research communications
and Hirshfeld surface analysis of [FeCl4(LH)2] (LH = 1H-imidazo[4,5-b]pyridin-4-ium)
aUnité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (URCHEMS), Département de Chimie, Université Mentouri de Constantine, 25000 Constantine, Algeria, bPharmaceutical Sciences Research Center CRSP, Constantine 25000, Algeria, cSynchrotron SOLEIL, L'Orme des Merisiers, BP48, Saint Aubin, 91192, Gif-sur-Yvette, France, and dLaboratoire de Cristallographie, Résonance Magnétique et Modélisation CRM2, UMR 7036, Institut Jean Barriol Faculté des Sciences et Technologies, BP 70239, 54506 Vandoeuvre lès Nancy, France
*Correspondence e-mail: [email protected]
The title coordination complex tetrachloridobis(1H-imidazo[4,5-b]pyridin-4-ium-κN3)iron(II), [FeCl4(C6H6N3)2] or [FeCl4(LH)2], was synthesized and structurally characterized by single-crystal X-ray diffraction. The complex crystallizes in the triclinic space group P1. The iron atom (site symmetry ) is hexa-coordinated, adopting a slightly distorted octahedral geometry defined by two 1H-imidazo[4,5-b]pyridinium ligands and four chloride anions. In the crystal, N—H⋯Cl hydrogen bonds generate two-dimensional layers parallel to the ab plane, while the three-dimensional supramolecular framework is further consolidated by C—H⋯Cl interactions. In addition, π–π stacking interactions contribute to the overall cohesion of the Hirshfeld surface analysis indicates the significance of various intermolecular contacts in the crystal packing, with major contributions from Cl⋯H/H⋯Cl (43.2%), H⋯H (22.5%), C⋯H/H⋯C (16.4%), H⋯N/N⋯H (4.4%), N⋯C/C⋯N (3.7%), C⋯C (3.6%), Cl⋯N/N⋯Cl (3.2%), Cl⋯C/C⋯Cl (2.4%), and N⋯N (0.6%) interactions.
Keywords: 4-azabenzimidazole; iron; crystal structure; Hirshfeld surface analysis.
CCDC reference: 2505852
1. Chemical context
The coordination chemistry of iron has attracted great interest due to the importance of iron-based coordination compounds and their applications in various fields such as catalysis (Sheldon & Kochi, 1981
; Meunier et al., 2000
), magnetism (Toftlund, 1989
; Gütlich, 1981
) and bioinorganic chemistry, particularly in simulating the behaviour of enzymes involved in electron transfer and oxygen transfer processes (Reedijk & Bouwman, 1999
). Iron is frequently hexacoordinated in its coordination complexes; it is important to note that the number, type, and geometric arrangement of ligands around the metal centre significantly influence the previously mentioned properties (Börzel et al., 2002
).
Nitrogen-containing heterocycles, which feature one or more nitrogen atoms within their ring structures, represent important and distinctive categories of heterocycles (Li et al., 2023
). These heterocycles play an important role in coordination chemistry as N-donor ligands. Among them, benzimidazole is particularly well known and widely used as a nitrogen-donor ligand (Ana, 2019
).
Benzimidazole contains two N-donor atoms that can coordinate transition metals (Sundberg & Martin, 1974
). The imidazole ring consists of two nitrogen atoms, one of which is pyrrole-like, with its lone pair electrons contributing to the aromatic sextet. The second N atom is pyridine-like, with a non-delocalized lone pair that imparts basic properties (Haga, 2003
). The substitution of a CH group in the benzene ring with a nitrogen atom, which is necessarily pyridine-like, imparts a basicity similar to that of nitrogen in the imidazole ring. This modification enhances the ligand's basic properties by introducing a second pyridine-like nitrogen atom, thereby increasing its binding affinity to metal ions (Zapata et al., 2008
). Thus, 4-azabenzimidazole consists of a fused imidazole and pyridine system. The positioning of its basic nitrogen atoms enables the potential for chelation with metal ions, facilitating the formation of four-membered rings (Korabik et al., 1998
). The three nitrogen atoms in 4-azabenzimidazole, each with distinct characteristics, provide versatility to the ligand, allowing it to coordinate with metal ions in various modes, including monodentate, bidentate, chelating, and bridging arrangements.
