research communications
and Hirshfeld surface analysis of 4′-chloro-5-oxo-N-phenyl-3-(thiophen-2-yl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-carboxamide monohydrate
aFaculty of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan, bPeoples' Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation, cN. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation, dDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye, eInstitute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, M. Ulugbek Str.,83, Tashkent, 100125, Uzbekistan, and fDepartment of Chemistry, Faculty of Science, University of Kordofan, Sudan
*Correspondence e-mail: [email protected]
The title molecule, C23H18ClNO2S·H2O, has a stable conformation with S(5) and S(6) rings formed by intramolecular C—H⋯S and C—H⋯O hydrogen bonds. The water molecule and the carboxyl oxygen atom of the main molecule also make an O—H⋯O hydrogen bond. In the crystal, N—H⋯O, O—H⋯Cl, O—H⋯O and C—H⋯O hydrogen bonds connect molecules to form a three-dimensional network. The molecules are further connected by C—H⋯π interactions and face-to-face π–π interactions into layers parallel to the (001) plane.
Keywords: crystal structure; face-to-face π–π interactions; thiophene ring; disorder; Hirshfeld surface analysis.
CCDC reference: 2577688
1. Chemical context
Michael addition and aldol condensation reactions play a significant role in carbon–carbon bond formation, providing highly efficient and versatile strategies for the construction of complex molecular frameworks (Naghiyev et al., 2023
; Mamedov & Khalilov, 2025
). These transformations enable the formation of new C—C bonds under relatively mild conditions, often with excellent regio- and stereoselectivity (Safarova et al., 2023
, 2024
; Tüzün et al., 2025
). Owing to these advantages, Michael addition and aldol condensation reactions are widely employed in organic synthesis, particularly in the preparation of pharmaceuticals, natural products, and advanced functional materials (Naghiyev et al., 2022
, 2024
; Karimli et al., 2023
). Among the products accessible through this synthetic approach, highly substituted cyclohexenone derivatives have attracted considerable attention owing to their structural diversity, widespread occurrence in both natural and synthetic compounds, and their utility as versatile intermediates in organic synthesis (Asgarova et al., 2019
; Abdel-Galil et al., 2022
). In addition to their synthetic importance, selected members of this class have been reported to exhibit a variety of biological activities, making cyclohexenone-based frameworks attractive targets in medicinal chemistry (Khan et al., 2021
; Shikhaliyev et al., 2025
). In particular, aryl-substituted cyclohexenone carboxamides represent valuable molecular scaffolds for the synthesis of structurally diverse compounds and continue to attract interest in synthetic and structural chemistry. The incorporation of aromatic, heteroaromatic, and amide functionalities into the cyclohexenone framework further expands the scope for structural diversification and detailed investigations of their molecular and crystal structures (Lakhrissi et al., 2022
; Nosova et al., 2023
). In this context, herein we report the crystal structure and Hirshfeld surface analysis of the title compound, C23H18ClNO2S·H2O (4), as part of our ongoing investigations (Askerov et al., 2020
; Naghiyev et al., 2021
; Khalilov et al., 2011
).
A reaction route for the formation of the title compound 4 is depicted in Fig. 1
. The reaction is initiated by the Michael addition of the acetoacetamide 1 to the α,β-unsaturated chalcone 2, leading to the formation of intermediate A. Under basic conditions, intermediate A undergoes intramolecular alkylation to form compound 3, which then undergoes an intramolecular aldol condensation, resulting in the formation of the cyclohexane ring. Subsequent dehydration of this intermediate leads the corresponding cyclohexenone derivative 4.
| Figure 1 A reaction route for the formation of the title compound 4. |
2. Structural commentary
The conformation of the title molecule is stable with the C—H⋯S and C—H⋯O intramolecular hydrogen bonding, forming S(5) and S(6) rings (Fig. 2
, Table 1
; Bernstein et al., 1995
). Additionally, an Ow1—Hw1A⋯O2 hydrogen bond exists between the water molecule and the main molecule's carboxyl oxygen atom. Each molecule contains two stereogenic (chiral) centres: in the arbitrarily chosen asymmetric unit, C2 and C3 have S and R configurations, respectively. The thiophene ring (S1/C13–C17) is disordered by a 180° rotation over two orientations around the C3—C14 bond in a 0.5:0.5 ratio. The cyclohexene ring (C1–C6) is puckered with Cremer & Pople (1975
) puckering parameters QT = 0.4622 (9) Å, θ = 54.10 (11)° and φ = 112.74 (14)°. The r.m.s plane (r.m.s. deviation = 0.005 Å) of the cyclohexane ring (C1–C6) subtends dihedral angles of 73.1 (2), 70.72 (5) and 25.34 (4) °, respectively, with the thiophene (S1/C14–C17), phenyl (C8–C13) and chlorophenyl (C18–C23) rings. The thiophene ring subtends angles of 69.5 (2) and 86.6 (2)° with the phenyl and chlorophenyl rings, respectively. The angle between the phenyl and chlorophenyl rings is 84.58 (5)°. The bond lengths and angles in the title compound are in good agreement with those in the compounds discussed in the Database survey section.
