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Acta Cryst. (2008). E64, m684    [ doi:10.1107/S1600536808010246 ]

(-)545-fac-[Delta]-Tris(L-prolinato)cobalt(III) trihydrate

M. Kato, M. Hayashi, T. Fujihara and A. Nagasawa

Abstract top

The absolute configuration of the octahedral fac-CoN3O3 title complex, [Co(C5H8NO2)3]·3H2O, has been determined by single-crystal X-ray analysis. A three-dimensional network of hydrogen bonds is observed between the proline carboxylate groups and the three uncoordinated water molecules.

Comment top

The optical activity, absolute configuration, and rearrangement of tris(L-prolinato)cobalt(III) complexes were studied by Denning & Piper (1965), in which the absolute configurations were assigned based on circular dichroism (CD) studies and 1H NMR spectra. In this work, single crystals of the (-)545-fac-[Co(L-pro)3] isomer (I) suitable for single-crystal X-ray analysis have been prepared. This has allowed the determination of the absolute configuration of (I) as Δ. The UV-Vis and CD spectra of (I) in H2O show good agreement with the reported spectra (Denning & Piper, 1965). The molecular structure, Fig. 1, shows three deprotonated proline molecules to chelate the cobalt(III) ion to form octahedral fac-CoN3O3 geometry. The three lattice water form a three-dimensional network of hydrogen bonds with the uncoordinated carbonyl groups of the proline molecules (Table 1 & Fig. 2).

Related literature top

For related literature, see: Denning & Piper (1965).

Experimental top

The title compound was prepared according to the literature method (Denning & Piper, 1965). Single crystals suitable for single-crystal X-ray analysis were obtained by vapor diffusion of ethanol into the aqueous solution of (I) at room temperature. Analysis found: C 39.59, H 6.58, N 9.10; C15H30CoN3O9 C29H34F6O2S2 requires: C 39.57, H 6.64, N 9.23.

Refinement top

The water- and N-bound H atoms were located in difference maps and refined with Uiso(H) = 1.5Ueq(O) or 1.5Ueq(N); see Table 1 for O-H and N-H bond distances. The remaining H atoms were placed in calculated positions, with C—H = 1.00 Å (for CH) and 0.99 Å (for CH2) and refined using a riding model, with Uiso(H) = 1.2Ueq(C).

Computing details top

Data collection: SMARTW2K/NT (Bruker, 2003); cell refinement: SAINTW2K/NT (Bruker, 2003); data reduction: SAINTW2K/NT (Bruker, 2003); program(s) used to solve structure: SHELXTL-NT (Bruker, 2003); program(s) used to refine structure: SHELXTL-NT (Bruker, 2003); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXTL-NT (Bruker, 2003).