2. Structural commentary
The title complex crystallizes with the Fe2+ atom located on a crystallographic centre of symmetry, generating the complete molecule by inversion symmetry. As a result, the structure consists of two symmetry-related halves forming a discrete mononuclear complex with an octahedral geometry and a trans configuration for the N atoms. The Fe2+ centre is coordinated by two nitrogen atoms from two N-donor 1H-imidazo[4,5-b]pyridinium ligands in the axial positions and four chloride ions in the equatorial plane (Fig. 1
), resulting in an N2Cl4 coordination environment. The bond lengths and angles (Table 1
) are consistent with a slightly distorted octahedral geometry. The axial Fe1—N1 bond length is 2.2256 (9) Å, whereas the equatorial Fe1—Cl1 and Fe1—Cl2 bond lengths are 2.5845 (2) and 2.4564 (2) Å, respectively. These values fall within the expected range for Fe2+ octahedral complexes reported in the literature (Rettig et al., 2000
; Rusbridge et al., 2018
). The bond angles around the metal centre are close to the ideal values of 90°, with only minor deviations, confirming a near-ideal octahedral coordination geometry. Moreover, the iron(II) atom lies within the equatorial plane, while the five-membered imidazole and six-membered pyridine rings of the chelating ligand are approximately coplanar, allowing for efficient coordination and contributing to the overall planarity of the ligand framework. The cohesion of the molecular structure is achieved through an intramolecular N—H⋯Cl hydrogen bond formed between the nitrogen atom of the imidazole ring and a chloride ion acceptor [N3—H3⋯Cl1i; symmetry code: (i) −x, −y, −z).
|
| | Figure 1 ORTEP view of the structure of the title complex showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. Symmetry code: (i) −x, −y, −z. |
3. Supramolecular features
The of the title compound is consolidated by various supramolecular interactions, including classical and non-classical hydrogen bonds, as well as π–π stacking interactions. All N—H and C—H groups of the 1H-imidazo[4,5-b]pyridinium ligand, except for the C4—H4 group, act as hydrogen-bond donors, while the chloride ions serve as acceptors, forming N—H⋯Cl and C—H⋯Cl interactions (Table 2
). Furthermore, N2—H2⋯Cl2ii hydrogen bonding links the molecules into chains along the [110] direction. These chains adopt a ribbon-like arrangement featuring R22(12) ring motifs (Fig. 2
; Bernstein et al., 1995
). These chains are further connected via classical hydrogen bonds (N2—H2⋯Cl2iii) into a two-dimensional network lying parallel to the (001) plane, based on alternating R22(4) and R22(12) ring motifs (Fig. 3
). Extension into a three-dimensional network occurs via non-classical C—H⋯Cl hydrogen bonds C5—H5⋯Cl2v and C6—H6⋯Cl1iv, forming R22(14), R42(14) and R32(11) graph-set motifs (Fig. 4
).