|
| Figure 2 Molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. For clarity, only one component of the disordered thiophene ring is shown. |
3. Supramolecular features
In the crystal, molecules are linked to form a three-dimensional network via intermolecular N1—H1⋯Ow1, Ow1—Hw1B⋯Cl1, Ow1—Hw1B⋯O1, C2—H2⋯Ow1, C16—H16⋯O2 and C17′—H17′⋯O2 hydrogen bonds (Figs. 3
and 4
, Table 1
). In addition, C—H⋯π interactions and face-to-face π–π interactions [Cg5⋯Cg5(−x, 2 − y, 1 − z) = 3.9020 (6) Å, slippage = 1.970 Å and Cg5⋯Cg5(1 − x, 2 − y, 1 − z) = 3.5513 (6) Å, slippage = 0.158 Å; where Cg5 is the centroid of the C18–C23 ring of the chlorophenyl group] connect the molecules, forming layers parallel to the (001) plane (Figs. 5
and 6
, Table 1
).
| Figure 3 A view of the packing along the b-axis direction of the title compound with N—H⋯O, O—H⋯O, O—H⋯Cl and C—H⋯O hydrogen bonds shown as dashed lines. Hydrogen atoms that do not participate in hydrogen bonding are not displayed for clarity. |
| Figure 4 A view of the packing along the c-axis direction of the title compound with N—H⋯O, O—H⋯O, O—H⋯Cl and C—H⋯O hydrogen bonds shown as dashed lines. |
| Figure 5 A view of the packing along the a-axis direction of the title compound with C—H⋯π and π–π interactions shown as dashed lines. Hydrogen atoms that do not engage in hydrogen bonding and water molecules are not shown for clarity. |
| Figure 6 A view of the packing along the b-axis direction of the title compound with C—H⋯π and π–π interactions shown as dashed lines. |
4. Hirshfeld surface analysis
The Hirshfeld surfaces and two-dimensional fingerprint plots were produced using Crystal Explorer 17.5 (Spackman et al., 2021
). Hirshfeld surfaces enable the presentation of intermolecular interactions by indicating short and long contacts, as well as the relative strength of the interactions, with different colors and intensities. Fig. 7
displays the title compound's three-dimensional Hirshfeld surface plotted over dnorm in the range −0.6301 to +1.6037 a.u. The red patch surrounding O1, O2, Ow1 and Cl1 are caused by the N—H⋯O, O—H⋯Cl, O—H⋯O and C—H⋯O interactions (Table 1
), which are crucial to the molecular packing of the title molecule.
| Figure 7 View of the three-dimensional Hirshfeld surface of the title compound plotted over dnorm in the range −0.6301 to +1.6037 a.u. |
Fig. 8
a shows the overall two-dimensional fingerprint plot for the title compound, while Fig. 8
b–e show those that are divided into H⋯H, C⋯H/H⋯C, O⋯H/H⋯O and Cl⋯H/H⋯Cl contacts. Tables 1
and 2
provide numerical information of the various contacts. The percentage contributions to the Hirshfeld surfaces from the different interatomic contacts are as follows: H⋯H (Fig. 8
b; 43.2%), C⋯H/H⋯C (Fig. 8
c; 22.2%), O⋯H/H⋯O (Fig. 8
d; 12.5%) and Cl⋯H/H⋯Cl (Fig. 8
e; 9.8%). The C⋯C (4.8%), S⋯H/H⋯S (3.2%), O⋯C/C⋯O (1.3%), N⋯H/H⋯N (1.2%), Cl⋯O/O⋯Cl (0.8%), Cl⋯C/C⋯Cl (0.7%) and O⋯O (0.3%) contacts are additional modest contributions to the Hirshfeld surface.
|
| Figure 8 The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) O⋯H/H⋯O and (e) Cl⋯H/H⋯Cl interactions. The di and de values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface. |
5. Database survey
A search of the Cambridge Structural Database (CSD, version 6.00, updated April 2025; Groom et al., 2016
) for the title compound revealed two compounds: 5-oxo-N-phenyl-3-(thiophen-2-yl)-2,3,4,5-tetrahydro-1,1′-biphenyl-4-carboxamide (CSD ref code AHEMIN: Aliyeva et al., 2025
) and dimethyl-4′-bromo-3-oxo-5-(thiophen-2-yl)-3,4,5,6-tetrahydro[1,1′-biphenyl]- 2,4-dicarboxylate (WOMWUU: Naghiyev et al., 2024
). AHEMIN and WOMWUU crystallize in the monoclinic Cc and P2/1c space groups, respectively.
