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Molecules of eletriptan hydrobromide monohydrate (systematic name: (1S,2R)-1-methyl-2-{5-[2-(phenylsulfonyl)ethyl]-1H-indol-3-ylmethyl}pyrrolidinium bromide monohydrate), C22H27N2O2S+·Br-·H2O, (I), and naratriptan hydrochloride (systematic name: 1-methyl-4-{5-[2-(methylsulfamoyl)ethyl]-1H-indol-3-yl}piperidinium chloride), C17H26N3O2S+·Cl-, (II), adopt conformations similar to other triptans. The C-2 and C-5 substituents of the indole ring, both of which are in a region of conformational flexibility, are found to be oriented on either side of the indole ring plane in (I), whilst they are on the same side in (II). The N atom in the C-2 side chain is protonated in both structures and is involved in the hydrogen-bonding networks. In (I), the water molecules create helical hydrogen-bonded chains along the c axis. In (II), the hydrogen bonding of the chloride ions results in macrocyclic R42(20) and R42(24) ring motifs that form sheets in the bc plane. This structural analysis provides an insight into the molecular structure-activity relationships within this class of compound, which is of use for drug development.
Supporting information
CCDC references: 718149; 718150
Crystals of eletriptan hydrobromide monohydrate and naratriptan hydrochloride
(SMS Pharma Research Centre, Hyderabad) suitable for X-ray diffraction were
obtained from solutions in a mixture of methanol and water [Solvent
ratio?] by the method of slow evaporation.
All N-bound and O-bound H atoms of both (I) and (II) were located in a
difference density map and refined isotropically. All other H atoms were
positioned geometrically and were treated as riding on their parent C atoms,
with C—H = 0.93–0.98 Å, and with Uiso(H) = 1.5Ueq(C)
for methyl H and 1.2Ueq(C) for other H atoms. The methyl groups were
allowed to rotate but not to tip. The absolute configuration of the procured
material was known in advance and was confirmed by unambiguous refinement of
the absolute structure parameter (Flack & Bernardinelli, 2000).
For both compounds, data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
(I) (1S,2R)-1-methyl-2-{5-[2-(phenylsulfonyl)ethyl]-1
H-indol-3-
ylmethyl}pyrrolidinium bromide monohydrate
top
Crystal data top
C22H27N2O2S+·Br−·H2O | F(000) = 1000 |
Mr = 481.44 | Dx = 1.408 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 6588 reflections |
a = 9.4019 (6) Å | θ = 2.4–27.1° |
b = 13.4089 (8) Å | µ = 1.93 mm−1 |
c = 18.0173 (11) Å | T = 294 K |
V = 2271.4 (2) Å3 | Block, colourless |
Z = 4 | 0.16 × 0.12 × 0.07 mm |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 3984 independent reflections |
Radiation source: fine-focus sealed tube | 3761 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.066 |
ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −11→11 |
Tmin = 0.75, Tmax = 0.86 | k = −15→15 |
21861 measured reflections | l = −21→21 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.024 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0416P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
3984 reflections | Δρmax = 0.36 e Å−3 |
279 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Absolute structure: Flack & Bernardinelli (2000), with how many Friedel pairs? |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.007 (5) |
Crystal data top
C22H27N2O2S+·Br−·H2O | V = 2271.4 (2) Å3 |
Mr = 481.44 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.4019 (6) Å | µ = 1.93 mm−1 |
b = 13.4089 (8) Å | T = 294 K |
c = 18.0173 (11) Å | 0.16 × 0.12 × 0.07 mm |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 3984 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3761 reflections with I > 2σ(I) |
Tmin = 0.75, Tmax = 0.86 | Rint = 0.066 |
21861 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.024 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | Δρmax = 0.36 e Å−3 |
S = 1.06 | Δρmin = −0.25 e Å−3 |
3984 reflections | Absolute structure: Flack & Bernardinelli (2000), with how many Friedel pairs? |
279 parameters | Absolute structure parameter: −0.007 (5) |
0 restraints | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.7115 (3) | 0.75178 (16) | 0.51628 (11) | 0.0462 (5) | |
H1 | 0.7705 | 0.8022 | 0.5339 | 0.055* | |
C2 | 0.6300 (2) | 0.69147 (14) | 0.55980 (11) | 0.0397 (4) | |
C3 | 0.5553 (2) | 0.62645 (13) | 0.50994 (11) | 0.0371 (4) | |