|
| | Figure 2 Network propagation along the [110] direction through N2—H2⋯Cl2ii hydrogen bonds, forming R22(12) graph-set motifs (highlighted in purple). |
| | Figure 3 Two-dimensional network of the title compound parallel to the ab plane, showing N—H⋯Cl hydrogen bonds and associated ring motifs. |
| | Figure 4 (a) Fragment of the supramolecular crystal structure packing of the title compound, (b) hydrogen-bonding patterns. Hydrogen bonds are indicated by dashed blue lines. |
Overall, the crystal packing is reinforced by π–π stacking interactions involving both the six-membered pyridine rings (Cg6) and the five-membered imidazole rings (Cg5) of neighbouring molecules in a parallel-displaced arrangement (Fig. 5
) with centroid–centroid distances of 3.591 (1) and 3.459 (1) Å, respectively
| Figure 5 π–π stacking interactions in the title complex. Cg(5) and Cg(6) are the centroids of imidazole rings (pink) and pyridine rings (blue), respectively, [symmetry codes: (i) 1 − x, 1 − y, 1 − z; (ii) 1 − x, 1 − y, −z]. |
To gain a deeper insight into the intermolecular interactions responsible for the cohesion and stability of the supramolecular structure, a Hirshfeld surface (HS) analysis was performed using Crystal Explorer 21 (Spackman & Jayatilaka, 2009
; Spackman et al., 2021
). The two-dimensional fingerprint plots (Fig. 6
; Spackman & McKinnon, 2002
) show that Cl⋯H/H⋯Cl contacts are the most significant (43.2%), followed by H⋯H (22.5%) and C⋯H/H⋯C (16.4%). Minor contributions arise from H⋯N/N⋯H (4.4%), C⋯N/N⋯C (3.7%), C⋯C (3.6%), and Cl⋯N/N⋯Cl (3.2%), while Cl⋯C/C⋯Cl (2.4%) and N⋯N (0.6%) are negligible. Overall, the HS analysis emphasizes the role of hydrogen bonding and van der Waals interactions (Hökelek et al., 2018
; Hathwar et al., 2015
) in consolidating the packing, together with π–π stacking. In addition, it confirms the absence of halogen–halogen contacts, as the Cl⋯Cl contribution is 0% (Moon et al., 2020
).
| | Figure 6 Two-dimensional fingerprint plots for the title compound with the corresponding Hirshfeld surface dnorm for all contacts and those delineated into specific contacts. The di and de values represent the nearest internal and external distances from specific points on the Hirshfeld surface (in Å). |
4. Database survey
A Cambridge Structural Database (CSD, version 5.45, November 2023 update; Groom et al., 2016
; Bruno et al., 2002
) search revealed only one reported iron complex with 4-azabenzimidazole, where the ligand acts in a bridging mode via the two imidazole N atoms generating a three-dimensional diamond-like framework (refcode XASGON; Rettig et al., 2000
). A zinc analogue with the same coordination mode has also been described (MIHHOB; Hayashi et al., 2007
).
In contrast, several copper complexes display diverse coordination behaviours. In some cases, the ligand coordinates in a monodentate fashion via the amine nitrogen [GEZCOF (Domínguez-Martín et al., 2013
); BUNZEQ (Choquesillo-Lazarte et al., 2010
)], while in others, coordination occurs through the imine nitrogen, as in the title compound (GEZCIZ; Domínguez-Martín et al., 2013
). Alternatively, 4-azabenzimidazole can act as a bridging ligand through both the imine and pyridinic nitrogen atoms, affording dinuclear CuII paddlewheel-like architectures (TETGIJ and TETGOP; van Albada et al., 2006
).
To date, no structures have been reported with 4-azabenzimidazole protonated at the pyridinic nitrogen atom, until the present compound.
5. Experimental
All chemicals were commercially available, purchased from Sigma-Aldrich, and used as received without purification.
5.1. Synthesis and crystallization
FeCl2·4H2O (0.198 g, 1 mmol) was dissolved in 10 mL of methanol in the presence of a few drops of ascorbic acid. A solution of 4-azabenzimidazole (0.238 g, 2 mmol) in 10 mL of acetonitrile was then added, resulting in a brown mixture, which was heated under stirring until boiling. The solution was left to evaporate slowly over several days, yielding green crystals of the title compound, suitable for single-crystal X-ray diffraction analysis.