Figures top
[Figure 1] Fig. 1. ORTEP drawing for (I), showing atom labelling scheme and displacement ellipsoids at the 50% probability level. All hydrogen atoms are omitted for clarity.
[Figure 2] Fig. 2. Three-dimensional network structure of hydrogen bonds viewed in projection down the a axis. Dashed lines indicate the hydrogen-bonding interactions. All hydrogen atoms are omitted for clarity.
(-)545-fac-Δ-Tris(L-prolinato)cobalt(III) trihydrate top
Crystal data top
[Co(C5H8NO2)3]·3H2OF000 = 960
Mr = 455.35Dx = 1.594 Mg m−3
Orthorhombic, P212121Mo Kα radiation
λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 705 reflections
a = 10.1673 (9) Åθ = 2.2–17.1º
b = 10.8433 (10) ŵ = 0.96 mm−1
c = 17.2157 (14) ÅT = 173 (2) K
V = 1898.0 (3) Å3Block, pink
Z = 40.13 × 0.08 × 0.07 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer		4522 independent reflections
Radiation source: fine-focus sealed tube2969 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.122
Detector resolution: 8.366 pixels mm-1θmax = 27.9º
T = 173(2) Kθmin = 2.2º
φ and ω scansh = −13→7
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)		k = −14→14
Tmin = 0.885, Tmax = 0.936l = −22→22
13762 measured reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of
independent and constrained refinement
R[F2 > 2σ(F2)] = 0.062  w = 1/[σ2(Fo2) + (0.0283P)2]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.107(Δ/σ)max < 0.001
S = 0.92Δρmax = 0.85 e Å−3
4522 reflectionsΔρmin = −0.51 e Å−3
274 parametersExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2596 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.04 (2)
Crystal data top
[Co(C5H8NO2)3]·3H2OV = 1898.0 (3) Å3
Mr = 455.35Z = 4
Orthorhombic, P212121Mo Kα
a = 10.1673 (9) ŵ = 0.96 mm−1
b = 10.8433 (10) ÅT = 173 (2) K
c = 17.2157 (14) Å0.13 × 0.08 × 0.07 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer		4522 independent reflections
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)		2969 reflections with I > 2σ(I)
Tmin = 0.885, Tmax = 0.936Rint = 0.122
13762 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of
independent and constrained refinement
wR(F2) = 0.107Δρmax = 0.85 e Å−3
S = 0.92Δρmin = −0.51 e Å−3
4522 reflectionsAbsolute structure: Flack (1983), 2596 Friedel pairs
274 parametersFlack parameter: 0.04 (2)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.3689 (5)0.9795 (5)0.1401 (3)0.0220 (11)
H1A0.43640.93960.10630.026*
C20.4210 (5)1.1046 (5)0.1661 (3)0.0309 (15)
H2A0.39401.12300.22010.037*
H2B0.51821.10740.16270.037*
C30.3589 (5)1.1948 (4)0.1093 (3)0.0248 (11)
