600 (7) | 0.036 (2) | |
H9 | 0.1814 | 0.8267 | 0.3416 | 0.044* | |
C10 | 0.0223 (11) | 0.7409 (8) | 0.3732 (7) | 0.036 (2) | |
H10 | −0.0463 | 0.7940 | 0.3661 | 0.044* | |
C11 | −0.0144 (11) | 0.6464 (7) | 0.3963 (6) | 0.035 (2) | |
H11 | −0.1089 | 0.6334 | 0.4031 | 0.042* | |
C12 | 0.0861 (10) | 0.5691 (7) | 0.4099 (6) | 0.030 (2) | |
H12 | 0.0620 | 0.5030 | 0.4269 | 0.036* | |
C13 | 0.7611 (10) | 0.3551 (6) | 0.4072 (7) | 0.034 (2) | |
H13A | 0.7314 | 0.2868 | 0.4207 | 0.050* | |
H13B | 0.8413 | 0.3770 | 0.4591 | 0.050* | |
H13C | 0.7915 | 0.3546 | 0.3472 | 0.050* | |
C14 | 0.3267 (9) | 0.2446 (6) | 0.4069 (6) | 0.0213 (17) | |
C15 | 0.1891 (10) | 0.2670 (6) | 0.4115 (7) | 0.029 (2) | |
H15 | 0.1720 | 0.3262 | 0.4445 | 0.034* | |
C16 | 0.0740 (10) | 0.2057 (6) | 0.3695 (6) | 0.029 (2) | |
H16 | −0.0213 | 0.2229 | 0.3717 | 0.034* | |
C17 | 0.1025 (10) | 0.1185 (6) | 0.3240 (6) | 0.026 (2) | |
C18 | 0.2390 (10) | 0.0940 (6) | 0.3159 (7) | 0.029 (2) | |
H18 | 0.2561 | 0.0350 | 0.2828 | 0.035* | |
C19 | 0.3494 (10) | 0.1581 (6) | 0.3576 (6) | 0.026 (2) | |
H19 | 0.4441 | 0.1428 | 0.3525 | 0.031* | |
C20 | 0.4925 (10) | 0.3499 (6) | 0.6274 (7) | 0.024 (2) | |
N20 | 0.5390 (9) | 0.3255 (6) | 0.7052 (5) | 0.0335 (19) | |
Br2 | 1.05193 (11) | 1.25495 (8) | 0.62011 (8) | 0.0409 (3) | |
N2 | 0.6616 (7) | 0.7734 (5) | 0.5811 (5) | 0.0220 (16) | |
C21 | 0.3521 (10) | 0.8636 (7) | 0.5959 (6) | 0.028 (2) | |
O21 | 0.3329 (8) | 0.7728 (5) | 0.6051 (5) | 0.0403 (18) | |
C22 | 0.6085 (10) | 0.8245 (6) | 0.6505 (6) | 0.027 (2) | |
O22 | 0.6450 (7) | 0.8015 (4) | 0.7343 (4) | 0.0305 (15) | |
C23 | 0.5025 (9) | 0.9077 (6) | 0.6148 (6) | 0.0238 (19) | |
H23 | 0.5119 | 0.9588 | 0.6670 | 0.029* | |
C24 | 0.5288 (9) | 0.9623 (6) | 0.5266 (6) | 0.0226 (19) | |
H24 | 0.4424 | 1.0048 | 0.4993 | 0.027* | |
C25 | 0.5389 (9) | 0.8820 (6) | 0.4542 (6) | 0.0230 (19) | |
C26 | 0.6117 (9) | 0.7941 (6) | 0.4838 (6) | 0.0210 (18) | |
N26 | 0.6426 (8) | 0.7245 (5) | 0.4234 (5) | 0.0279 (17) | |
H26A | 0.6602 | 0.6614 | 0.4466 | 0.034* | |
H26B | 0.6454 | 0.7409 | 0.3634 | 0.034* | |
C27 | 0.7687 (10) | 0.6958 (6) | 0.6136 (6) | 0.0234 (19) | |
C28 | 0.7276 (10) | 0.6009 (6) | 0.6383 (7) | 0.030 (2) | |
H28 | 0.6293 | 0.5858 | 0.6336 | 0.036* | |