C4 | 0.4560 (2) | 0.54997 (14) | 0.52014 (11) | 0.0388 (4) | |
H4 | 0.4281 | 0.5317 | 0.5678 | 0.047* | |
C5 | 0.3992 (2) | 0.50151 (14) | 0.45886 (12) | 0.0422 (5) | |
C6 | 0.4469 (3) | 0.52790 (16) | 0.38693 (12) | 0.0494 (5) | |
H6 | 0.4099 | 0.4944 | 0.3461 | 0.059* | |
C7 | 0.5461 (3) | 0.60153 (16) | 0.37568 (11) | 0.0485 (5) | |
H7 | 0.5768 | 0.6177 | 0.3281 | 0.058* | |
C8 | 0.5993 (2) | 0.65118 (14) | 0.43741 (11) | 0.0407 (4) | |
C9 | 0.6250 (3) | 0.68641 (15) | 0.64310 (12) | 0.0474 (5) | |
H9A | 0.6859 | 0.6325 | 0.6599 | 0.057* | |
H9B | 0.5286 | 0.6713 | 0.6586 | 0.057* | |
C10 | 0.6721 (3) | 0.78258 (17) | 0.67974 (12) | 0.0517 (5) | |
H10 | 0.7591 | 0.8059 | 0.6552 | 0.062* | |
C11 | 0.5627 (4) | 0.8667 (2) | 0.67850 (17) | 0.0783 (8) | |
H11A | 0.4752 | 0.8446 | 0.6553 | 0.094* | |
H11B | 0.5991 | 0.9237 | 0.6513 | 0.094* | |
C12 | 0.5369 (4) | 0.8941 (2) | 0.75973 (16) | 0.0841 (10) | |
H12A | 0.5234 | 0.9654 | 0.7653 | 0.101* | |
H12B | 0.4538 | 0.8599 | 0.7789 | 0.101* | |
C13 | 0.6687 (4) | 0.8604 (2) | 0.79898 (15) | 0.0791 (9) | |
H13A | 0.7447 | 0.9087 | 0.7934 | 0.095* | |
H13B | 0.6508 | 0.8497 | 0.8514 | 0.095* | |
C14 | 0.8507 (3) | 0.7292 (3) | 0.77544 (17) | 0.0925 (11) | |
H14A | 0.9182 | 0.7751 | 0.7547 | 0.139* | |
H14B | 0.8625 | 0.6649 | 0.7528 | 0.139* | |
H14C | 0.8660 | 0.7237 | 0.8280 | 0.139* | |
C15 | 0.2883 (2) | 0.42176 (14) | 0.46794 (13) | 0.0458 (5) | |
H15A | 0.2054 | 0.4386 | 0.4385 | 0.055* | |
H15B | 0.2594 | 0.4183 | 0.5196 | 0.055* | |
C16 | 0.3456 (2) | 0.32015 (14) | 0.44345 (12) | 0.0412 (4) | |
H16A | 0.4385 | 0.3094 | 0.4655 | 0.049* | |
H16B | 0.3568 | 0.3197 | 0.3899 | 0.049* | |
C17 | 0.3211 (2) | 0.11320 (15) | 0.44297 (11) | 0.0410 (4) | |
C18 | 0.3585 (3) | 0.04389 (17) | 0.49625 (14) | 0.0547 (6) | |
H18 | 0.3348 | 0.0535 | 0.5459 | 0.066* | |
C19 | 0.4327 (3) | −0.04101 (18) | 0.47362 (17) | 0.0679 (7) | |
H19 | 0.4575 | −0.0895 | 0.5082 | 0.081* | |
C20 | 0.4691 (3) | −0.05295 (17) | 0.40044 (17) | 0.0701 (8) | |
H20 | 0.5200 | −0.1091 | 0.3859 | 0.084* | |
C21 | 0.4316 (3) | 0.01650 (19) | 0.34864 (16) | 0.0683 (7) | |
H21 | 0.4578 | 0.0072 | 0.2993 | 0.082* | |
C22 | 0.3556 (3) | 0.09999 (16) | 0.36842 (13) | 0.0542 (6) | |
H22 | 0.3280 | 0.1465 | 0.3329 | 0.065* | |
N1 | 0.6947 (2) | 0.72792 (14) | 0.44290 (10) | 0.0482 (5) | |
H1N | 0.720 (2) | 0.7617 (15) | 0.4086 (12) | 0.039 (6)* | |
N2 | 0.7039 (2) | 0.76611 (17) | 0.76130 (11) | 0.0543 (5) | |
H2N | 0.644 (3) | 0.7245 (19) | 0.7712 (14) | 0.049 (7)* | |
S1 | 0.23056 (6) | 0.22216 (3) | 0.46994 (3) | 0.04000 (12) | |
O1 | 0.10076 (16) | 0.22946 (11) | 0.42758 (9) | 0.0522 (4) | |
O2 | 0.2173 (2) | 0.22161 (12) | 0.54933 (8) | 0.0598 (4) | |
Br1 | 0.73101 (3) | 0.83875 (2) | 0.269612 (12) | 0.06036 (10) | |
O1W | 0.5203 (2) | 0.63364 (14) | 0.82638 (13) | 0.0600 (5) | |
H1W | 0.454 (4) | 0.639 (2) | 0.8011 (19) | 0.083 (12)* | |
H2W | 0.494 (4) | 0.663 (2) | 0.861 (2) | 0.087 (12)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0510 (12) | 0.0479 (11) | 0.0396 (11) | −0.0102 (9) | 0.0005 (10) | 0.0010 (9) |
C2 | 0.0429 (11) | 0.0422 (10) | 0.0340 (10) | −0.0021 (8) | 0.0005 (9) | −0.0001 (8) |
C3 | 0.0396 (10) | 0.0357 (9) | 0.0360 (10) | 0.0029 (8) | −0.0004 (8) | 0.0025 (8) |
C4 | 0.0429 (11) | 0.0393 (10) | 0.0341 (10) | 0.0017 (8) | 0.0015 (9) | 0.0017 (8) |
C5 | 0.0433 (11) | 0.0385 (10) | 0.0449 (12) | 0.0034 (9) | −0.0030 (9) | −0.0010 (9) |
C6 | 0.0593 (14) | 0.0495 (11) | 0.0393 (12) | −0.0004 (10) | −0.0092 (10) | −0.0060 (9) |
C7 | 0.0612 (13) | 0.0518 (12) | 0.0326 (11) | 0.0027 (11) | 0.0004 (10) | 0.0028 (9) |
C8 | 0.0452 (11) | 0.0403 (10) | 0.0367 (11) | 0.0021 (9) | 0.0012 (8) | 0.0035 (9) |
C9 | 0.0501 (12) | 0.0531 (12) | 0.0390 (11) | −0.0088 (10) | 0.0014 (9) | 0.0012 (9) |
C10 | 0.0583 (13) | 0.0647 (13) | 0.0322 (11) | −0.0175 (12) | 0.0021 (10) | −0.0017 (10) |
C11 | 0.109 (2) | 0.0614 (15) | 0.0644 (17) | 0.0016 (16) | −0.0042 (17) | −0.0035 (13) |
C12 | 0.128 (3) | 0.0530 (14) | 0.0713 (19) | 0.0089 (16) | 0.027 (2) | −0.0010 (14) |
C13 | 0.122 (3) | 0.0697 (16) | 0.0460 (14) | −0.0244 (17) | 0.0039 (16) | −0.0135 (12) |
C14 | 0.0512 (16) | 0.176 (3) | 0.0505 (16) | −0.0029 (19) | −0.0087 (13) | −0.0027 (19) |
C15 | 0.0409 (11) | 0.0454 (11) | 0.0511 (12) | −0.0010 (9) | −0.0010 (10) | −0.0061 (9) |