H3A0.35611.27940.13090.030*
H3B0.40621.19580.05910.030*
C40.2218 (5)1.1408 (5)0.1008 (3)0.0251 (12)
H4A0.16781.15760.14750.030*
H4B0.17661.17490.05460.030*
C50.3343 (5)0.8910 (5)0.2056 (3)0.0216 (12)
C60.0485 (5)0.7863 (5)−0.0354 (3)0.0168 (11)
H6A−0.01940.7199−0.03090.020*
C70.0427 (5)0.8403 (5)−0.1185 (3)0.0226 (12)
H7A0.13160.8630−0.13720.027*
H7B0.00290.7809−0.15530.027*
C8−0.0437 (5)0.9539 (4)−0.1089 (3)0.0223 (11)
H8A−0.02861.0141−0.15120.027*
H8B−0.13810.9316−0.10740.027*
C90.0024 (5)1.0038 (5)−0.0315 (3)0.0213 (12)
H9A0.08931.0442−0.03640.026*
H9B−0.06141.0637−0.01010.026*
C100.1804 (5)0.7331 (5)−0.0136 (3)0.0172 (11)
C11−0.0584 (5)0.8563 (5)0.2340 (3)0.0208 (12)
H11A−0.00410.84480.28190.025*
C12−0.1937 (5)0.9052 (5)0.2579 (3)0.0311 (15)
H12A−0.26430.85980.23050.037*
H12B−0.20690.89600.31460.037*
C13−0.1946 (5)1.0400 (5)0.2351 (3)0.0258 (13)
H13A−0.15941.09250.27730.031*
H13B−0.28441.06810.22160.031*
C14−0.1050 (5)1.0419 (5)0.1647 (3)0.0205 (12)
H14A−0.15231.01320.11780.025*
H14B−0.07101.12610.15510.025*
C15−0.0597 (5)0.7356 (5)0.1891 (3)0.0180 (11)
Co10.12024 (6)0.87354 (6)0.11104 (3)0.01537 (16)
N10.2469 (4)1.0046 (4)0.0916 (2)0.0190 (10)
H1C0.26980.99570.04700.023*
N20.0110 (4)0.8912 (4)0.01862 (19)0.0144 (9)
H2C−0.0700.87570.03380.017*
N30.0039 (4)0.9561 (4)0.1851 (2)0.0194 (11)
H3C0.04600.99000.21080.023*
O10.2224 (3)0.8373 (3)0.20056 (17)0.0198 (9)
O20.4133 (3)0.8715 (4)0.25896 (18)0.0321 (9)
O30.2340 (3)0.7768 (3)0.04792 (18)0.0182 (8)
O40.2308 (3)0.6524 (3)−0.05483 (18)0.0275 (9)
O50.0152 (3)0.7314 (3)0.12902 (16)0.0189 (8)
O6−0.1273 (4)0.6473 (3)0.21062 (17)0.0246 (8)
O70.1135 (5)0.9744 (5)0.4313 (3)0.0419 (12)
H7C0.096 (6)1.024 (6)0.392 (4)0.063*
H7D0.051 (7)0.966 (8)0.442 (4)0.063*
O80.2893 (4)0.7736 (4)0.3961 (2)0.0383 (11)
H8C0.227 (6)0.835 (6)0.404 (3)0.057*
H8D0.328 (6)0.796 (6)0.360 (3)0.057*
O90.3649 (5)0.5837 (4)0.5018 (3)0.0461 (13)
H9C0.356 (8)0.640 (6)0.475 (4)0.069*
H9D0.328 (7)0.531 (6)0.485 (4)0.069*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.016 (3)0.027 (3)0.023 (2)−0.002 (3)0.002 (2)−0.003 (2)
C20.024 (3)0.034 (4)0.035 (3)−0.010 (3)0.000 (2)−0.007 (3)
C30.029 (3)0.019 (3)0.027 (2)−0.006 (2)0.009 (3)−0.002 (3)
C40.031 (3)0.019 (3)0.025 (3)0.003 (3)0.006 (2)−0.004 (3)
C50.028 (3)0.016 (3)0.021 (3)0.005 (2)0.002 (2)−0.005 (2)
C60.018 (3)0.018 (3)0.015 (2)−0.005 (2)0.004 (2)−0.008 (2)
C70.024 (3)0.035 (3)0.009 (2)−0.001 (2)−0.001 (2)−0.002 (2)
C80.019 (3)0.030 (3)0.018 (2)0.000 (2)−0.001 (3)0.009 (3)
C90.022 (3)0.018 (3)0.024 (3)0.000 (2)0.000 (2)0.003 (2)
C100.015 (3)0.017 (3)0.019 (3)−0.002 (2)0.007 (2)−0.001 (2)