C29 | 0.8324 (11) | 0.5287 (7) | 0.6698 (7) | 0.040 (3) | |
H29 | 0.8056 | 0.4632 | 0.6865 | 0.048* | |
C30 | 0.9761 (11) | 0.5507 (6) | 0.6776 (7) | 0.033 (2) | |
H30 | 1.0476 | 0.5007 | 0.6998 | 0.040* | |
C31 | 1.0139 (11) | 0.6444 (7) | 0.6530 (7) | 0.035 (2) | |
H31 | 1.1123 | 0.6590 | 0.6575 | 0.042* | |
C32 | 0.9120 (10) | 0.7187 (6) | 0.6216 (6) | 0.028 (2) | |
H32 | 0.9398 | 0.7842 | 0.6059 | 0.034* | |
C33 | 0.2270 (11) | 0.9361 (7) | 0.5651 (8) | 0.041 (3) | |
H33A | 0.2541 | 1.0027 | 0.5936 | 0.061* | |
H33B | 0.1440 | 0.9103 | 0.5862 | 0.061* | |
H33C | 0.2021 | 0.9422 | 0.4955 | 0.061* | |
C34 | 0.6606 (8) | 1.0327 (6) | 0.5511 (6) | 0.0188 (17) | |
C35 | 0.7743 (10) | 1.0222 (7) | 0.5076 (6) | 0.028 (2) | |
H35 | 0.7720 | 0.9690 | 0.4630 | 0.034* | |
C36 | 0.8913 (10) | 1.0875 (7) | 0.5276 (7) | 0.029 (2) | |
H36 | 0.9687 | 1.0787 | 0.4980 | 0.035* | |
C37 | 0.8931 (10) | 1.1659 (6) | 0.5917 (6) | 0.026 (2) | |
C38 | 0.7802 (10) | 1.1788 (6) | 0.6350 (6) | 0.027 (2) | |
H38 | 0.7820 | 1.2325 | 0.6789 | 0.033* | |
C39 | 0.6654 (10) | 1.1133 (6) | 0.6139 (6) | 0.025 (2) | |
H39 | 0.5874 | 1.1232 | 0.6429 | 0.030* | |
C40 | 0.4888 (10) | 0.8997 (6) | 0.3553 (7) | 0.025 (2) | |
N40 | 0.4482 (10) | 0.9142 (5) | 0.2749 (6) | 0.0307 (16) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0341 (5) | 0.0228 (4) | 0.0388 (5) | −0.0033 (5) | 0.0036 (4) | −0.0037 (5) |
N1 | 0.027 (4) | 0.020 (3) | 0.012 (3) | 0.005 (3) | 0.007 (3) | 0.002 (3) |
C1 | 0.027 (5) | 0.016 (4) | 0.025 (5) | 0.002 (4) | 0.013 (4) | −0.003 (3) |
O1 | 0.030 (4) | 0.026 (4) | 0.081 (5) | −0.002 (3) | 0.013 (4) | −0.012 (4) |
C2 | 0.025 (5) | 0.017 (4) | 0.026 (5) | −0.001 (4) | 0.013 (4) | −0.005 (4) |
O2 | 0.035 (4) | 0.025 (3) | 0.021 (3) | −0.001 (3) | 0.006 (3) | 0.004 (3) |
C3 | 0.028 (5) | 0.018 (4) | 0.018 (4) | 0.001 (4) | 0.006 (4) | −0.005 (3) |
C4 | 0.031 (5) | 0.019 (4) | 0.015 (4) | −0.002 (4) | 0.004 (4) | 0.001 (3) |
C5 | 0.031 (5) | 0.021 (4) | 0.018 (4) | −0.001 (4) | 0.008 (4) | 0.001 (3) |
C6 | 0.026 (5) | 0.020 (4) | 0.020 (4) | −0.004 (4) | 0.010 (4) | −0.006 (4) |
N6 | 0.031 (4) | 0.021 (4) | 0.015 (4) | −0.003 (3) | 0.008 (3) | −0.001 (3) |
C7 | 0.024 (5) | 0.020 (4) | 0.019 (4) | 0.004 (3) | 0.003 (4) | 0.000 (3) |