C16 | 0.0353 (10) | 0.0434 (11) | 0.0448 (12) | −0.0026 (9) | −0.0006 (8) | 0.0007 (8) |
C17 | 0.0393 (11) | 0.0423 (10) | 0.0415 (11) | −0.0041 (8) | 0.0011 (9) | 0.0005 (9) |
C18 | 0.0608 (15) | 0.0509 (12) | 0.0524 (14) | −0.0057 (11) | −0.0078 (12) | 0.0055 (10) |
C19 | 0.0728 (17) | 0.0473 (13) | 0.083 (2) | 0.0039 (12) | −0.0138 (15) | 0.0120 (13) |
C20 | 0.0679 (17) | 0.0519 (14) | 0.090 (2) | 0.0083 (12) | 0.0085 (15) | −0.0053 (14) |
C21 | 0.0816 (19) | 0.0587 (14) | 0.0645 (17) | 0.0029 (14) | 0.0239 (15) | −0.0061 (13) |
C22 | 0.0683 (15) | 0.0461 (12) | 0.0481 (13) | 0.0009 (12) | 0.0077 (12) | 0.0029 (10) |
N1 | 0.0569 (12) | 0.0495 (10) | 0.0383 (10) | −0.0093 (9) | 0.0045 (8) | 0.0079 (8) |
N2 | 0.0526 (11) | 0.0731 (13) | 0.0371 (10) | −0.0191 (10) | 0.0035 (9) | −0.0035 (9) |
S1 | 0.0387 (3) | 0.0444 (2) | 0.0369 (2) | −0.0026 (2) | 0.0023 (2) | 0.00044 (19) |
O1 | 0.0362 (8) | 0.0609 (9) | 0.0597 (9) | −0.0026 (7) | −0.0047 (7) | 0.0012 (7) |
O2 | 0.0786 (12) | 0.0636 (9) | 0.0373 (8) | −0.0024 (9) | 0.0105 (8) | −0.0009 (7) |
Br1 | 0.05458 (15) | 0.08405 (18) | 0.04246 (13) | 0.00331 (12) | 0.00418 (10) | 0.00765 (10) |
O1W | 0.0602 (12) | 0.0659 (11) | 0.0538 (11) | −0.0052 (9) | −0.0015 (10) | −0.0001 (9) |
Geometric parameters (Å, º) top
C1—C2 | 1.362 (3) | C13—H13B | 0.9700 |
C1—N1 | 1.369 (3) | C14—N2 | 1.488 (4) |
C1—H1 | 0.9300 | C14—H14A | 0.9600 |
C2—C3 | 1.436 (3) | C14—H14B | 0.9600 |
C2—C9 | 1.503 (3) | C14—H14C | 0.9600 |
C3—C4 | 1.399 (3) | C15—C16 | 1.530 (3) |
C3—C8 | 1.410 (3) | C15—H15A | 0.9700 |
C4—C5 | 1.388 (3) | C15—H15B | 0.9700 |
C4—H4 | 0.9300 | C16—S1 | 1.7674 (19) |
C5—C6 | 1.416 (3) | C16—H16A | 0.9700 |
C5—C15 | 1.503 (3) | C16—H16B | 0.9700 |
C6—C7 | 1.373 (3) | C17—C18 | 1.381 (3) |
C6—H6 | 0.9300 | C17—C22 | 1.393 (3) |
C7—C8 | 1.389 (3) | C17—S1 | 1.759 (2) |
C7—H7 | 0.9300 | C18—C19 | 1.396 (4) |
C8—N1 | 1.369 (3) | C18—H18 | 0.9300 |
C9—C10 | 1.515 (3) | C19—C20 | 1.372 (4) |
C9—H9A | 0.9700 | C19—H19 | 0.9300 |
C9—H9B | 0.9700 | C20—C21 | 1.365 (4) |
C10—N2 | 1.516 (3) | C20—H20 | 0.9300 |
C10—C11 | 1.527 (4) | C21—C22 | 1.375 (3) |
C10—H10 | 0.9800 | C21—H21 | 0.9300 |
C11—C12 | 1.528 (4) | C22—H22 | 0.9300 |
C11—H11A | 0.9700 | N1—H1N | 0.80 (2) |
C11—H11B | 0.9700 | N2—H2N | 0.81 (3) |
C12—C13 | 1.496 (5) | S1—O2 | 1.4358 (15) |
C12—H12A | 0.9700 | S1—O1 | 1.4427 (16) |
C12—H12B | 0.9700 | O1W—H1W | 0.78 (4) |
C13—N2 | 1.473 (3) | O1W—H2W | 0.78 (4) |
C13—H13A | 0.9700 | | |
| | | |
C2—C1—N1 | 110.60 (19) | H13A—C13—H13B | 109.1 |
C2—C1—H1 | 124.7 | N2—C14—H14A | 109.5 |
N1—C1—H1 | 124.7 | N2—C14—H14B | 109.5 |
C1—C2—C3 | 106.01 (18) | H14A—C14—H14B | 109.5 |
C1—C2—C9 | 128.25 (19) | N2—C14—H14C | 109.5 |
C3—C2—C9 | 125.59 (18) | H14A—C14—H14C | 109.5 |
C4—C3—C8 | 119.34 (18) | H14B—C14—H14C | 109.5 |
C4—C3—C2 | 133.61 (19) | C5—C15—C16 | 110.99 (17) |
C8—C3—C2 | 107.06 (17) | C5—C15—H15A | 109.4 |
C5—C4—C3 | 119.7 (2) | C16—C15—H15A | 109.4 |
C5—C4—H4 | 120.2 | C5—C15—H15B | 109.4 |
C3—C4—H4 | 120.2 | C16—C15—H15B | 109.4 |
C4—C5—C6 | 119.3 (2) | H15A—C15—H15B | 108.0 |
C4—C5—C15 | 120.9 (2) | C15—C16—S1 | 111.65 (14) |
C6—C5—C15 | 119.81 (19) | C15—C16—H16A | 109.3 |
C7—C6—C5 | 122.0 (2) | S1—C16—H16A | 109.3 |
C7—C6—H6 | 119.0 | C15—C16—H16B | 109.3 |
C5—C6—H6 | 119.0 | S1—C16—H16B | 109.3 |
C6—C7—C8 | 118.1 (2) | H16A—C16—H16B | 108.0 |
C6—C7—H7 | 121.0 | C18—C17—C22 | 121.7 (2) |
C8—C7—H7 | 121.0 | C18—C17—S1 | 119.31 (18) |
N1—C8—C7 | 130.84 (19) | C22—C17—S1 | 118.98 (16) |
N1—C8—C3 | 107.58 (17) | C17—C18—C19 | 118.2 (2) |
C7—C8—C3 | 121.58 (19) | C17—C18—H18 | 120.9 |
C2—C9—C10 | 112.80 (17) | C19—C18—H18 | 120.9 |
C2—C9—H9A | 109.0 | C20—C19—C18 | 120.0 (2) |
C10—C9—H9A | 109.0 | C20—C19—H19 | 120.0 |
C2—C9—H9B | 109.0 | C18—C19—H19 | 120.0 |
C10—C9—H9B | 109.0 | C21—C20—C19 | 120.9 (2) |
H9A—C9—H9B | 107.8 | C21—C20—H20 | 119.6 |
C9—C10—N2 | 110.86 (18) | C19—C20—H20 | 119.6 |
C9—C10—C11 | 115.2 (2) | C20—C21—C22 | 120.8 (2) |
N2—C10—C11 | 104.73 (19) | C20—C21—H21 | 119.6 |
C9—C10—H10 | 108.6 | C22—C21—H21 | 119.6 |
N2—C10—H10 | 108.6 | C21—C22—C17 | 118.3 (2) |
C11—C10—H10 | 108.6 | C21—C22—H22 | 120.8 |
C10—C11—C12 | 105.7 (2) | C17—C22—H22 | 120.8 |
C10—C11—H11A | 110.6 | C8—N1—C1 | 108.75 (17) |
C12—C11—H11A | 110.6 | C8—N1—H1N | 124.4 (16) |
C10—C11—H11B | 110.6 | C1—N1—H1N | 125.2 (15) |