The two molecules in the of AHEMIN have different carboxamide moiety conformations. Intermolecular N—H⋯O hydrogen bonds in the crystal connect the molecules into chains that propagate parallel to the c-axis. While there are no π–π interactions between the molecules, there are weak C—H⋯π(ring) interactions. In WOMWUU, molecules form ribbons in the b-axis direction as a result of intermolecular C—H⋯S hydrogen bonds with R22(10) ring motifs. van der Waals forces between the ribbons maintain the cohesiveness of the crystal structure, whereas C—H⋯π interactions consolidate the ribbon structure. The thiophene group is disordered by a 180° rotation around one bond.
6. Synthesis and crystallization
A solution of 0.443 g (0.0025 mol) acetoacetanilide and 0.623 g (0.0025 mol) 1-phenyl-3-(thiophen-2-yl)prop-2-en-1-one (5.10 mmol) in 30 ml ethanol (10 ml) was stirred for 1 h. After that, 3 drops of methylpiperazine were added to the solution and the mixture was then stirred for 3 h while the course of reaction was monitored by TLC. After the reaction completion, the solvent was removed under reduced pressure and the residue was recrystallized from an ethanol–water mixture (m.p. = 391 K, yield 73%).
1H NMR (300 MHz, acetone-d6, δ, ppm.): 2.22 and 2.72 (d-d, 2H, CH2, 2JH–H = 16.2 Hz, 3JH–H = 8.3 Hz), 3.54 (t-t, 1H, CH, 3JH–H = 8.3 Hz, 3JH–H = 10.3 Hz), 3.78.15 (d, 1H, CH, 3JH–H = 10.3 Hz), 6.59–7.67 (m, 13H, arom. and =CH), 9.56 (s, 1H, NH); 13C NMR (75 MHz, acetone-d6, δ, ppm.): 31.26 (CH), 44.45 (CH2), 52.87 (CH), 119.08 (CHarom.), 119.20 (CHarom.), 120.35 (Carom.), 123.17 (=CH), 127.00 (CHarom.), 128.69 (CHarom.), 129.47 (CHarom.), 130.97 (CHarom.), 132.13 (Carom.), 131.13 (CHarom.), 133.43 (Carom.), 131.90 (CHarom.), 138.36 (Carom.), 147.33 (Cquat..), 167.27 (CO), 194.27 (CO).
7. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. All C-bound hydrogen atoms were positioned geometrically (C—H = 0.95–1.00 Å) and refined using a riding model, with Uiso(H) = 1.2Ueq(C). The H atoms of the water molecule and NH group were located from difference-Fourier maps and refined isotopically with dependent isotropic thermal parameters with Uiso(H) = 1.2Ueq(N) and Uiso(H) = 1.5Ueq(O). The thiophene ring (S1/C13–C17) is disordered by a 180° rotation over two orientations around the C3—C14 bond in a 0.5:0.5 ratio. Using the FLAT command, both components of the disordered thiophene ring were restricted to the same plane. In addition, the DFIX command was used to restrain the S—C distances S1—C17, S1—C14, S1′—C17′ and S1′—C14 to fix their bond lengths to 1.72 Å. Furthermore, DELU, SIMU and ISOR commands were used in the refinement to restrain the thermal factors of the disordered C15 S1′, C16 C17′, C17 C16′ and C15′ S1components. Using the SADI command, the C—C lengths of the thiophene rings were pushed to be the same.
|
Supporting information
CCDC reference: 2577688
contains datablock I. DOI: https://doi.org/10.1107/S2056989026007826/nx2038sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989026007826/nx2038Isup2.hkl