C8 | 0.027 (5) | 0.023 (4) | 0.043 (6) | −0.001 (4) | 0.010 (5) | 0.002 (4) |
C9 | 0.039 (6) | 0.031 (5) | 0.035 (6) | 0.012 (5) | 0.000 (5) | 0.003 (4) |
C10 | 0.036 (6) | 0.042 (6) | 0.030 (6) | 0.014 (5) | 0.006 (5) | −0.005 (5) |
C11 | 0.039 (6) | 0.033 (5) | 0.037 (6) | 0.010 (5) | 0.017 (5) | 0.000 (4) |
C12 | 0.026 (5) | 0.030 (5) | 0.033 (5) | 0.002 (4) | 0.008 (4) | 0.005 (4) |
C13 | 0.029 (5) | 0.028 (5) | 0.044 (6) | −0.001 (4) | 0.010 (5) | −0.002 (4) |
C14 | 0.024 (5) | 0.019 (4) | 0.021 (4) | 0.000 (4) | 0.006 (4) | 0.002 (4) |
C15 | 0.041 (6) | 0.015 (4) | 0.032 (5) | −0.002 (4) | 0.012 (5) | 0.000 (4) |
C16 | 0.031 (5) | 0.018 (4) | 0.040 (6) | −0.003 (4) | 0.014 (5) | −0.006 (4) |
C17 | 0.027 (5) | 0.025 (5) | 0.023 (5) | −0.008 (4) | 0.001 (4) | 0.002 (4) |
C18 | 0.031 (5) | 0.020 (4) | 0.037 (6) | 0.002 (4) | 0.008 (5) | −0.003 (4) |
C19 | 0.022 (5) | 0.030 (5) | 0.029 (5) | −0.001 (4) | 0.010 (4) | −0.007 (4) |
C20 | 0.032 (5) | 0.015 (4) | 0.024 (5) | 0.002 (4) | 0.006 (4) | −0.001 (4) |
N20 | 0.045 (5) | 0.031 (4) | 0.025 (5) | 0.011 (4) | 0.009 (4) | 0.001 (3) |
Br2 | 0.0417 (6) | 0.0460 (6) | 0.0350 (5) | −0.0143 (5) | 0.0092 (4) | −0.0033 (5) |
N2 | 0.020 (4) | 0.017 (4) | 0.026 (4) | 0.006 (3) | 0.000 (3) | 0.002 (3) |
C21 | 0.035 (6) | 0.027 (5) | 0.023 (5) | 0.004 (4) | 0.008 (4) | 0.000 (4) |
O21 | 0.051 (5) | 0.026 (4) | 0.048 (5) | −0.004 (3) | 0.021 (4) | 0.000 (3) |
C22 | 0.038 (6) | 0.016 (4) | 0.025 (5) | −0.003 (4) | 0.005 (4) | 0.001 (4) |
O22 | 0.044 (4) | 0.025 (3) | 0.023 (3) | 0.003 (3) | 0.008 (3) | 0.003 (3) |
C23 | 0.027 (5) | 0.018 (4) | 0.029 (5) | 0.002 (4) | 0.012 (4) | −0.003 (4) |
C24 | 0.029 (5) | 0.013 (4) | 0.025 (5) | 0.003 (4) | 0.007 (4) | −0.001 (3) |
C25 | 0.031 (5) | 0.021 (4) | 0.019 (4) | 0.004 (4) | 0.010 (4) | 0.001 (4) |
C26 | 0.028 (5) | 0.013 (4) | 0.023 (5) | 0.001 (3) | 0.007 (4) | −0.004 (3) |
N26 | 0.034 (4) | 0.022 (4) | 0.030 (4) | 0.006 (3) | 0.011 (4) | 0.000 (3) |
C27 | 0.031 (5) | 0.018 (4) | 0.022 (5) | 0.008 (4) | 0.007 (4) | −0.001 (3) |
C28 | 0.026 (5) | 0.019 (4) | 0.040 (6) | −0.002 (4) | 0.003 (4) | 0.006 (4) |
C29 | 0.041 (6) | 0.023 (5) | 0.050 (6) | 0.004 (5) | −0.001 (5) | 0.012 (5) |