5.2. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. All hydrogen atoms were located from difference Fourier maps and refined freely with isotropic displacement parameters.
|
Supporting information
CCDC reference: 2505852
contains datablocks global, I. DOI: https://doi.org/10.1107/S2056989025010564/vu2014sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989025010564/vu2014Isup2.hkl
| [FeCl4(C6H6N3)2] | Z = 1 |
| Mr = 437.93 | F(000) = 220 |
| Triclinic, P1 | Dx = 1.853 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 6.9242 (2) Å | Cell parameters from 30213 reflections |
| b = 7.5223 (2) Å | θ = 3.1–32.9° |
| c = 8.6704 (2) Å | µ = 1.65 mm−1 |
| α = 106.967 (2)° | T = 100 K |
| β = 98.665 (2)° | Prism, green |
| γ = 109.174 (2)° | 0.1 × 0.09 × 0.08 mm |
| V = 392.51 (1) Å3 |
| Nonius KappaCCD diffractometer | Rint = 0.026 |
| Radiation source: fine-focus sealed tube | θmax = 32.9°, θmin = 3.1° |
| ω scans | h = −10→10 |
| 30304 measured reflections | k = −11→11 |
| 2818 independent reflections | l = −12→13 |
| 2650 reflections with I > 2σ(I) |
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.019 | All H-atom parameters refined |
| wR(F2) = 0.049 | w = 1/[σ2(Fo2) + (0.0225P)2 + 0.1909P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.07 | (Δ/σ)max = 0.001 |
| 2818 reflections | Δρmax = 0.51 e Å−3 |
| 130 parameters | Δρmin = −0.26 e Å−3 |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| x | y | z | Uiso*/Ueq | ||
| Fe1 | 0.00000 | 0.00000 | 0.00000 | 0.0091 (1) | |
| Cl1 | 0.11270 (3) | −0.15421 (3) | −0.26126 (3) | 0.0118 (1) | |
| Cl2 | 0.10569 (3) | −0.21585 (3) | 0.12967 (3) | 0.0112 (1) | |
| N1 | 0.32581 (13) | 0.24252 (12) | 0.09987 (10) | 0.0104 (2) | |
| N2 | 0.65992 (13) | 0.42459 (12) | 0.10840 (10) | 0.0110 (2) | |
| N3 | 0.30049 (13) | 0.49999 (12) | 0.33328 (10) | 0.0116 (2) | |
| C1 | 0.48880 (15) | 0.24861 (14) | 0.03344 (12) | 0.0112 (2) | |
| C2 | 0.40177 (14) | 0.42778 (13) | 0.22624 (11) | 0.0096 (2) | |
| C3 | 0.61149 (14) | 0.54528 (14) | 0.23671 (11) | 0.0101 (2) | |
| C4 | 0.72138 (15) | 0.73656 (14) | 0.35954 (12) | 0.0127 (2) | |
| C5 | 0.61028 (16) | 0.80452 (15) | 0.46871 (12) | 0.0142 (2) | |
| C6 | 0.40167 (16) | 0.68616 (15) | 0.45319 (12) | 0.0136 (2) | |
| H1 | 0.486 (2) | 0.141 (2) | −0.0572 (18) | 0.014 (3)* | |
| H2 | 0.779 (3) | 0.447 (3) | 0.084 (2) | 0.025 (4)* | |
| H3 | 0.169 (3) | 0.421 (3) | 0.324 (2) | 0.028 (4)* | |