| C23H20ClNO3S | Z = 2 |
| Mr = 425.91 | F(000) = 444 |
| Triclinic, P1 | Dx = 1.373 Mg m−3 |
| a = 7.1577 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 11.1279 (4) Å | Cell parameters from 9950 reflections |
| c = 13.2067 (5) Å | θ = 2.3–32.6° |
| α = 85.412 (1)° | µ = 0.31 mm−1 |
| β = 87.973 (1)° | T = 100 K |
| γ = 79.348 (1)° | Prism, colourless |
| V = 1030.25 (7) Å3 | 0.24 × 0.22 × 0.13 mm |
| Bruker D8 QUEST PHOTON-III area detector diffractometer | 6538 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed X-ray tube | Rint = 0.026 |
| φ and ω scans | θmax = 32.6°, θmin = 2.3° |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015). | h = −10→10 |
| Tmin = 0.707, Tmax = 0.746 | k = −16→16 |
| 29949 measured reflections | l = −19→19 |
| 7470 independent reflections |
| Refinement on F2 | Primary atom site location: difference Fourier map |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: mixed |
| wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0492P)2 + 0.2767P] where P = (Fo2 + 2Fc2)/3 |
| 7470 reflections | (Δ/σ)max = 0.001 |
| 307 parameters | Δρmax = 0.47 e Å−3 |
| 171 restraints | Δρmin = −0.32 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| C1 | 0.25524 (13) | 0.54707 (8) | 0.56920 (7) | 0.01765 (15) | |
| C2 | 0.23078 (11) | 0.53684 (7) | 0.68443 (6) | 0.01457 (14) | |
| H2 | 0.091669 | 0.556861 | 0.701114 | 0.017* | |
| C3 | 0.32834 (12) | 0.62985 (7) | 0.73273 (6) | 0.01465 (14) | |
| H3 | 0.468240 | 0.607450 | 0.718973 | 0.018* | |
| C4 | 0.25951 (12) | 0.75980 (7) | 0.68385 (6) | 0.01542 (14) | |
| H4A | 0.126226 | 0.788477 | 0.705986 | 0.019* | |
| H4B | 0.337635 | 0.815674 | 0.708601 | 0.019* | |
| C5 | 0.27020 (12) | 0.76730 (7) | 0.56990 (6) | 0.01545 (14) | |
| C6 | 0.27143 (14) | 0.66615 (8) | 0.51952 (7) | 0.02000 (16) | |
| H6 | 0.283576 | 0.673274 | 0.447529 | 0.024* | |
| C7 | 0.30438 (12) | 0.40503 (7) | 0.72605 (6) | 0.01440 (14) | |
| C8 | 0.18480 (13) | 0.21554 (7) | 0.78940 (7) | 0.01687 (15) | |
| C9 | 0.35133 (14) | 0.14688 (8) | 0.83063 (7) | 0.02207 (17) | |
| H9 | 0.465042 | 0.179672 | 0.827866 | 0.026* | |
| C10 | 0.34922 (16) | 0.02935 (9) | 0.87605 (8) | 0.02666 (19) | |
| H10 | 0.462878 | −0.017716 | 0.903714 | 0.032* | |
| C11 | 0.18444 (17) | −0.02001 (9) | 0.88158 (8) | 0.0278 (2) | |
| H11 | 0.184360 | −0.099511 | 0.913681 | 0.033* | |
| C12 | 0.02000 (17) | 0.04840 (9) | 0.83956 (9) | 0.0293 (2) | |
| H12 | −0.093377 | 0.015232 | 0.842451 | 0.035* | |
| C13 | 0.01940 (14) | 0.16499 (9) | 0.79328 (8) | 0.02353 (18) | |
| H13 | −0.093866 | 0.210660 | 0.764102 | 0.028* | |
| C14 | 0.29646 (15) | 0.62858 (8) | 0.84584 (7) | 0.02117 (17) | |
| S1 | 0.07641 (17) | 0.62692 (14) | 0.90037 (9) | 0.0457 (3) | 0.5 |
| C15 | 0.4188 (7) | 0.6373 (4) | 0.9170 (4) | 0.0418 (9) | 0.5 |
| H15 | 0.548435 | 0.636045 | 0.898030 | 0.050* | 0.5 |
| C16 | 0.3628 (7) | 0.6481 (6) | 1.0190 (5) | 0.0381 (10) | 0.5 |
| H16 | 0.433302 | 0.663471 | 1.074719 | 0.046* | 0.5 |
| C17 | 0.1850 (8) | 0.6312 (7) | 1.0167 (5) | 0.0408 (12) | 0.5 |