C30 | 0.039 (6) | 0.023 (5) | 0.038 (6) | 0.011 (4) | 0.009 (5) | −0.001 (4) |
C31 | 0.033 (6) | 0.038 (6) | 0.034 (6) | 0.005 (4) | 0.005 (5) | −0.003 (4) |
C32 | 0.035 (5) | 0.022 (4) | 0.028 (5) | 0.006 (4) | 0.009 (4) | 0.002 (4) |
C33 | 0.039 (6) | 0.035 (5) | 0.050 (7) | 0.006 (5) | 0.015 (5) | 0.004 (5) |
C34 | 0.017 (4) | 0.018 (4) | 0.020 (4) | 0.003 (3) | 0.003 (3) | 0.005 (3) |
C35 | 0.037 (6) | 0.022 (5) | 0.025 (5) | 0.003 (4) | 0.009 (4) | 0.001 (4) |
C36 | 0.028 (5) | 0.031 (5) | 0.030 (5) | 0.003 (4) | 0.010 (4) | 0.001 (4) |
C37 | 0.031 (5) | 0.020 (4) | 0.026 (5) | −0.004 (4) | 0.003 (4) | 0.003 (4) |
C38 | 0.039 (6) | 0.024 (4) | 0.018 (5) | 0.000 (4) | 0.005 (4) | 0.000 (4) |
C39 | 0.031 (5) | 0.017 (4) | 0.025 (5) | 0.004 (4) | 0.004 (4) | 0.002 (4) |
C40 | 0.036 (5) | 0.013 (4) | 0.028 (5) | 0.008 (4) | 0.012 (4) | 0.000 (4) |
N40 | 0.039 (4) | 0.027 (4) | 0.030 (4) | 0.010 (4) | 0.014 (3) | 0.008 (4) |
Br1—C17 | 1.908 (9) | Br2—C37 | 1.890 (9) |
N1—C2 | 1.383 (10) | N2—C26 | 1.400 (10) |
N1—C6 | 1.410 (10) | N2—C22 | 1.403 (11) |
N1—C7 | 1.470 (10) | N2—C27 | 1.447 (10) |
C1—O1 | 1.199 (9) | C21—O21 | 1.226 (10) |
C1—C13 | 1.486 (12) | C21—C33 | 1.516 (12) |
C1—C3 | 1.533 (12) | C21—C23 | 1.517 (12) |
C2—O2 | 1.220 (10) | C22—O22 | 1.215 (10) |
C2—C3 | 1.511 (11) | C22—C23 | 1.501 (11) |
C3—C4 | 1.537 (11) | C23—C24 | 1.538 (11) |
C3—H3 | 1.0000 | C23—H23 | 1.0000 |
C4—C5 | 1.510 (11) | C24—C25 | 1.509 (11) |
C4—C14 | 1.538 (11) | C24—C34 | 1.541 (11) |
C4—H4 | 1.0000 | C24—H24 | 1.0000 |
C5—C6 | 1.351 (11) | C25—C26 | 1.369 (11) |
C5—C20 | 1.428 (12) | C25—C40 | 1.414 (12) |
C6—N6 | 1.349 (10) | C26—N26 | 1.350 (10) |
N6—H6A | 0.8999 | N26—H26A | 0.8993 |
N6—H6B | 0.9000 | N26—H26B | 0.9000 |
C7—C8 | 1.374 (11) | C27—C32 | 1.384 (12) |
C7—C12 | 1.374 (12) | C27—C28 | 1.387 (11) |
C8—C9 | 1.385 (12) | C28—C29 | 1.380 (12) |
C8—H8 | 0.9500 | C28—H28 | 0.9500 |
C9—C10 | 1.387 (13) | C29—C30 | 1.386 (14) |
C9—H9 | 0.9500 | C29—H29 | 0.9500 |
C10—C11 | 1.361 (13) | C30—C31 | 1.362 (12) |
C10—H10 | 0.9500 | C30—H30 | 0.9500 |
C11—C12 | 1.386 (12) | C31—C32 | 1.382 (12) |
C11—H11 | 0.9500 | C31—H31 | 0.9500 |
C12—H12 | 0.9500 | C32—H32 | 0.9500 |
C13—H13A | 0.9800 | C33—H33A | 0.9800 |