C12—C11—H11B | 110.6 | C13—N2—C14 | 114.5 (3) |
H11A—C11—H11B | 108.7 | C13—N2—C10 | 106.1 (2) |
C13—C12—C11 | 104.4 (3) | C14—N2—C10 | 113.4 (2) |
C13—C12—H12A | 110.9 | C13—N2—H2N | 109.6 (17) |
C11—C12—H12A | 110.9 | C14—N2—H2N | 112.0 (17) |
C13—C12—H12B | 110.9 | C10—N2—H2N | 100.2 (18) |
C11—C12—H12B | 110.9 | O2—S1—O1 | 116.99 (11) |
H12A—C12—H12B | 108.9 | O2—S1—C17 | 108.23 (10) |
N2—C13—C12 | 103.1 (2) | O1—S1—C17 | 108.64 (10) |
N2—C13—H13A | 111.1 | O2—S1—C16 | 109.02 (10) |
C12—C13—H13A | 111.1 | O1—S1—C16 | 108.92 (10) |
N2—C13—H13B | 111.1 | C17—S1—C16 | 104.28 (9) |
C12—C13—H13B | 111.1 | H1W—O1W—H2W | 99 (3) |
| | | |
N1—C1—C2—C3 | −1.0 (3) | C6—C5—C15—C16 | 65.9 (3) |
N1—C1—C2—C9 | 174.7 (2) | C5—C15—C16—S1 | 168.71 (15) |
C1—C2—C3—C4 | −179.2 (2) | C22—C17—C18—C19 | 0.0 (3) |
C9—C2—C3—C4 | 5.0 (4) | S1—C17—C18—C19 | −178.76 (19) |
C1—C2—C3—C8 | 1.0 (2) | C17—C18—C19—C20 | 1.3 (4) |
C9—C2—C3—C8 | −174.9 (2) | C18—C19—C20—C21 | −1.1 (4) |
C8—C3—C4—C5 | −1.8 (3) | C19—C20—C21—C22 | −0.4 (5) |
C2—C3—C4—C5 | 178.3 (2) | C20—C21—C22—C17 | 1.7 (4) |
C3—C4—C5—C6 | 2.3 (3) | C18—C17—C22—C21 | −1.5 (4) |
C3—C4—C5—C15 | −177.66 (18) | S1—C17—C22—C21 | 177.3 (2) |
C4—C5—C6—C7 | −1.2 (3) | C7—C8—N1—C1 | 179.3 (2) |
C15—C5—C6—C7 | 178.8 (2) | C3—C8—N1—C1 | 0.0 (2) |
C5—C6—C7—C8 | −0.4 (3) | C2—C1—N1—C8 | 0.6 (3) |
C6—C7—C8—N1 | −178.3 (2) | C12—C13—N2—C14 | 164.8 (2) |
C6—C7—C8—C3 | 1.0 (3) | C12—C13—N2—C10 | 38.9 (3) |
C4—C3—C8—N1 | 179.53 (18) | C9—C10—N2—C13 | −148.7 (2) |
C2—C3—C8—N1 | −0.6 (2) | C11—C10—N2—C13 | −23.9 (3) |
C4—C3—C8—C7 | 0.2 (3) | C9—C10—N2—C14 | 84.7 (3) |
C2—C3—C8—C7 | −179.97 (19) | C11—C10—N2—C14 | −150.4 (3) |
C1—C2—C9—C10 | 24.5 (3) | C18—C17—S1—O2 | 3.2 (2) |
C3—C2—C9—C10 | −160.6 (2) | C22—C17—S1—O2 | −175.67 (18) |
C2—C9—C10—N2 | −164.60 (19) | C18—C17—S1—O1 | −124.82 (18) |
C2—C9—C10—C11 | 76.7 (3) | C22—C17—S1—O1 | 56.3 (2) |
C9—C10—C11—C12 | 121.9 (3) | C18—C17—S1—C16 | 119.14 (19) |
N2—C10—C11—C12 | −0.2 (3) | C22—C17—S1—C16 | −59.7 (2) |
C10—C11—C12—C13 | 23.6 (3) | C15—C16—S1—O2 | −60.44 (18) |
C11—C12—C13—N2 | −38.4 (3) | C15—C16—S1—O1 | 68.29 (17) |
C4—C5—C15—C16 | −114.1 (2) | C15—C16—S1—C17 | −175.86 (15) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···Br1 | 0.80 (2) | 2.71 (2) | 3.4747 (19) | 159 (2) |
N2—H2N···O1W | 0.81 (3) | 1.96 (3) | 2.740 (3) | 162 (2) |
O1W—H1W···Br1i | 0.78 (4) | 2.47 (4) | 3.244 (2) | 175 (3) |
O1W—H2W···O1ii | 0.78 (4) | 2.08 (4) | 2.827 (3) | 162 (3) |
Symmetry codes: (i) x−1/2, −y+3/2, −z+1; (ii) −x+1/2, −y+1, z+1/2. |
(II) 1-methyl-4-{5-[2-(methylsulfamoyl)ethyl]-1
H-indol-3-yl}piperidinium
chloride
top
Crystal data top
C17H26N3O2S+·Cl− | Z = 2 |
Mr = 371.92 | F(000) = 396 |
Triclinic, P1 | Dx = 1.319 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.1914 (5) Å | Cell parameters from 5193 reflections |
b = 12.2298 (10) Å | θ = 2.6–28.0° |
c = 12.9948 (11) Å | µ = 0.33 mm−1 |
α = 78.348 (1)° | T = 294 K |
β = 76.338 (1)° | Block, colourless |
γ = 86.033 (1)° | 0.18 × 0.15 × 0.08 mm |
V = 936.18 (13) Å3 | |
Data collection top
Burker SMART APEX CCD area-detector diffractometer | 3006 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.018 |
Graphite monochromator | θmax = 25.0°, θmin = 1.6° |
ω scans | h = −7→7 |
9097 measured reflections | k = −14→14 |
3301 independent reflections | l = −15→15 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0486P)2 + 0.3147P] where P = (Fo2 + 2Fc2)/3 |
3301 reflections | (Δ/σ)max = 0.001 |
231 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
Crystal data top
C17H26N3O2S+·Cl− | γ = 86.033 (1)° |
Mr = 371.92 | V = 936.18 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.1914 (5) Å | Mo Kα radiation |
b = 12.2298 (10) Å | µ = 0.33 mm−1 |
c = 12.9948 (11) Å | T = 294 K |
α = 78.348 (1)° | 0.18 × 0.15 × 0.08 mm |
β = 76.338 (1)° | |
Data collection top
Burker SMART APEX CCD area-detector diffractometer | 3006 reflections with I > 2σ(I) |
9097 measured reflections | Rint = 0.018 |
3301 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.24 e Å−3 |
3301 reflections | Δρmin = −0.34 e Å−3 |
231 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | 0.5449 (3) | 0.98809 (16) | 0.65005 (17) | 0.0562 (5) | |
H1 | 0.6528 | 1.0189 | 0.5901 | 0.067* | |
C2 | 0.5646 (3) | 0.88617 (14) | 0.71365 (14) | 0.0441 (4) | |