| H17 | 0.115541 | 0.621279 | 1.078447 | 0.049* | 0.5 |
| S1' | 0.46619 (13) | 0.65996 (9) | 0.92283 (8) | 0.02844 (15) | 0.5 |
| C15' | 0.1394 (4) | 0.6163 (4) | 0.9066 (3) | 0.0273 (7) | 0.5 |
| H15' | 0.033929 | 0.592377 | 0.877244 | 0.033* | 0.5 |
| C16' | 0.1295 (7) | 0.6379 (6) | 1.0101 (5) | 0.0316 (8) | 0.5 |
| H16' | 0.024541 | 0.641524 | 1.056513 | 0.038* | 0.5 |
| C17' | 0.3053 (6) | 0.6519 (6) | 1.0255 (4) | 0.0311 (9) | 0.5 |
| H17' | 0.344876 | 0.657661 | 1.092569 | 0.037* | 0.5 |
| C18 | 0.27163 (12) | 0.88751 (7) | 0.51432 (7) | 0.01561 (14) | |
| C19 | 0.32883 (13) | 0.89587 (8) | 0.41174 (7) | 0.01929 (16) | |
| H19 | 0.374162 | 0.823119 | 0.378549 | 0.023* | |
| C20 | 0.32002 (13) | 1.00903 (8) | 0.35821 (7) | 0.02015 (16) | |
| H20 | 0.358267 | 1.014137 | 0.288616 | 0.024* | |
| C21 | 0.25466 (12) | 1.11474 (7) | 0.40751 (7) | 0.01738 (15) | |
| C22 | 0.20179 (13) | 1.11022 (8) | 0.50943 (7) | 0.01900 (16) | |
| H22 | 0.160041 | 1.183503 | 0.542488 | 0.023* | |
| C23 | 0.21107 (13) | 0.99627 (8) | 0.56233 (7) | 0.01810 (15) | |
| H23 | 0.175709 | 0.992008 | 0.632360 | 0.022* | |
| N1 | 0.16715 (10) | 0.33768 (6) | 0.74663 (6) | 0.01635 (13) | |
| H1 | 0.0502 (19) | 0.3750 (12) | 0.7331 (10) | 0.020* | |
| O1 | 0.25246 (12) | 0.45808 (6) | 0.51977 (5) | 0.02515 (15) | |
| O2 | 0.47568 (9) | 0.36629 (6) | 0.73864 (5) | 0.01807 (12) | |
| OW1 | 0.79944 (9) | 0.46463 (6) | 0.69319 (5) | 0.01883 (12) | |
| HW1A | 0.697 (2) | 0.4412 (14) | 0.7113 (11) | 0.028* | |
| HW1B | 0.787 (2) | 0.4935 (14) | 0.6336 (12) | 0.028* | |
| Cl1 | 0.24401 (3) | 1.25584 (2) | 0.33950 (2) | 0.02180 (6) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0226 (4) | 0.0124 (3) | 0.0183 (4) | −0.0035 (3) | −0.0030 (3) | −0.0012 (3) |
| C2 | 0.0153 (3) | 0.0109 (3) | 0.0178 (3) | −0.0030 (2) | −0.0001 (3) | −0.0015 (3) |
| C3 | 0.0160 (3) | 0.0113 (3) | 0.0170 (3) | −0.0031 (2) | −0.0003 (3) | −0.0021 (3) |
| C4 | 0.0169 (3) | 0.0116 (3) | 0.0181 (3) | −0.0028 (3) | −0.0004 (3) | −0.0026 (3) |
| C5 | 0.0163 (3) | 0.0116 (3) | 0.0186 (4) | −0.0023 (3) | −0.0021 (3) | −0.0015 (3) |
| C6 | 0.0312 (4) | 0.0126 (3) | 0.0169 (4) | −0.0054 (3) | −0.0030 (3) | −0.0009 (3) |
| C7 | 0.0166 (3) | 0.0115 (3) | 0.0156 (3) | −0.0037 (3) | 0.0013 (3) | −0.0022 (2) |
| C8 | 0.0216 (4) | 0.0119 (3) | 0.0175 (3) | −0.0046 (3) | 0.0040 (3) | −0.0021 (3) |
| C9 | 0.0250 (4) | 0.0155 (4) | 0.0247 (4) | −0.0027 (3) | 0.0007 (3) | 0.0014 (3) |
| C10 | 0.0363 (5) | 0.0165 (4) | 0.0250 (4) | −0.0012 (4) | 0.0012 (4) | 0.0026 (3) |
| C11 | 0.0457 (6) | 0.0146 (4) | 0.0234 (4) | −0.0086 (4) | 0.0073 (4) | −0.0004 (3) |
| C12 | 0.0372 (5) | 0.0194 (4) | 0.0342 (5) | −0.0146 (4) | 0.0059 (4) | −0.0014 (4) |
| C13 | 0.0250 (4) | 0.0171 (4) | 0.0301 (5) | −0.0089 (3) | 0.0025 (3) | −0.0010 (3) |
| C14 | 0.0335 (5) | 0.0130 (3) | 0.0177 (4) | −0.0056 (3) | −0.0003 (3) | −0.0021 (3) |
| S1 | 0.0633 (7) | 0.0539 (6) | 0.0305 (4) | −0.0366 (6) | 0.0265 (5) | −0.0197 (4) |