C13—H13B | 0.9800 | C33—H33B | 0.9800 |
C13—H13C | 0.9800 | C33—H33C | 0.9800 |
C14—C15 | 1.370 (12) | C34—C35 | 1.391 (11) |
C14—C19 | 1.391 (11) | C34—C39 | 1.392 (11) |
C15—C16 | 1.386 (12) | C35—C36 | 1.389 (13) |
C15—H15 | 0.9500 | C35—H35 | 0.9500 |
C16—C17 | 1.386 (12) | C36—C37 | 1.386 (12) |
C16—H16 | 0.9500 | C36—H36 | 0.9500 |
C17—C18 | 1.380 (12) | C37—C38 | 1.385 (12) |
C18—C19 | 1.376 (12) | C38—C39 | 1.375 (12) |
C18—H18 | 0.9500 | C38—H38 | 0.9500 |
C19—H19 | 0.9500 | C39—H39 | 0.9500 |
C20—N20 | 1.151 (11) | C40—N40 | 1.149 (11) |
C2—N1—C6 | 121.4 (7) | C26—N2—C22 | 121.9 (7) |
C2—N1—C7 | 119.0 (7) | C26—N2—C27 | 120.6 (7) |
C6—N1—C7 | 119.4 (7) | C22—N2—C27 | 117.5 (7) |
O1—C1—C13 | 121.1 (8) | O21—C21—C33 | 121.4 (9) |
O1—C1—C3 | 121.3 (8) | O21—C21—C23 | 121.1 (8) |
C13—C1—C3 | 117.6 (7) | C33—C21—C23 | 117.4 (8) |
O2—C2—N1 | 119.5 (7) | O22—C22—N2 | 121.6 (8) |
O2—C2—C3 | 123.4 (7) | O22—C22—C23 | 122.3 (8) |
N1—C2—C3 | 117.1 (7) | N2—C22—C23 | 116.1 (7) |
C2—C3—C1 | 110.2 (6) | C22—C23—C21 | 108.4 (7) |
C2—C3—C4 | 110.8 (7) | C22—C23—C24 | 113.3 (7) |
C1—C3—C4 | 111.6 (7) | C21—C23—C24 | 111.6 (7) |
C2—C3—H3 | 108.0 | C22—C23—H23 | 107.8 |
C1—C3—H3 | 108.0 | C21—C23—H23 | 107.8 |
C4—C3—H3 | 108.0 | C24—C23—H23 | 107.8 |
C5—C4—C3 | 107.7 (6) | C25—C24—C23 | 107.2 (6) |
C5—C4—C14 | 117.0 (7) | C25—C24—C34 | 113.4 (7) |
C3—C4—C14 | 109.2 (7) | C23—C24—C34 | 112.5 (7) |
C5—C4—H4 | 107.5 | C25—C24—H24 | 107.8 |
C3—C4—H4 | 107.5 | C23—C24—H24 | 107.8 |
C14—C4—H4 | 107.5 | C34—C24—H24 | 107.8 |
C6—C5—C20 | 118.7 (8) | C26—C25—C40 | 118.6 (8) |
C6—C5—C4 | 120.9 (8) | C26—C25—C24 | 119.5 (7) |
C20—C5—C4 | 120.4 (7) | C40—C25—C24 | 121.5 (7) |
N6—C6—C5 | 125.3 (8) | N26—C26—C25 | 123.4 (8) |
N6—C6—N1 | 114.7 (7) | N26—C26—N2 | 116.2 (7) |
C5—C6—N1 | 119.9 (7) | C25—C26—N2 | 120.3 (7) |
C6—N6—H6A | 127.7 | C26—N26—H26A | 116.2 |
C6—N6—H6B | 115.8 | C26—N26—H26B | 121.5 |
H6A—N6—H6B | 116.5 | H26A—N26—H26B | 122.3 |
C8—C7—C12 | 122.1 (8) | C32—C27—C28 | 120.9 (8) |
C8—C7—N1 | 119.4 (8) | C32—C27—N2 | 119.0 (8) |
C12—C7—N1 | 118.4 (7) | C28—C27—N2 | 120.0 (8) |
C7—C8—C9 | 118.7 (9) | C29—C28—C27 | 118.7 (9) |
C7—C8—H8 | 120.6 | C29—C28—H28 | 120.6 |
C9—C8—H8 | 120.6 | C27—C28—H28 | 120.6 |