C3 | 0.3612 (3) | 0.87256 (14) | 0.79556 (14) | 0.0418 (4) | |
C4 | 0.2735 (3) | 0.78710 (14) | 0.88254 (13) | 0.0422 (4) | |
H4 | 0.3556 | 0.7214 | 0.8966 | 0.051* | |
C5 | 0.0654 (3) | 0.80058 (16) | 0.94706 (14) | 0.0460 (4) | |
C6 | −0.0569 (3) | 0.90060 (17) | 0.92507 (16) | 0.0543 (5) | |
H6 | −0.1959 | 0.9094 | 0.9696 | 0.065* | |
C7 | 0.0218 (3) | 0.98533 (16) | 0.84045 (17) | 0.0553 (5) | |
H7 | −0.0617 | 1.0506 | 0.8268 | 0.066* | |
C8 | 0.2305 (3) | 0.97032 (14) | 0.77583 (15) | 0.0483 (4) | |
C9 | 0.7580 (3) | 0.80530 (14) | 0.70112 (14) | 0.0420 (4) | |
H9 | 0.8091 | 0.7900 | 0.7686 | 0.050* | |
C10 | 0.9532 (3) | 0.85169 (14) | 0.60995 (15) | 0.0473 (4) | |
H10A | 0.9037 | 0.8719 | 0.5430 | 0.057* | |
H10B | 1.0040 | 0.9188 | 0.6250 | 0.057* | |
C11 | 1.1431 (3) | 0.76844 (15) | 0.59688 (16) | 0.0500 (4) | |
H11A | 1.2626 | 0.8001 | 0.5376 | 0.060* | |
H11B | 1.1995 | 0.7517 | 0.6621 | 0.060* | |
C12 | 0.8864 (3) | 0.61234 (15) | 0.66696 (15) | 0.0464 (4) | |
H12A | 0.9404 | 0.5932 | 0.7328 | 0.056* | |
H12B | 0.8386 | 0.5445 | 0.6520 | 0.056* | |
C13 | 0.6933 (3) | 0.69450 (14) | 0.68115 (15) | 0.0445 (4) | |
H13A | 0.5770 | 0.6617 | 0.7415 | 0.053* | |
H13B | 0.6336 | 0.7085 | 0.6169 | 0.053* | |
C14 | 1.2579 (3) | 0.58442 (16) | 0.55097 (17) | 0.0547 (5) | |
H14A | 1.3259 | 0.5650 | 0.6116 | 0.082* | |
H14B | 1.3653 | 0.6187 | 0.4887 | 0.082* | |
H14C | 1.2047 | 0.5182 | 0.5370 | 0.082* | |
C15 | −0.0332 (3) | 0.70945 (17) | 1.03972 (15) | 0.0515 (5) | |
H15A | −0.0777 | 0.7399 | 1.1051 | 0.062* | |
H15B | 0.0791 | 0.6516 | 1.0502 | 0.062* | |
C16 | −0.2340 (3) | 0.65810 (16) | 1.02022 (14) | 0.0479 (4) | |
H16A | −0.1838 | 0.6150 | 0.9637 | 0.057* | |
H16B | −0.3320 | 0.7176 | 0.9951 | 0.057* | |
C17 | −0.6003 (4) | 0.7424 (2) | 1.2136 (2) | 0.0837 (8) | |
H17A | −0.7250 | 0.7243 | 1.1886 | 0.126* | |
H17B | −0.5170 | 0.8001 | 1.1608 | 0.126* | |
H17C | −0.6525 | 0.7681 | 1.2805 | 0.126* | |
N1 | 0.3461 (3) | 1.03869 (14) | 0.68603 (15) | 0.0601 (5) | |
H1N | 0.297 (4) | 1.105 (2) | 0.6619 (18) | 0.064 (6)* | |
N2 | 1.0693 (2) | 0.66347 (12) | 0.57513 (12) | 0.0420 (3) | |
H2N | 1.013 (3) | 0.6777 (16) | 0.5170 (17) | 0.053 (6)* | |
N3 | −0.4582 (3) | 0.64332 (17) | 1.23026 (14) | 0.0608 (5) | |
H3N | −0.358 (4) | 0.6518 (19) | 1.2550 (18) | 0.062 (7)* | |
O1 | −0.5847 (2) | 0.54093 (13) | 1.11255 (11) | 0.0635 (4) | |
O2 | −0.2388 (3) | 0.48404 (12) | 1.17328 (12) | 0.0682 (4) | |
S1 | −0.38571 (7) | 0.57068 (4) | 1.13655 (4) | 0.04786 (15) | |
Cl1 | 0.83672 (9) | 0.71229 (4) | 0.38363 (4) | 0.05522 (16) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0587 (12) | 0.0429 (10) | 0.0590 (12) | −0.0056 (9) | −0.0049 (9) | 0.0001 (9) |
C2 | 0.0478 (10) | 0.0388 (9) | 0.0450 (10) | −0.0050 (7) | −0.0108 (8) | −0.0050 (7) |
C3 | 0.0451 (9) | 0.0394 (9) | 0.0439 (9) | −0.0011 (7) | −0.0146 (7) | −0.0092 (7) |
C4 | 0.0425 (9) | 0.0438 (9) | 0.0419 (9) | −0.0002 (7) | −0.0146 (7) | −0.0063 (7) |
C5 | 0.0443 (10) | 0.0544 (10) | 0.0421 (9) | −0.0038 (8) | −0.0136 (8) | −0.0105 (8) |
C6 | 0.0475 (11) | 0.0599 (12) | 0.0568 (11) | 0.0039 (9) | −0.0081 (9) | −0.0203 (9) |
C7 | 0.0560 (11) | 0.0440 (10) | 0.0682 (13) | 0.0094 (8) | −0.0160 (10) | −0.0173 (9) |
C8 | 0.0549 (11) | 0.0380 (9) | 0.0544 (11) | 0.0004 (8) | −0.0160 (9) | −0.0108 (8) |
C9 | 0.0431 (9) | 0.0431 (9) | 0.0395 (9) | −0.0051 (7) | −0.0116 (7) | −0.0030 (7) |
C10 | 0.0475 (10) | 0.0397 (9) | 0.0531 (10) | −0.0116 (8) | −0.0078 (8) | −0.0059 (8) |
C11 | 0.0397 (9) | 0.0509 (10) | 0.0584 (11) | −0.0120 (8) | −0.0077 (8) | −0.0082 (9) |
C12 | 0.0424 (9) | 0.0410 (9) | 0.0517 (10) | −0.0069 (7) | −0.0068 (8) | −0.0015 (8) |
C13 | 0.0378 (9) | 0.0414 (9) | 0.0508 (10) | −0.0075 (7) | −0.0075 (7) | −0.0015 (8) |
C14 | 0.0471 (10) | 0.0516 (11) | 0.0615 (12) | 0.0044 (8) | −0.0095 (9) | −0.0068 (9) |
C15 | 0.0424 (10) | 0.0691 (12) | 0.0414 (9) | −0.0055 (9) | −0.0104 (8) | −0.0046 (9) |
C16 | 0.0496 (10) | 0.0560 (11) | 0.0379 (9) | −0.0042 (8) | −0.0126 (8) | −0.0047 (8) |
C17 | 0.0595 (14) | 0.111 (2) | 0.0876 (18) | 0.0127 (14) | −0.0122 (13) | −0.0464 (16) |
N1 | 0.0664 (11) | 0.0363 (9) | 0.0695 (11) | 0.0036 (8) | −0.0111 (9) | 0.0019 (8) |
N2 | 0.0390 (8) | 0.0431 (8) | 0.0437 (8) | −0.0023 (6) | −0.0133 (6) | −0.0031 (6) |
N3 | 0.0491 (10) | 0.0898 (14) | 0.0458 (9) | −0.0096 (9) | −0.0105 (8) | −0.0160 (9) |