| C15 | 0.056 (2) | 0.0290 (16) | 0.0385 (16) | −0.0025 (14) | −0.0092 (16) | −0.0007 (12) |
| C16 | 0.060 (3) | 0.0246 (13) | 0.0310 (17) | −0.008 (2) | −0.0159 (19) | 0.0009 (11) |
| C17 | 0.058 (3) | 0.0328 (15) | 0.0297 (16) | −0.006 (2) | 0.016 (2) | 0.0002 (12) |
| S1' | 0.0355 (4) | 0.0243 (3) | 0.0253 (3) | −0.0025 (2) | −0.0107 (3) | −0.0027 (2) |
| C15' | 0.0265 (13) | 0.0261 (10) | 0.0308 (12) | −0.0103 (12) | −0.0016 (12) | 0.0012 (8) |
| C16' | 0.041 (2) | 0.0289 (16) | 0.0267 (13) | −0.0130 (17) | 0.0071 (15) | −0.0024 (10) |
| C17' | 0.040 (2) | 0.0309 (13) | 0.0195 (11) | −0.0014 (17) | −0.0011 (14) | 0.0020 (9) |
| C18 | 0.0157 (3) | 0.0114 (3) | 0.0200 (4) | −0.0027 (3) | −0.0031 (3) | −0.0010 (3) |
| C19 | 0.0215 (4) | 0.0133 (3) | 0.0230 (4) | −0.0032 (3) | 0.0020 (3) | −0.0021 (3) |
| C20 | 0.0217 (4) | 0.0150 (3) | 0.0236 (4) | −0.0044 (3) | 0.0031 (3) | 0.0001 (3) |
| C21 | 0.0141 (3) | 0.0119 (3) | 0.0264 (4) | −0.0038 (3) | −0.0032 (3) | 0.0013 (3) |
| C22 | 0.0206 (4) | 0.0115 (3) | 0.0252 (4) | −0.0022 (3) | −0.0037 (3) | −0.0027 (3) |
| C23 | 0.0216 (4) | 0.0127 (3) | 0.0204 (4) | −0.0031 (3) | −0.0037 (3) | −0.0025 (3) |
| N1 | 0.0157 (3) | 0.0119 (3) | 0.0216 (3) | −0.0037 (2) | 0.0011 (2) | −0.0003 (2) |
| O1 | 0.0433 (4) | 0.0133 (3) | 0.0204 (3) | −0.0078 (3) | −0.0033 (3) | −0.0034 (2) |
| O2 | 0.0153 (3) | 0.0154 (3) | 0.0232 (3) | −0.0030 (2) | −0.0006 (2) | 0.0004 (2) |
| OW1 | 0.0164 (3) | 0.0183 (3) | 0.0222 (3) | −0.0051 (2) | −0.0008 (2) | 0.0001 (2) |
| Cl1 | 0.01933 (10) | 0.01286 (9) | 0.03293 (12) | −0.00468 (7) | −0.00022 (8) | 0.00400 (7) |
| C1—O1 | 1.2324 (10) | C14—C15' | 1.379 (4) |
| C1—C6 | 1.4533 (12) | C14—S1 | 1.7112 (15) |
| C1—C2 | 1.5233 (12) | C14—S1' | 1.7126 (13) |
| C2—C7 | 1.5287 (11) | S1—C17 | 1.753 (7) |
| C2—C3 | 1.5396 (11) | C15—C16 | 1.401 (7) |
| C2—H2 | 1.0000 | C15—H15 | 0.9500 |
| C3—C14 | 1.5025 (12) | C16—C17 | 1.323 (6) |
| C3—C4 | 1.5362 (11) | C16—H16 | 0.9500 |
| C3—H3 | 1.0000 | C17—H17 | 0.9500 |
| C4—C5 | 1.5005 (12) | S1'—C17' | 1.755 (5) |
| C4—H4A | 0.9900 | C15'—C16' | 1.404 (8) |
| C4—H4B | 0.9900 | C15'—H15' | 0.9500 |
| C5—C6 | 1.3511 (11) | C16'—C17' | 1.321 (5) |
| C5—C18 | 1.4751 (11) | C16'—H16' | 0.9500 |
| C6—H6 | 0.9500 | C17'—H17' | 0.9500 |
| C7—O2 | 1.2346 (10) | C18—C23 | 1.4015 (12) |
| C7—N1 | 1.3494 (10) | C18—C19 | 1.4022 (13) |
| C8—C9 | 1.3942 (13) | C19—C20 | 1.3859 (12) |
| C8—C13 | 1.3993 (13) | C19—H19 | 0.9500 |
| C8—N1 | 1.4146 (11) | C20—C21 | 1.3871 (12) |
| C9—C10 | 1.3971 (13) | C20—H20 | 0.9500 |
| C9—H9 | 0.9500 | C21—C22 | 1.3847 (13) |
| C10—C11 | 1.3874 (16) | C21—Cl1 | 1.7359 (9) |
| C10—H10 | 0.9500 | C22—C23 | 1.3896 (12) |
| C11—C12 | 1.3858 (17) | C22—H22 | 0.9500 |
| C11—H11 | 0.9500 | C23—H23 | 0.9500 |
| C12—C13 | 1.3886 (13) | N1—H1 | 0.880 (13) |
| C12—H12 | 0.9500 | OW1—HW1A | 0.845 (15) |
| C13—H13 | 0.9500 | OW1—HW1B | 0.827 (16) |
| C14—C15 | 1.328 (4) | ||
| O1—C1—C6 | 121.35 (8) | C15—C14—C3 | 128.6 (2) |
| O1—C1—C2 | 120.62 (8) | C15'—C14—C3 | 131.85 (19) |
| C6—C1—C2 | 117.94 (7) | C15—C14—S1 | 109.6 (2) |