C8—C9—C10 | 119.4 (9) | C28—C29—C30 | 120.8 (9) |
C8—C9—H9 | 120.3 | C28—C29—H29 | 119.6 |
C10—C9—H9 | 120.3 | C30—C29—H29 | 119.6 |
C11—C10—C9 | 121.1 (9) | C31—C30—C29 | 119.4 (9) |
C11—C10—H10 | 119.5 | C31—C30—H30 | 120.3 |
C9—C10—H10 | 119.5 | C29—C30—H30 | 120.3 |
C10—C11—C12 | 120.0 (10) | C30—C31—C32 | 121.3 (9) |
C10—C11—H11 | 120.0 | C30—C31—H31 | 119.3 |
C12—C11—H11 | 120.0 | C32—C31—H31 | 119.3 |
C7—C12—C11 | 118.7 (9) | C31—C32—C27 | 118.8 (8) |
C7—C12—H12 | 120.7 | C31—C32—H32 | 120.6 |
C11—C12—H12 | 120.7 | C27—C32—H32 | 120.6 |
C1—C13—H13A | 109.5 | C21—C33—H33A | 109.5 |
C1—C13—H13B | 109.5 | C21—C33—H33B | 109.5 |
H13A—C13—H13B | 109.5 | H33A—C33—H33B | 109.5 |
C1—C13—H13C | 109.5 | C21—C33—H33C | 109.5 |
H13A—C13—H13C | 109.5 | H33A—C33—H33C | 109.5 |
H13B—C13—H13C | 109.5 | H33B—C33—H33C | 109.5 |
C15—C14—C19 | 118.3 (8) | C35—C34—C39 | 117.7 (8) |
C15—C14—C4 | 122.4 (7) | C35—C34—C24 | 121.7 (7) |
C19—C14—C4 | 119.3 (7) | C39—C34—C24 | 120.5 (7) |
C14—C15—C16 | 121.8 (8) | C36—C35—C34 | 121.7 (8) |
C14—C15—H15 | 119.1 | C36—C35—H35 | 119.2 |
C16—C15—H15 | 119.1 | C34—C35—H35 | 119.2 |
C15—C16—C17 | 117.8 (9) | C37—C36—C35 | 118.8 (9) |
C15—C16—H16 | 121.1 | C37—C36—H36 | 120.6 |
C17—C16—H16 | 121.1 | C35—C36—H36 | 120.6 |
C18—C17—C16 | 122.3 (8) | C38—C37—C36 | 120.6 (9) |
C18—C17—Br1 | 118.6 (7) | C38—C37—Br2 | 120.1 (7) |
C16—C17—Br1 | 119.1 (7) | C36—C37—Br2 | 119.3 (7) |
C19—C18—C17 | 117.6 (8) | C39—C38—C37 | 119.5 (8) |
C19—C18—H18 | 121.2 | C39—C38—H38 | 120.2 |
C17—C18—H18 | 121.2 | C37—C38—H38 | 120.2 |
C18—C19—C14 | 122.1 (8) | C38—C39—C34 | 121.7 (8) |
C18—C19—H19 | 119.0 | C38—C39—H39 | 119.2 |
C14—C19—H19 | 119.0 | C34—C39—H39 | 119.2 |
N20—C20—C5 | 177.7 (10) | N40—C40—C25 | 180.0 (14) |
C6—N1—C2—O2 | 176.9 (8) | C26—N2—C22—O22 | 175.0 (8) |
C7—N1—C2—O2 | 1.3 (11) | C27—N2—C22—O22 | −3.7 (12) |
C6—N1—C2—C3 | −3.0 (11) | C26—N2—C22—C23 | −4.0 (11) |
C7—N1—C2—C3 | −178.6 (7) | C27—N2—C22—C23 | 177.3 (7) |
O2—C2—C3—C1 | 94.4 (10) | O22—C22—C23—C21 | −86.3 (10) |
N1—C2—C3—C1 | −85.7 (9) | N2—C22—C23—C21 | 92.7 (9) |
O2—C2—C3—C4 | −141.5 (8) | O22—C22—C23—C24 | 149.1 (8) |
N1—C2—C3—C4 | 38.4 (10) | N2—C22—C23—C24 | −31.9 (10) |
O1—C1—C3—C2 | 13.1 (12) | O21—C21—C23—C22 | −3.8 (12) |