C110.028 (3)0.015 (3)0.019 (2)−0.001 (3)0.003 (2)0.000 (2)
C120.031 (3)0.025 (4)0.037 (3)−0.006 (3)0.014 (3)0.001 (3)
C130.018 (3)0.029 (3)0.030 (3)0.000 (3)0.004 (2)−0.003 (3)
C140.022 (3)0.015 (3)0.025 (3)0.003 (3)−0.003 (3)0.001 (2)
C150.017 (3)0.018 (3)0.019 (3)−0.002 (2)−0.006 (2)−0.002 (2)
Co10.0161 (3)0.0153 (3)0.0147 (3)−0.0008 (3)−0.0009 (3)−0.0009 (3)
N10.020 (2)0.019 (2)0.018 (2)0.0016 (19)−0.0008 (19)−0.0008 (17)
N20.013 (2)0.015 (2)0.0159 (19)0.0001 (19)−0.0015 (17)0.0004 (18)
N30.026 (3)0.012 (2)0.021 (2)−0.004 (2)−0.003 (2)−0.0027 (18)
O10.021 (2)0.023 (2)0.0158 (17)0.0023 (17)−0.0061 (16)0.0040 (15)
O20.033 (2)0.040 (2)0.0236 (18)0.001 (2)−0.0133 (16)0.003 (2)
O30.0158 (18)0.019 (2)0.0199 (17)0.0037 (16)−0.0049 (15)−0.0045 (15)
O40.0225 (19)0.034 (3)0.0261 (19)0.0057 (18)0.0014 (16)−0.0104 (18)
O50.0215 (18)0.016 (2)0.0194 (19)−0.0054 (16)−0.0042 (15)−0.0002 (14)
O60.0259 (18)0.021 (2)0.0270 (17)−0.005 (2)−0.0014 (17)0.0053 (15)
O70.041 (3)0.046 (3)0.039 (2)0.009 (3)−0.003 (3)0.0153 (19)
O80.049 (3)0.034 (3)0.032 (2)−0.001 (2)0.002 (2)0.004 (2)
O90.048 (3)0.036 (3)0.055 (3)−0.005 (3)−0.006 (3)0.004 (2)
Geometric parameters (Å, °) top
C1—N11.520 (6)C11—N31.510 (6)
C1—C51.521 (7)C11—C151.520 (7)
C1—C21.523 (7)C11—C121.530 (7)
C1—H1A1.0000C11—H11A1.0000
C2—C31.520 (7)C12—C131.514 (7)
C2—H2A0.9900C12—H12A0.9900
C2—H2B0.9900C12—H12B0.9900
C3—C41.518 (6)C13—C141.516 (6)
C3—H3A0.9900C13—H13A0.9900
C3—H3B0.9900C13—H13B0.9900
C4—N11.507 (6)C14—N31.488 (6)
C4—H4A0.9900C14—H14A0.9900
C4—H4B0.9900C14—H14B0.9900
C5—O21.238 (5)C15—O61.235 (6)
C5—O11.282 (6)C15—O51.285 (5)
C6—C101.508 (6)Co1—O11.900 (3)
C6—N21.518 (6)Co1—O51.900 (3)
C6—C71.546 (6)Co1—O31.903 (3)
C6—H6A1.0000Co1—N11.947 (4)
C7—C81.522 (7)Co1—N21.950 (3)
C7—H7A0.9900Co1—N31.956 (4)
C7—H7B0.9900N1—H1C0.8117
C8—C91.513 (6)N2—H2C0.8806
C8—H8A0.9900N3—H3C0.7180
C8—H8B0.9900O7—H7C0.88 (6)
C9—N21.497 (6)O7—H7D0.66 (7)
C9—H9A0.9900O8—H8C0.93 (6)
C9—H9B0.9900O8—H8D0.77 (6)
C10—O41.237 (6)O9—H9C0.77 (6)
C10—O31.282 (5)O9—H9D0.74 (6)
N1—C1—C5109.4 (4)C13—C12—C11105.7 (4)
N1—C1—C2106.6 (4)C13—C12—H12A110.6
C5—C1—C2115.2 (4)C11—C12—H12A110.6
N1—C1—H1A108.5C13—C12—H12B110.6
C5—C1—H1A108.5C11—C12—H12B110.6
C2—C1—H1A108.5H12A—C12—H12B108.7
C3—C2—C1103.9 (4)C12—C13—C14102.5 (4)
C3—C2—H2A111.0C12—C13—H13A111.3
C1—C2—H2A111.0C14—C13—H13A111.3
C3—C2—H2B111.0C12—C13—H13B111.3
C1—C2—H2B111.0C14—C13—H13B111.3
H2A—C2—H2B109.0H13A—C13—H13B109.2
C4—C3—C2101.3 (4)N3—C14—C13104.5 (4)
C4—C3—H3A111.5N3—C14—H14A110.9
C2—C3—H3A111.5C13—C14—H14A110.9
C4—C3—H3B111.5N3—C14—H14B110.9