| C1—C2—C7 | 109.81 (6) | C3—C14—S1 | 121.63 (8) |
| C1—C2—C3 | 110.89 (7) | C15'—C14—S1' | 107.14 (19) |
| C7—C2—C3 | 112.27 (7) | C3—C14—S1' | 120.75 (8) |
| C1—C2—H2 | 107.9 | C14—S1—C17 | 86.2 (2) |
| C7—C2—H2 | 107.9 | C14—C15—C16 | 122.0 (4) |
| C3—C2—H2 | 107.9 | C14—C15—H15 | 119.0 |
| C14—C3—C4 | 109.73 (7) | C16—C15—H15 | 119.0 |
| C14—C3—C2 | 112.58 (7) | C17—C16—C15 | 100.9 (5) |
| C4—C3—C2 | 110.46 (7) | C17—C16—H16 | 129.6 |
| C14—C3—H3 | 108.0 | C15—C16—H16 | 129.6 |
| C4—C3—H3 | 108.0 | C16—C17—S1 | 120.5 (5) |
| C2—C3—H3 | 108.0 | C16—C17—H17 | 119.7 |
| C5—C4—C3 | 113.34 (7) | S1—C17—H17 | 119.7 |
| C5—C4—H4A | 108.9 | C14—S1'—C17' | 88.12 (19) |
| C3—C4—H4A | 108.9 | C14—C15'—C16' | 122.5 (3) |
| C5—C4—H4B | 108.9 | C14—C15'—H15' | 118.8 |
| C3—C4—H4B | 108.9 | C16'—C15'—H15' | 118.8 |
| H4A—C4—H4B | 107.7 | C17'—C16'—C15' | 101.3 (5) |
| C6—C5—C18 | 120.87 (8) | C17'—C16'—H16' | 129.4 |
| C6—C5—C4 | 120.24 (7) | C15'—C16'—H16' | 129.4 |
| C18—C5—C4 | 118.84 (7) | C16'—C17'—S1' | 120.4 (5) |
| C5—C6—C1 | 123.73 (8) | C16'—C17'—H17' | 119.8 |
| C5—C6—H6 | 118.1 | S1'—C17'—H17' | 119.8 |
| C1—C6—H6 | 118.1 | C23—C18—C19 | 118.45 (8) |
| O2—C7—N1 | 124.39 (8) | C23—C18—C5 | 120.60 (8) |
| O2—C7—C2 | 121.41 (7) | C19—C18—C5 | 120.93 (7) |
| N1—C7—C2 | 114.20 (7) | C20—C19—C18 | 120.78 (8) |
| C9—C8—C13 | 119.43 (8) | C20—C19—H19 | 119.6 |
| C9—C8—N1 | 124.32 (8) | C18—C19—H19 | 119.6 |
| C13—C8—N1 | 116.20 (8) | C19—C20—C21 | 119.17 (9) |
| C8—C9—C10 | 119.30 (9) | C19—C20—H20 | 120.4 |
| C8—C9—H9 | 120.3 | C21—C20—H20 | 120.4 |
| C10—C9—H9 | 120.3 | C22—C21—C20 | 121.71 (8) |
| C11—C10—C9 | 121.32 (10) | C22—C21—Cl1 | 119.59 (7) |
| C11—C10—H10 | 119.3 | C20—C21—Cl1 | 118.69 (7) |
| C9—C10—H10 | 119.3 | C21—C22—C23 | 118.61 (8) |
| C12—C11—C10 | 119.00 (9) | C21—C22—H22 | 120.7 |
| C12—C11—H11 | 120.5 | C23—C22—H22 | 120.7 |
| C10—C11—H11 | 120.5 | C22—C23—C18 | 121.24 (8) |
| C11—C12—C13 | 120.61 (10) | C22—C23—H23 | 119.4 |
| C11—C12—H12 | 119.7 | C18—C23—H23 | 119.4 |
| C13—C12—H12 | 119.7 | C7—N1—C8 | 128.77 (7) |
| C12—C13—C8 | 120.33 (10) | C7—N1—H1 | 116.0 (9) |
| C12—C13—H13 | 119.8 | C8—N1—H1 | 115.2 (9) |
| C8—C13—H13 | 119.8 | HW1A—OW1—HW1B | 107.1 (14) |
| O1—C1—C2—C7 | 28.70 (11) | C4—C3—C14—S1' | −88.62 (9) |
| C6—C1—C2—C7 | −154.57 (8) | C2—C3—C14—S1' | 147.93 (7) |
| O1—C1—C2—C3 | 153.36 (8) | C15—C14—S1—C17 | −2.6 (3) |
| C6—C1—C2—C3 | −29.90 (11) | C3—C14—S1—C17 | −178.3 (3) |
| C1—C2—C3—C14 | 176.17 (7) | C3—C14—C15—C16 | 172.9 (4) |
| C7—C2—C3—C14 | −60.58 (9) | S1—C14—C15—C16 | −2.4 (5) |
| C1—C2—C3—C4 | 53.12 (9) | C14—C15—C16—C17 | 7.4 (7) |
| C7—C2—C3—C4 | 176.37 (7) | C15—C16—C17—S1 | −9.5 (7) |
| C14—C3—C4—C5 | −174.95 (7) | C14—S1—C17—C16 | 7.9 (6) |
| C2—C3—C4—C5 | −50.26 (9) | C15'—C14—S1'—C17' | 0.2 (3) |
| C3—C4—C5—C6 | 22.67 (11) | C3—C14—S1'—C17' | 174.9 (2) |
| C3—C4—C5—C18 | −159.71 (7) | C3—C14—C15'—C16' | −169.1 (4) |
| C18—C5—C6—C1 | −175.02 (8) | S1'—C14—C15'—C16' | 4.8 (5) |
| C4—C5—C6—C1 | 2.54 (14) | C14—C15'—C16'—C17' | −8.1 (7) |