C13—C1—C3—C2 | −167.8 (7) | C33—C21—C23—C22 | 176.2 (8) |
O1—C1—C3—C4 | −110.6 (10) | O21—C21—C23—C24 | 121.7 (9) |
C13—C1—C3—C4 | 68.5 (10) | C33—C21—C23—C24 | −58.3 (10) |
C2—C3—C4—C5 | −52.2 (9) | C22—C23—C24—C25 | 51.6 (9) |
C1—C3—C4—C5 | 71.1 (9) | C21—C23—C24—C25 | −71.1 (8) |
C2—C3—C4—C14 | 75.8 (8) | C22—C23—C24—C34 | −73.7 (9) |
C1—C3—C4—C14 | −160.9 (7) | C21—C23—C24—C34 | 163.5 (7) |
C3—C4—C5—C6 | 36.6 (11) | C23—C24—C25—C26 | −40.8 (10) |
C14—C4—C5—C6 | −86.8 (10) | C34—C24—C25—C26 | 83.9 (9) |
C3—C4—C5—C20 | −143.3 (8) | C23—C24—C25—C40 | 146.4 (8) |
C14—C4—C5—C20 | 93.4 (10) | C34—C24—C25—C40 | −88.9 (10) |
C20—C5—C6—N6 | −0.5 (14) | C40—C25—C26—N26 | 2.2 (13) |
C4—C5—C6—N6 | 179.6 (8) | C24—C25—C26—N26 | −170.8 (8) |
C20—C5—C6—N1 | 177.6 (8) | C40—C25—C26—N2 | −179.3 (8) |
C4—C5—C6—N1 | −2.3 (13) | C24—C25—C26—N2 | 7.7 (12) |
C2—N1—C6—N6 | 161.5 (7) | C22—N2—C26—N26 | −163.9 (7) |
C7—N1—C6—N6 | −22.9 (10) | C27—N2—C26—N26 | 14.7 (11) |
C2—N1—C6—C5 | −16.8 (12) | C22—N2—C26—C25 | 17.5 (12) |
C7—N1—C6—C5 | 158.8 (8) | C27—N2—C26—C25 | −163.9 (8) |
C2—N1—C7—C8 | −73.8 (10) | C26—N2—C27—C32 | 81.3 (10) |
C6—N1—C7—C8 | 110.5 (9) | C22—N2—C27—C32 | −100.0 (9) |
C2—N1—C7—C12 | 110.5 (9) | C26—N2—C27—C28 | −100.2 (10) |
C6—N1—C7—C12 | −65.2 (10) | C22—N2—C27—C28 | 78.4 (10) |
C12—C7—C8—C9 | −0.2 (14) | C32—C27—C28—C29 | −1.0 (14) |
N1—C7—C8—C9 | −175.7 (8) | N2—C27—C28—C29 | −179.4 (8) |
C7—C8—C9—C10 | 1.3 (14) | C27—C28—C29—C30 | 0.6 (15) |
C8—C9—C10—C11 | −2.2 (15) | C28—C29—C30—C31 | −0.5 (16) |
C9—C10—C11—C12 | 2.0 (15) | C29—C30—C31—C32 | 0.8 (15) |
C8—C7—C12—C11 | 0.0 (14) | C30—C31—C32—C27 | −1.2 (14) |
N1—C7—C12—C11 | 175.6 (8) | C28—C27—C32—C31 | 1.3 (13) |
C10—C11—C12—C7 | −0.9 (14) | N2—C27—C32—C31 | 179.7 (8) |
C5—C4—C14—C15 | 25.4 (12) | C25—C24—C34—C35 | 1.3 (11) |
C3—C4—C14—C15 | −97.2 (9) | C23—C24—C34—C35 | 123.2 (8) |
C5—C4—C14—C19 | −157.7 (8) | C25—C24—C34—C39 | 177.4 (7) |
C3—C4—C14—C19 | 79.7 (9) | C23—C24—C34—C39 | −60.7 (10) |
C19—C14—C15—C16 | 0.6 (13) | C39—C34—C35—C36 | 1.9 (13) |
C4—C14—C15—C16 | 177.5 (8) | C24—C34—C35—C36 | 178.1 (8) |
C14—C15—C16—C17 | 1.6 (13) | C34—C35—C36—C37 | −0.9 (14) |
C15—C16—C17—C18 | −2.9 (14) | C35—C36—C37—C38 | 0.0 (13) |