C2—C3—H3B111.5C13—C14—H14B110.9
H3A—C3—H3B109.3H14A—C14—H14B108.9
N1—C4—C3103.5 (4)O6—C15—O5123.0 (5)
N1—C4—H4A111.1O6—C15—C11121.3 (4)
C3—C4—H4A111.1O5—C15—C11115.8 (4)
N1—C4—H4B111.1O1—Co1—O590.41 (14)
C3—C4—H4B111.1O1—Co1—O390.97 (14)
H4A—C4—H4B109.0O5—Co1—O389.27 (14)
O2—C5—O1123.3 (5)O1—Co1—N185.92 (15)
O2—C5—C1120.5 (5)O5—Co1—N1172.63 (16)
O1—C5—C1116.2 (4)O3—Co1—N184.41 (15)
C10—C6—N2111.0 (4)O1—Co1—N2173.64 (17)
C10—C6—C7114.1 (4)O5—Co1—N283.85 (15)
N2—C6—C7105.9 (4)O3—Co1—N286.24 (15)
C10—C6—H6A108.6N1—Co1—N299.48 (16)
N2—C6—H6A108.6O1—Co1—N384.07 (15)
C7—C6—H6A108.6O5—Co1—N385.70 (16)
C8—C7—C6103.2 (4)O3—Co1—N3172.90 (16)
C8—C7—H7A111.1N1—Co1—N3100.25 (17)
C6—C7—H7A111.1N2—Co1—N398.17 (16)
C8—C7—H7B111.1C4—N1—C1104.8 (4)
C6—C7—H7B111.1C4—N1—Co1125.9 (3)
H7A—C7—H7B109.1C1—N1—Co1108.3 (3)
C9—C8—C7101.9 (4)C4—N1—H1C105.4
C9—C8—H8A111.4C1—N1—H1C105.4
C7—C8—H8A111.4Co1—N1—H1C105.4
C9—C8—H8B111.4C9—N2—C6105.8 (3)
C7—C8—H8B111.4C9—N2—Co1125.7 (3)
H8A—C8—H8B109.3C6—N2—Co1106.5 (3)
N2—C9—C8103.6 (4)C9—N2—H2C105.8
N2—C9—H9A111.0C6—N2—H2C105.8
C8—C9—H9A111.0Co1—N2—H2C105.8
N2—C9—H9B111.0C14—N3—C11105.5 (4)
C8—C9—H9B111.0C14—N3—Co1125.6 (3)
H9A—C9—H9B109.0C11—N3—Co1106.8 (3)
O4—C10—O3124.0 (5)C14—N3—H3C105.8
O4—C10—C6119.8 (5)C11—N3—H3C105.8
O3—C10—C6116.2 (4)Co1—N3—H3C105.8
N3—C11—C15109.7 (4)C5—O1—Co1116.5 (3)
N3—C11—C12106.2 (4)C10—O3—Co1114.7 (3)
C15—C11—C12115.3 (4)C15—O5—Co1115.8 (3)
N3—C11—H11A108.5H7C—O7—H7D95 (7)
C15—C11—H11A108.5H8C—O8—H8D104 (6)
C12—C11—H11A108.5H9C—O9—H9D108 (8)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O9—H9D···O4i0.74 (6)2.19 (7)2.907 (6)164 (8)
O8—H8D···O20.77 (6)2.11 (6)2.880 (5)173 (7)
O7—H7D···O9ii0.66 (7)2.20 (6)2.848 (7)167 (9)
O9—H9C···O80.77 (6)2.09 (7)2.853 (6)166 (8)
O8—H8C···O70.93 (6)1.96 (6)2.882 (7)172 (5)
Symmetry codes: (i) −x+1/2, −y+1, z+1/2; (ii) x−1/2, −y+3/2, −z+1.
Table 1
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O9—H9D···O4i0.74 (6)2.19 (7)2.907 (6)164 (8)
O8—H8D···O20.77 (6)2.11 (6)2.880 (5)173 (7)
O7—H7D···O9ii0.66 (7)2.20 (6)2.848 (7)167 (9)
O9—H9C···O80.77 (6)2.09 (7)2.853 (6)166 (8)
O8—H8C···O70.93 (6)1.96 (6)2.882 (7)172 (5)
Symmetry codes: (i) −x+1/2, −y+1, z+1/2; (ii) x−1/2, −y+3/2, −z+1.
references
References top

Bruker (2003). SAINT-W2K/NT, SMART-W2K/NT and SHELXTL-NT. Bruker AXS Inc., Madison, Wisconsin, USA.

Denning, R. G. & Piper, T. S. (1965). Inorg. Chem. 5, 1056–1065.

Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.

Flack, H. D. (1983). Acta Cryst. A39, 876–881.

Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.