 | Acta Crystallographica Section F Acta Crystallographica Section F STRUCTURAL BIOLOGY COMMUNICATIONS |
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![[Figure 3]](ow5027fig3mag.jpg)
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Figure 3
Structural comparison of loop regions at the top of the Vap β-barrel. An all-against-all analysis was performed with the DALI server (Holm, 2020  ) for truncated Vap structures, in which flexible (N- and C-termini) or variable (β2–β3 loop) residues had been removed. These six truncated Vap structures correspond to VapB residues 89–108 and 113–192. (a) Heat map of pairwise Z-scores. The bar on the right assigns colours to Z-scores. The pairwise root-mean-square distances (r.m.s.d.s) are given in Supplementary Table S1. (b) VapD and the open VapB structure appear as outliers in correspondence analysis, a multidimensional scaling method that positions data points with the most similar structural neighbourhoods near each other. The horizontal and vertical axes represent the first and the second eigenvector, respectively. |
![[Figure 3]](ow5027fig3.jpg)
| STRUCTURAL BIOLOGY COMMUNICATIONS |
ISSN: 2053-230X
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