C15—C16—C17—Br1 | 177.1 (7) | C35—C36—C37—Br2 | 179.7 (7) |
C16—C17—C18—C19 | 1.9 (14) | C36—C37—C38—C39 | −0.1 (13) |
Br1—C17—C18—C19 | −178.0 (7) | Br2—C37—C38—C39 | −179.8 (6) |
C17—C18—C19—C14 | 0.4 (14) | C37—C38—C39—C34 | 1.2 (13) |
C15—C14—C19—C18 | −1.6 (13) | C35—C34—C39—C38 | −2.0 (12) |
C4—C14—C19—C18 | −178.7 (8) | C24—C34—C39—C38 | −178.3 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···O2i | 0.90 | 1.87 | 2.766 (9) | 175 |
N6—H6B···O21 | 0.90 | 2.31 | 3.115 (9) | 149 |
C18—H18···N40ii | 0.95 | 2.46 | 3.256 (12) | 141 |
C23—H23···N40iii | 1.00 | 2.47 | 3.426 (11) | 161 |
N26—H26A···O1 | 0.90 | 1.99 | 2.784 (9) | 146 |
N26—H26B···N20iv | 0.90 | 2.43 | 3.139 (10) | 136 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) x, y−1, z; (iii) x, −y+2, z+1/2; (iv) x, −y+1, z−1/2. |
Contact | Distance | Symmetry operation |
O2···H30 | 2.63 | x - 1, -y + 1, z - 1/2 |
O1···H26A | 1.99 | x, y, z |
H13C···H16 | 2.46 | x + 1, y, z |
O2···H6A | 1.87 | x, -y + 1, z - 1/2 |
H18···N40 | 2.46 | x, y - 1, z |
N20···H26B | 2.43 | x, -y + 1, z + 1/2 |
C9···Br2 | 3.377 (10) | x - 1, -y + 2, z - 1/2 |
H13C···O22 | 2.79 | x, -y + 1, z - 1/2 |
C16···H36 | 2.86 | x - 1, y - 1, z |
H11···H26A | 2.47 | x - 1, y, z |
O21···H31 | 2.84 | x - 1, y, z |
H23···N40 | 2.47 | x, -y + 2, z + 1/2 |
H31···O21 | 2.84 | x + 1, y, z |
Contact | Contribution for A | Contribution for B |
H···H | 32.8 | 33.8 |
C···H/H···C | 19.6 | 18.9 |
O···H/H···O | 17.2 | 13.5 |
Br···H/H···Br | 10.6 | 11.3 |
N···H/H···N | 9.4 | 14.0 |
Br···C/C···Br | 4.8 | 4.6 |
N···O/O···N | 2.1 | – |
C···O/O···C | 1.4 | 1.3 |
Br···O/O···Br | 0.8 | 0.9 |
C···C | 0.7 | 0.7 |
N···N | 0.5 | 0.4 |
Br···N/N···Br | 0.1 | 0.6 |
Acknowledgements
Authors' contributions are as follows. Conceptualization and methodology, IGM; investigation, MA and APN; writing (original draft), MA and IGM; writing (review and editing of the manuscript), MA and ARA; visualization, MA and IGM; funding acquisition, VNK and IGM; resources, AAA, VNK and KNA; supervision, IGM and MA.
Funding information
This work was supported by the Baku State University, and RUDN University Strategic Academic Leadership Program.
References
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