| O1—C1—C6—C5 | 178.22 (9) | C15'—C16'—C17'—S1' | 8.0 (7) |
| C2—C1—C6—C5 | 1.51 (14) | C14—S1'—C17'—C16' | −5.4 (6) |
| C1—C2—C7—O2 | 80.63 (10) | C6—C5—C18—C23 | 159.74 (9) |
| C3—C2—C7—O2 | −43.22 (11) | C4—C5—C18—C23 | −17.86 (12) |
| C1—C2—C7—N1 | −99.20 (8) | C6—C5—C18—C19 | −18.63 (13) |
| C3—C2—C7—N1 | 136.95 (7) | C4—C5—C18—C19 | 163.77 (8) |
| C13—C8—C9—C10 | −0.70 (14) | C23—C18—C19—C20 | −2.01 (13) |
| N1—C8—C9—C10 | 176.37 (9) | C5—C18—C19—C20 | 176.40 (8) |
| C8—C9—C10—C11 | −0.47 (15) | C18—C19—C20—C21 | 0.37 (13) |
| C9—C10—C11—C12 | 1.06 (16) | C19—C20—C21—C22 | 1.40 (13) |
| C10—C11—C12—C13 | −0.49 (16) | C19—C20—C21—Cl1 | −179.90 (7) |
| C11—C12—C13—C8 | −0.67 (16) | C20—C21—C22—C23 | −1.44 (13) |
| C9—C8—C13—C12 | 1.27 (14) | Cl1—C21—C22—C23 | 179.87 (7) |
| N1—C8—C13—C12 | −176.04 (9) | C21—C22—C23—C18 | −0.28 (13) |
| C4—C3—C14—C15 | −96.7 (3) | C19—C18—C23—C22 | 1.97 (13) |
| C2—C3—C14—C15 | 139.8 (3) | C5—C18—C23—C22 | −176.44 (8) |
| C4—C3—C14—C15' | 84.6 (3) | O2—C7—N1—C8 | 3.06 (14) |
| C2—C3—C14—C15' | −38.9 (3) | C2—C7—N1—C8 | −177.12 (8) |
| C4—C3—C14—S1 | 77.99 (10) | C9—C8—N1—C7 | 8.68 (14) |
| C2—C3—C14—S1 | −45.46 (11) | C13—C8—N1—C7 | −174.16 (9) |
| Cg1 is the centroid of the major component of the disordered thiophene ring (S1/C14–C17). |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···Ow1i | 0.881 (14) | 1.953 (14) | 2.8317 (10) | 175.2 (12) |
| Ow1—Hw1A···O2 | 0.84 (2) | 1.93 (2) | 2.7681 (9) | 171 (2) |
| Ow1—Hw1B···Cl1ii | 0.83 (2) | 2.81 (2) | 3.0653 (7) | 100 (1) |
| Ow1—Hw1B···O1iii | 0.83 (2) | 2.07 (2) | 2.8908 (9) | 172 (2) |
| C2—H2···S1 | 1.00 | 2.80 | 3.1912 (15) | 104 |
| C2—H2···Ow1i | 1.00 | 2.50 | 3.3269 (10) | 139 |
| C9—H9···O2 | 0.95 | 2.32 | 2.9124 (11) | 120 |
| C16—H16···O2iv | 0.95 | 2.55 | 3.423 (6) | 152 |
| C17′—H17′···O2iv | 0.95 | 2.58 | 3.511 (5) | 166 |
| C11—H11···Cg1v | 0.95 | 2.91 | 3.801 (2) | 158 |
| C11—H11···Cg2v | 0.95 | 2.86 | 3.757 (2) | 158 |
| Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+2, −z+1; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+1, −z+2; (v) x, y−1, z. |
| Contact | Distance | Symmetry operation |
| H23···C12 | 2.99 | x, 1 + y, z |
| Cl1···Hw1B | 2.81 | 1 - x, 2 - y, 1 - z |
| H3···Cl1 | 2.83 | 1 - x, 2 - y, 1 - z |
| H4A···Cl1 | 2.88 | -x, 2 - y, 1 - z |
| *H16'···C8 | 2.89 | -x, 1 - y, 2 - z |
| *H16···H9 | 2.48 | 1 - x, 1 - y, 2 - z |
| O1···Hw1B | 2.07 | 1 - x, 1 - y, 1 - z |
| O2···Hw1A | 1.93 | x, y, z |
| H19···O2 | 2.75 | 1 - x, 1 - y, 1 - z |
| H1···Ow1 | 1.95 | -1 + x, y, z |
| The prefix * indicates a disordered atom. |
Acknowledgements
Authors' contributions are as follows. Conceptualization, FNN and IGM; methodology, FNN and IGM; investigation, JMA, MA and HAH; writing (original draft), MA and FNN; writing (review and editing of the manuscript), MA and FNN; visualization, MA, EYN and IGM; funding acquisition, VNK, HAH and FNN; resources, EYN, VNK, JMA and FNN; supervision, İGM and MA.
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