O1 | 0.0580 (8) | 0.0756 (10) | 0.0605 (9) | −0.0186 (7) | −0.0204 (7) | −0.0076 (7) |
O2 | 0.0711 (10) | 0.0586 (9) | 0.0723 (10) | −0.0023 (7) | −0.0276 (8) | 0.0071 (7) |
S1 | 0.0467 (3) | 0.0543 (3) | 0.0422 (3) | −0.0076 (2) | −0.01441 (19) | −0.0012 (2) |
Cl1 | 0.0698 (3) | 0.0475 (3) | 0.0532 (3) | 0.0039 (2) | −0.0278 (2) | −0.0064 (2) |
Geometric parameters (Å, º) top
C1—N1 | 1.363 (3) | C12—C13 | 1.509 (2) |
C1—C2 | 1.365 (3) | C12—H12A | 0.9700 |
C1—H1 | 0.9300 | C12—H12B | 0.9700 |
C2—C3 | 1.439 (2) | C13—H13A | 0.9700 |
C2—C9 | 1.499 (2) | C13—H13B | 0.9700 |
C3—C4 | 1.406 (2) | C14—N2 | 1.480 (2) |
C3—C8 | 1.411 (2) | C14—H14A | 0.9600 |
C4—C5 | 1.380 (3) | C14—H14B | 0.9600 |
C4—H4 | 0.9300 | C14—H14C | 0.9600 |
C5—C6 | 1.409 (3) | C15—C16 | 1.525 (3) |
C5—C15 | 1.506 (3) | C15—H15A | 0.9700 |
C6—C7 | 1.370 (3) | C15—H15B | 0.9700 |
C6—H6 | 0.9300 | C16—S1 | 1.7679 (18) |
C7—C8 | 1.388 (3) | C16—H16A | 0.9700 |
C7—H7 | 0.9300 | C16—H16B | 0.9700 |
C8—N1 | 1.366 (2) | C17—N3 | 1.458 (3) |
C9—C13 | 1.527 (2) | C17—H17A | 0.9600 |
C9—C10 | 1.527 (2) | C17—H17B | 0.9600 |
C9—H9 | 0.9800 | C17—H17C | 0.9600 |
C10—C11 | 1.503 (3) | N1—H1N | 0.87 (2) |
C10—H10A | 0.9700 | N2—H2N | 0.89 (2) |
C10—H10B | 0.9700 | N3—S1 | 1.6116 (19) |
C11—N2 | 1.492 (2) | N3—H3N | 0.78 (2) |
C11—H11A | 0.9700 | O1—S1 | 1.4272 (14) |
C11—H11B | 0.9700 | O2—S1 | 1.4301 (15) |
C12—N2 | 1.502 (2) | | |
| | | |
N1—C1—C2 | 110.95 (18) | C12—C13—C9 | 112.80 (14) |
N1—C1—H1 | 124.5 | C12—C13—H13A | 109.0 |
C2—C1—H1 | 124.5 | C9—C13—H13A | 109.0 |
C1—C2—C3 | 105.67 (16) | C12—C13—H13B | 109.0 |
C1—C2—C9 | 127.22 (17) | C9—C13—H13B | 109.0 |
C3—C2—C9 | 127.11 (15) | H13A—C13—H13B | 107.8 |
C4—C3—C8 | 118.36 (16) | N2—C14—H14A | 109.5 |
C4—C3—C2 | 134.72 (16) | N2—C14—H14B | 109.5 |
C8—C3—C2 | 106.91 (15) | H14A—C14—H14B | 109.5 |
C5—C4—C3 | 120.04 (16) | N2—C14—H14C | 109.5 |
C5—C4—H4 | 120.0 | H14A—C14—H14C | 109.5 |
C3—C4—H4 | 120.0 | H14B—C14—H14C | 109.5 |
C4—C5—C6 | 119.39 (17) | C5—C15—C16 | 112.07 (15) |
C4—C5—C15 | 120.92 (17) | C5—C15—H15A | 109.2 |
C6—C5—C15 | 119.68 (17) | C16—C15—H15A | 109.2 |
C7—C6—C5 | 122.34 (18) | C5—C15—H15B | 109.2 |
C7—C6—H6 | 118.8 | C16—C15—H15B | 109.2 |
C5—C6—H6 | 118.8 | H15A—C15—H15B | 107.9 |
C6—C7—C8 | 117.64 (18) | C15—C16—S1 | 113.24 (12) |
C6—C7—H7 | 121.2 | C15—C16—H16A | 108.9 |
C8—C7—H7 | 121.2 | S1—C16—H16A | 108.9 |
N1—C8—C7 | 130.05 (18) | C15—C16—H16B | 108.9 |
N1—C8—C3 | 107.73 (17) | S1—C16—H16B | 108.9 |
C7—C8—C3 | 122.22 (18) | H16A—C16—H16B | 107.7 |
C2—C9—C13 | 111.95 (14) | N3—C17—H17A | 109.5 |
C2—C9—C10 | 112.59 (14) | N3—C17—H17B | 109.5 |
C13—C9—C10 | 108.55 (14) | H17A—C17—H17B | 109.5 |
C2—C9—H9 | 107.9 | N3—C17—H17C | 109.5 |
C13—C9—H9 | 107.9 | H17A—C17—H17C | 109.5 |
C10—C9—H9 | 107.9 | H17B—C17—H17C | 109.5 |
C11—C10—C9 | 111.80 (14) | C1—N1—C8 | 108.74 (16) |
C11—C10—H10A | 109.3 | C1—N1—H1N | 128.8 (15) |
C9—C10—H10A | 109.3 | C8—N1—H1N | 122.4 (15) |
C11—C10—H10B | 109.3 | C14—N2—C11 | 111.69 (14) |
C9—C10—H10B | 109.3 | C14—N2—C12 | 112.41 (14) |
H10A—C10—H10B | 107.9 | C11—N2—C12 | 110.27 (14) |
N2—C11—C10 | 110.57 (14) | C14—N2—H2N | 105.4 (13) |
N2—C11—H11A | 109.5 | C11—N2—H2N | 110.6 (13) |
C10—C11—H11A | 109.5 | C12—N2—H2N | 106.2 (13) |
N2—C11—H11B | 109.5 | C17—N3—S1 | 119.18 (16) |
C10—C11—H11B | 109.5 | C17—N3—H3N | 114.2 (17) |
H11A—C11—H11B | 108.1 | S1—N3—H3N | 111.8 (17) |
N2—C12—C13 | 109.36 (14) | O1—S1—O2 | 119.03 (9) |
N2—C12—H12A | 109.8 | O1—S1—N3 | 107.23 (10) |
C13—C12—H12A | 109.8 | O2—S1—N3 | 106.20 (10) |
N2—C12—H12B | 109.8 | O1—S1—C16 | 107.89 (9) |
C13—C12—H12B | 109.8 | O2—S1—C16 | 108.31 (9) |
H12A—C12—H12B | 108.3 | N3—S1—C16 | 107.69 (10) |
| | | |
N1—C1—C2—C3 | 0.1 (2) | C2—C9—C10—C11 | −178.59 (15) |
N1—C1—C2—C9 | −179.73 (17) | C13—C9—C10—C11 | −54.06 (19) |
C1—C2—C3—C4 | 177.9 (2) | C9—C10—C11—N2 | 58.1 (2) |
C9—C2—C3—C4 | −2.3 (3) | N2—C12—C13—C9 | −57.48 (19) |
C1—C2—C3—C8 | −0.6 (2) | C2—C9—C13—C12 | 179.30 (14) |
C9—C2—C3—C8 | 179.18 (16) | C10—C9—C13—C12 | 54.40 (19) |
C8—C3—C4—C5 | −0.8 (2) | C4—C5—C15—C16 | −112.37 (19) |
C2—C3—C4—C5 | −179.24 (18) | C6—C5—C15—C16 | 67.0 (2) |
C3—C4—C5—C6 | −0.2 (3) | C5—C15—C16—S1 | −168.50 (14) |
C3—C4—C5—C15 | 179.14 (16) | C2—C1—N1—C8 | 0.5 (2) |
C4—C5—C6—C7 | 0.9 (3) | C7—C8—N1—C1 | 180.0 (2) |
