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Figure 5
Cavities in Vap structures. All Vaps were structurally aligned. The cartoon representation is coloured blue to red from the N-terminus to the C-terminus. The setting `Cavities and Pockets Only' in the surface representation of PyMOL was used to display completely enclosed and surface-accessible cavities as a transparent grey surface. Water molecules located completely or partially within these pockets are shown as red spheres. Only chain A of the new VapB structure (PDB entry 7b1z chain A) has a large, water-filled pocket between the β3–β4 loop and the β7–β8 loop.

Journal logoSTRUCTURAL BIOLOGY
COMMUNICATIONS
ISSN: 2053-230X
Volume 77| Part 8| August 2021| Pages 246-253
https://doi.org/10.1107/S2053230X2100738X
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