| H4 | 0.867 (2) | 0.817 (2) | 0.3706 (19) | 0.018 (4)* | |
| H5 | 0.676 (2) | 0.934 (2) | 0.5580 (19) | 0.019 (4)* | |
| H6 | 0.320 (2) | 0.728 (2) | 0.5245 (19) | 0.018 (3)* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Fe1 | 0.0081 (1) | 0.0083 (1) | 0.0104 (1) | 0.0026 (1) | 0.0036 (1) | 0.0031 (1) |
| Cl1 | 0.0110 (1) | 0.0115 (1) | 0.0125 (1) | 0.0038 (1) | 0.0055 (1) | 0.0035 (1) |
| Cl2 | 0.0110 (1) | 0.0109 (1) | 0.0127 (1) | 0.0049 (1) | 0.0048 (1) | 0.0043 (1) |
| N1 | 0.0098 (3) | 0.0095 (3) | 0.0113 (3) | 0.0034 (3) | 0.0035 (3) | 0.0030 (3) |
| N2 | 0.0089 (3) | 0.0120 (3) | 0.0127 (3) | 0.0042 (3) | 0.0048 (3) | 0.0044 (3) |
| N3 | 0.0112 (3) | 0.0114 (3) | 0.0131 (3) | 0.0043 (3) | 0.0058 (3) | 0.0047 (3) |
| C1 | 0.0105 (4) | 0.0112 (4) | 0.0121 (4) | 0.0045 (3) | 0.0037 (3) | 0.0038 (3) |
| C2 | 0.0092 (4) | 0.0092 (4) | 0.0108 (3) | 0.0033 (3) | 0.0034 (3) | 0.0042 (3) |
| C3 | 0.0095 (4) | 0.0109 (4) | 0.0106 (4) | 0.0040 (3) | 0.0033 (3) | 0.0047 (3) |
| C4 | 0.0117 (4) | 0.0112 (4) | 0.0131 (4) | 0.0022 (3) | 0.0023 (3) | 0.0046 (3) |
| C5 | 0.0161 (4) | 0.0109 (4) | 0.0133 (4) | 0.0041 (3) | 0.0033 (3) | 0.0030 (3) |
| C6 | 0.0166 (4) | 0.0125 (4) | 0.0127 (4) | 0.0069 (3) | 0.0058 (3) | 0.0036 (3) |
| Fe1—Cl1 | 2.5845 (2) | N3—C6 | 1.3488 (14) |
| Fe1—Cl2 | 2.4564 (2) | C2—C3 | 1.4030 (15) |
| Fe1—N1 | 2.2256 (9) | N2—H2 | 0.86 (2) |
| Fe1—Cl1i | 2.5845 (2) | N3—H3 | 0.89 (2) |
| Fe1—Cl2i | 2.4564 (2) | C3—C4 | 1.3877 (14) |
| Fe1—N1i | 2.2256 (9) | C4—C5 | 1.3944 (15) |
| N1—C1 | 1.3360 (14) | C5—C6 | 1.3871 (16) |
| N1—C2 | 1.3686 (13) | C1—H1 | 0.942 (15) |
| N2—C1 | 1.3469 (14) | C4—H4 | 0.964 (15) |
| N2—C3 | 1.3774 (13) | C5—H5 | 0.958 (15) |
| N3—C2 | 1.3418 (13) | C6—H6 | 0.954 (15) |
| Cl1—Fe1—Cl2 | 89.75 (1) | N1—C2—N3 | 127.71 (9) |
| Cl1—Fe1—N1 | 87.59 (2) | N1—C2—C3 | 111.74 (9) |
| Cl1—Fe1—Cl1i | 180.00 | N3—C2—C3 | 120.54 (9) |
| Cl1—Fe1—Cl2i | 90.25 (1) | C3—N2—H2 | 128.4 (13) |
| Cl1—Fe1—N1i | 92.41 (2) | C1—N2—H2 | 124.0 (13) |
| Cl2—Fe1—N1 | 92.50 (2) | N2—C3—C4 | 134.70 (10) |
| Cl1i—Fe1—Cl2 | 90.25 (1) | C2—C3—C4 | 121.25 (9) |
| Cl2—Fe1—Cl2i | 180.00 | N2—C3—C2 | 104.04 (8) |
| Cl2—Fe1—N1i | 87.50 (2) | C2—N3—H3 | 118.1 (12) |
| Cl1i—Fe1—N1 | 92.41 (2) | C6—N3—H3 | 122.1 (12) |
| Cl2i—Fe1—N1 | 87.50 (2) | C3—C4—C5 | 116.15 (10) |
| N1—Fe1—N1i | 180.00 | C4—C5—C6 | 121.22 (10) |
| Cl1i—Fe1—Cl2i | 89.75 (1) | N3—C6—C5 | 121.01 (10) |
| Cl1i—Fe1—N1i | 87.59 (2) | N1—C1—H1 | 123.8 (9) |