C15—C5—C6—C7 | −178.44 (18) | C3—C8—N1—C1 | −0.9 (2) |
C5—C6—C7—C8 | −0.5 (3) | C10—C11—N2—C14 | 174.23 (15) |
C6—C7—C8—N1 | 178.3 (2) | C10—C11—N2—C12 | −60.02 (19) |
C6—C7—C8—C3 | −0.7 (3) | C13—C12—N2—C14 | −175.61 (15) |
C4—C3—C8—N1 | −177.86 (16) | C13—C12—N2—C11 | 59.04 (19) |
C2—C3—C8—N1 | 0.9 (2) | C17—N3—S1—O1 | −54.9 (2) |
C4—C3—C8—C7 | 1.3 (3) | C17—N3—S1—O2 | 176.81 (17) |
C2—C3—C8—C7 | −179.87 (17) | C17—N3—S1—C16 | 60.96 (19) |
C1—C2—C9—C13 | −118.4 (2) | C15—C16—S1—O1 | 171.84 (14) |
C3—C2—C9—C13 | 61.9 (2) | C15—C16—S1—O2 | −58.07 (17) |
C1—C2—C9—C10 | 4.3 (3) | C15—C16—S1—N3 | 56.39 (17) |
C3—C2—C9—C10 | −175.50 (17) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···Cl1i | 0.87 (2) | 2.34 (2) | 3.2045 (18) | 173 (2) |
N2—H2N···Cl1 | 0.89 (2) | 2.21 (2) | 3.0978 (16) | 174 (2) |
N3—H3N···Cl1ii | 0.78 (2) | 2.53 (2) | 3.2601 (19) | 157 (2) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1, y, z+1. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C22H27N2O2S+·Br−·H2O | C17H26N3O2S+·Cl− |
Mr | 481.44 | 371.92 |
Crystal system, space group | Orthorhombic, P212121 | Triclinic, P1 |
Temperature (K) | 294 | 294 |
a, b, c (Å) | 9.4019 (6), 13.4089 (8), 18.0173 (11) | 6.1914 (5), 12.2298 (10), 12.9948 (11) |
α, β, γ (°) | 90, 90, 90 | 78.348 (1), 76.338 (1), 86.033 (1) |
V (Å3) | 2271.4 (2) | 936.18 (13) |
Z | 4 | 2 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 1.93 | 0.33 |
Crystal size (mm) | 0.16 × 0.12 × 0.07 | 0.18 × 0.15 × 0.08 |
|
Data collection |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer | Burker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) | – |
Tmin, Tmax | 0.75, 0.86 | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21861, 3984, 3761 | 9097, 3301, 3006 |
Rint | 0.066 | 0.018 |
(sin θ/λ)max (Å−1) | 0.595 | 0.595 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.024, 0.066, 1.06 | 0.036, 0.097, 1.03 |
No. of reflections | 3984 | 3301 |
No. of parameters | 279 | 231 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.25 | 0.24, −0.34 |
Absolute structure | Flack & Bernardinelli (2000), with how many Friedel pairs? | ? |
Absolute structure parameter | −0.007 (5) | ? |
Selected geometric parameters (Å, º) for (I) topC1—N1 | 1.369 (3) | C13—N2 | 1.473 (3) |
C10—N2 | 1.516 (3) | C17—S1 | 1.759 (2) |
| | | |
C13—N2—C14 | 114.5 (3) | C14—N2—C10 | 113.4 (2) |
C13—N2—C10 | 106.1 (2) | C17—S1—C16 | 104.28 (9) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···Br1 | 0.80 (2) | 2.71 (2) | 3.4747 (19) | 159 (2) |
N2—H2N···O1W | 0.81 (3) | 1.96 (3) | 2.740 (3) | 162 (2) |
O1W—H1W···Br1i | 0.78 (4) | 2.47 (4) | 3.244 (2) | 175 (3) |
O1W—H2W···O1ii | 0.78 (4) | 2.08 (4) | 2.827 (3) | 162 (3) |
Symmetry codes: (i) x−1/2, −y+3/2, −z+1; (ii) −x+1/2, −y+1, z+1/2. |
Selected geometric parameters (Å, º) for (II) topC1—N1 | 1.363 (3) | C12—N2 | 1.502 (2) |
C11—N2 | 1.492 (2) | N3—S1 | 1.6116 (19) |
| | | |
C14—N2—C11 | 111.69 (14) | C11—N2—C12 | 110.27 (14) |
C14—N2—C12 | 112.41 (14) | N3—S1—C16 | 107.69 (10) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···Cl1i | 0.87 (2) | 2.34 (2) | 3.2045 (18) | 173 (2) |
N2—H2N···Cl1 | 0.89 (2) | 2.21 (2) | 3.0978 (16) | 174 (2) |
N3—H3N···Cl1ii | 0.78 (2) | 2.53 (2) | 3.2601 (19) | 157 (2) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1, y, z+1. |
Selected topographical solid-state features of triptans topCrystal structure | τ1 (°) | τ2 (°) | τ3 (°) | d1* (Å) | d2# (Å) | Reference |
Sumatriptan | 3.1 (4) | 79.5 (2)a | -179.6 (2)c | -0.166 (2) | 6.41 | Ravikumar et al. (2006) |
Almotriptan | -23.7 (6) | 87.7 (4)a | 59.3 (3)c | 0.162 (3) | 6.45 | Ravikumar et al. (2008) |
Almotriptan malate | 22.9 (3) | 79.8 (2)a | -174.8 (2)c | -0.021 (2) | 6.37 | Ravikumar et al. (2008) |
Eletriptan hydrobromide | 24.5 (3) | 65.9 (3) | 168.7 (2) | -0.080 (2) | 6.48 | Present work |
Naratriptan hydrochloride | 4.3 (3) | 67.0 (2) | -168.5 (1) | 1.123 (2) | 6.76 | Present work |
Rizatriptan benzoate | -100.5 (2) | 80.2 (2)b | 85.4 (2)d | 1.456 (2) | 5.71 | Ravikumar et al. (2007b) |
Sumatriptan succinate | -112.1 (3) | 83.1 (3)a | -177.1 (2)c | 0.884 (1) | 5.82 | Ravikumar et al. (2004) |
Zolmitriptan | 108.8 (3) | -84.4 (3) | 65.8 (3)b | 2.433 (2) | 5.24 | Ravikumar et al. (2007a) |
τ1 = C1—C2—C9—C10; τ2 = C6—C5—C15—C16; τ3 = C5—C15—C16—S1;
* displacement distance of N2 from the mean plane of the indole ring.
# distance of N2 from the centre of the aromatic ring.
a C—C—C—S; b C—C—C—N; c C—C—S—N; d C—C—N—N. |
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Migraine headache is a severe throbbing pain over one or both halves of the scalp and is accompanied by nausea, vomiting, photophobia and/or phonophobia. Triptans are the family of tryptamine-based drugs specifically designed to alleviate migraine headaches, which they do by blocking serotonin receptors in blood vessels in the brain (Saxena & Tfelt-Hansen, 2001). They are designer drugs obtained by modifying the serotonin molecule (Goadsby, 1998). Triptan drugs were first introduced during the 1990s and are now available in different types under a variety of commercial names: sumatriptan (Imitrex), zolimitriptan (Zomig), rizatriptan (Maxalt), almotriptan (Axert), naratriptan (Amerge), eletriptan (Relpax) and frovatriptan (Frova). All triptans share a basic indole ring, with the side chains being different. These side chains affect the pharmacokinetics of these agents in ways that may be clinically significant as they may make them more, or less, effective (Isaac & Slassi, 2001).
Eletriptan and naratriptan, the second-generation drugs of Pfizer and Glaxo Wellcome, respectively, are more lipophilic and have higher oral bioavailability than sumatriptan (Tepper et al., 2002). We have been studying the structural characteristics of a series of triptans (Ravikumar et al., 2004, 2006, 2007a,b and 2008), and the present study of eletriptan hydrobromide monohydrate, (I), and naratriptan hydrochloride, (II), is a continuation of our investigation into the three-dimensional structural correlation of triptans.
Pertinent bond lengths and angles for (I) and (II) are listed in Tables 1 and 4, and the molecular structures are depicted in Figs. 1 and 2, respectively. Protonation of the molecules occurs in both structures at atom N2 - of the pyrolidine ring in (I) and the piperidine ring in (II); the sum of the angles at this atom is 334.0 (2)° in (I) and 334.4 (1)° in (II). An overlay of the triptans superimposing the planar indole systems (Fig. 3) reveals the significant similarities and orientation differences.
The use of the substituents at C2 and C5 of the indole ring is believed to provide binding selectivity and affinity for 5-HT1D receptors (Slassi et al., 2000) and provides a region of conformational flexibility in the molecule. The conformational difference between the two structures, (I) and (II), is in the orientation of the substituents at C2 [methyl pyrrolidinyl in (I) and methylpiperidinyl in (II)] and C5 [phenylsulfonylethyl in (I) and ethanesulfonamide in (II)] of the indole ring (Fig. 3). In (I), the two substituents are oriented on either side of the indole ring plane, whereas in (II) they are on the same side. Furthermore, the orientation of the side chain at C2 can be visualized in terms of the torsion angle τ1, C1—C2—C9—C10 [24.5 (2) in (I) and 4.3 (3)° in (II)], synperiplanar in both. The corresponding angles in other triptans are listed in Table 3, from which the two principal orientations - synperiplanar and anticlinal - can be noted in the solid-state structures.
An interesting comparison between the structures of (I) and (II) is the position of the protonated atom N2 relative to the indole ring system. In (I) it is intra, being almost coplanar with the indole ring plane [0.080 (2) Å], whereas in (II) it is extra, 1.123 (2) Å above the plane. The distance between atom N2 and the centroid of the C3–C8 aromatic ring remains almost equal in both structures [6.48 Å in (I) and 6.76 Å in (II)]. The corresponding distances - a parameter correlating the 5-HT1B-like [5-HT1D ?] receptor model (Moloney et al., 1999) - deduced for other triptans are listed in Table 3, which also indicates whether atom N2 is coplanar or not.
The ethanesulfonyl side chains of both (I) and (II) show a similar orientation, as indicated by the torsion angles τ2 (C6—C5—C15—C16) = 65.8 (2) and 67.0 (2)° and τ3 (C5—C15—C16—S1) = 168.7 (2) and -168.5 (1)°, respectively. It is interesting to note that the corresponding torsion angles found in other triptans (Table 3) all favour a similar synclinal orientation for τ2 but only some of them do for τ3. The terminal groups, phenyl in (I) and amide in (II), attached with this chain are antiperiplanar [C15—C16—S1—C17 = -175.9 (2)°] and synclinal [C15—C16—S1—N3 = 56.4 (2)°], respectively.
The conformation of the pyrolidine ring in (I) can be best described as an envelope, with the twofold axis through atom C13. The piperidine ring in (II) adopts a chair conformation. The dihedral angles of the mean plane of the pyrolidine or phenyl ring with the mean plane of the indole ring are 82.8 (1) and 71.1 (1)°, respectively, indicating near perpendicularity in (I).
In (I), the water molecule plays a key role in the hydrogen-bonding network. It acts as both donor and acceptor, creating a helical chain along the c axis (Fig. 4, Table 2). The sulfonyl O and Br atoms participate in the hydrogen-bonding network. In (II), the Cl- ion plays a central role in the hydrogen-bonding network (Fig. 5, Table 5). All three N atoms (N1, N2 and N3) form hydrogen bonds only with the Cl atom, even though the sulfonyl O atoms are available. The N2—H···Cl and N3—H···Cl hydrogen bonds link the molecules into a chain running along the c axis. The N1—H···Cl hydrogen bond links to a chain related by centrosymmetry, along the b axis, resulting in a supramolecular macrocycle that may be described in graph-set notation as R42(20) and R42(24) (Etter, 1990; Etter et al., 1990; Bernstein et al., 1995), forming sheets in the bc plane. Since these two rings are edge fused, they form an overall macrocylic R63(37) ring in the sheets.
In conclusion, such crystal structures provide useful information on the overall conformation of molecules, the orientations of the two indole ring substituents and the molecular interactions influencing crystal packing. A word of caution may be exercised regarding the C2 side-chain orientation, since in solid-state structures it is probably governed largely by the position of the counterions, viz. halide, succinate, malate, benzoate etc. and may not be significant for activity, in view of the flexibility of the chain.