| Cl2i—Fe1—N1i | 92.50 (2) | N2—C1—H1 | 122.6 (9) |
| Fe1—N1—C1 | 126.40 (7) | C3—C4—H4 | 122.1 (9) |
| Fe1—N1—C2 | 129.89 (7) | C5—C4—H4 | 121.7 (9) |
| C1—N1—C2 | 103.25 (9) | C4—C5—H5 | 121.1 (9) |
| C1—N2—C3 | 107.32 (9) | C6—C5—H5 | 117.6 (9) |
| C2—N3—C6 | 119.81 (9) | N3—C6—H6 | 115.3 (9) |
| N1—C1—N2 | 113.63 (9) | C5—C6—H6 | 123.7 (9) |
| Cl1—Fe1—N1—C1 | −7.58 (8) | C3—N2—C1—N1 | 1.16 (12) |
| Cl1—Fe1—N1—C2 | 163.34 (8) | C1—N2—C3—C2 | −1.28 (11) |
| Cl2—Fe1—N1—C1 | 82.07 (8) | C1—N2—C3—C4 | 177.73 (11) |
| Cl2—Fe1—N1—C2 | −107.02 (8) | C6—N3—C2—N1 | 178.75 (10) |
| Cl1i—Fe1—N1—C1 | 172.42 (8) | C6—N3—C2—C3 | −0.74 (14) |
| Cl1i—Fe1—N1—C2 | −16.66 (8) | C2—N3—C6—C5 | −0.45 (15) |
| Cl2i—Fe1—N1—C1 | −97.93 (8) | N1—C2—C3—N2 | 1.06 (11) |
| Cl2i—Fe1—N1—C2 | 72.98 (8) | N1—C2—C3—C4 | −178.12 (9) |
| Fe1—N1—C1—N2 | 172.38 (7) | N3—C2—C3—N2 | −179.38 (9) |
| C2—N1—C1—N2 | −0.47 (11) | N3—C2—C3—C4 | 1.45 (15) |
| Fe1—N1—C2—N3 | 7.58 (15) | N2—C3—C4—C5 | −179.78 (11) |
| Fe1—N1—C2—C3 | −172.89 (7) | C2—C3—C4—C5 | −0.90 (15) |
| C1—N1—C2—N3 | −179.92 (10) | C3—C4—C5—C6 | −0.28 (15) |
| C1—N1—C2—C3 | −0.39 (11) | C4—C5—C6—N3 | 0.98 (16) |
| Symmetry code: (i) −x, −y, −z. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···Cl2ii | 0.86 (2) | 2.66 (2) | 3.3061 (10) | 133.0 (17) |
| N2—H2···Cl2iii | 0.86 (2) | 2.56 (2) | 3.1862 (9) | 130.4 (17) |
| N3—H3···Cl1i | 0.89 (2) | 2.15 (2) | 2.9944 (10) | 160.7 (19) |
| C1—H1···Cl1 | 0.942 (15) | 2.702 (15) | 3.2841 (10) | 120.7 (11) |
| C5—H5···Cl2iv | 0.958 (15) | 2.725 (15) | 3.6357 (10) | 159.1 (12) |
| C6—H6···Cl1v | 0.954 (15) | 2.641 (15) | 3.5932 (11) | 176.2 (13) |
| Symmetry codes: (i) −x, −y, −z; (ii) x+1, y+1, z; (iii) −x+1, −y, −z; (iv) −x+1, −y+1, −z+1; (v) x, y+1, z+1. |
| Cg ⋯ Cg (Ring) | Cg ⋯ Cg (Å) | α(°) | β(°) | γ(°) |
| Cg(5) ⋯ Cg(5)i | 3.459 (1) | 0.00 | 23.13 | 23.13 |
| Cg(6) ⋯ Cg(6)ii | 3.591 (1) | 0.00 | 21.67 | 21.67 |
| Symmetry codes: (i) 1-x,1-y,-z, (ii) 1-x,1-y,1-z Cg(5): center of gravity of imidazole ring. Cg(6): center of gravity of pyridine ring. α: dihedral angle between ring planes. β, γ: Slipping angles defined by centroid–centroid vector and the normal to the plane of the ring. |
Acknowledgements
The authors acknowledge the Algerian Ministry of Higher Education and Scientific Research, the Algerian Directorate-General for Scientific Research and Technological Development for support.
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