organic compounds
(E)-2-(2-Hydroxy-5-iodobenzylidene)hydrazinecarboxamide
aYoung Researchers Club, Tabriz Branch, Islamic Azad University, Tabriz, Iran, bDepartment of Chemistry, Ardabil Branch, Islamic Azad University, Ardabil, Iran, cDepartment of Chemistry, Faculty of Science, Tabriz Branch, Islamic Azad University, PO Box 1655, Tabriz, Iran, and dDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran, 1983963113, Iran
*Correspondence e-mail: bikas_r@yahoo.com
In the title molecule, C8H8IN3O2, there is an intramolecular O—H⋯N hydrogen bond between the hydroxy group and the imine N atom, which generates an S(6) ring. In the crystal, the carbonyl O atom accepts two different N—H⋯O hydrogen bonds, which connect molecules with two R22(8) motifs.
Related literature
For historical background to et al. (1987); Pickart et al. (1983). For related structures see: Bikas et al. (2010, 2012a,b); Monfared et al. (2010a). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008). For catalytic applications of aroylhydrazones, see: Monfared et al. (2010b). For a similiar structure, see: Abboud et al. (1995).
see: ArapovExperimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812010197/vm2154sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812010197/vm2154Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812010197/vm2154Isup3.cml
For preparing the title compound a methanol (10 ml) solution of 2-hydroxy-5-iodobenzaldehyde (1.5 mmol) was added drop-wise to a methanol solution (10 ml) of semicarbazide (1.5 mmol), and the mixture was refluxed for 3 h. The solution was then evaporated on a steam bath to 5 ml and cooled to room temperature. The light-yellow precipitates of the title compound were separated and filtered off, washed with 3 ml of cooled methanol and then dried in air. Colorless crystals were obtained from its methanol solution by slow solvent evaporation. Yield: 92%. IR (cm-1): 3464 (m, O—H), 3176 (m, broad, N—H), 1699 (vs, C=O), 1594 (s, C=N), 1463 (s), 1340 (m), 1259 (vs), 1187 (s), 1072 (m), 942 (vs), 893 (m), 818 (m), 769 (vs), 682 (m), 613 (m), 572 (vs), 517 (s), 522 (m), 472 (vs), 427 (vs).
The hydrogen atoms of the N—H and O—H groups were found in a difference Fourier map and refined isotropically with a distance restraint to 0.84 Å for the O—H group. All other H atoms were positioned geometrically and refined as riding atoms with C—H = 0.95 Å, Uiso(H) = 1.2Ueq(C) aromatic and imine H atoms.
Semicarbazone compounds are derived from the condensation of
and semicarbazides. This class are important tridentate O, N, O-donor ligands. As biologically active compounds, find application in the treatment of diseases such as anti-tumor, tuberculosis, leprosy and mental disorder. Furthermore, semicarbazone have wide spread applications in fields such as coordination chemistry, bioinorganic chemistry, and in magnetic, electronic, nonlinear optically active and fluorescent compounds. Also semicarbazone metal complexes seem to be a good candidate for catalytic oxidation studies because of their resist to oxidation (Monfared et al., 2010b).As part of our studies on the synthesis and characterization of hydrazone derivatives (Bikas et al., 2010; Bikas et al., 2012a,b), we report here the
of (E)-2-(2-hydroxy-5-iodobenzylidene)hydrazinecarboxamide (Fig.1). Bond distances are in the normal range for similar hydrazone compounds (Abboud et al., 1995). The molecule is approximately planar, with an r.m.s. deviation from the mean plane through all 14 non-H atoms of 0.181 (2) Å. The dihedral angle between the phenyl ring plane and the least-squares plane through the N3—C8—O2—N2 unit is 14.00 (13)°. In the of the title compound, the molecule adopts an E configuration with respect to the C7=N1 bond. In the of the title compound, there is an intramolecular O—H···N hydrogen bonding between the hydroxyl group and imine nitrogen atom. The carbonyl group forms two different intermolecular N—H···O hydrogen bonds parallel to ac- plane which connects molecules with two R22(8) motifs (Table 1, Fig. 2).For historical background to
see: Arapov et al. (1987); Pickart et al. (1983). For related structures see: Bikas et al. (2010, 2012a,b); Monfared et al. (2010a). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008). For catalytic applications of aroylhydrazones, see: Monfared et al. (2010b). For a similiar structure, see: Abboud et al. (1995).Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C8H8IN3O2 | F(000) = 584 |
Mr = 305.07 | Dx = 2.038 Mg m−3 |
Monoclinic, P2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yc | Cell parameters from 2686 reflections |
a = 9.1066 (18) Å | θ = 2.7–29.2° |
b = 7.6277 (15) Å | µ = 3.20 mm−1 |
c = 14.375 (3) Å | T = 120 K |
β = 95.31 (3)° | Block, colorless |
V = 994.3 (3) Å3 | 0.25 × 0.13 × 0.12 mm |
Z = 4 |
Stoe IPDS 2T diffractometer | 2686 independent reflections |
Radiation source: fine-focus sealed tube | 2362 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Detector resolution: 0.15 mm pixels mm-1 | θmax = 29.2°, θmin = 2.7° |
rotation method scans | h = −12→12 |
Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005) | k = −10→10 |
Tmin = 0.502, Tmax = 0.700 | l = −18→19 |
10438 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0208P)2 + 1.0932P] where P = (Fo2 + 2Fc2)/3 |
2686 reflections | (Δ/σ)max = 0.001 |
143 parameters | Δρmax = 0.75 e Å−3 |
1 restraint | Δρmin = −0.71 e Å−3 |
C8H8IN3O2 | V = 994.3 (3) Å3 |
Mr = 305.07 | Z = 4 |
Monoclinic, P2/c | Mo Kα radiation |
a = 9.1066 (18) Å | µ = 3.20 mm−1 |
b = 7.6277 (15) Å | T = 120 K |
c = 14.375 (3) Å | 0.25 × 0.13 × 0.12 mm |
β = 95.31 (3)° |
Stoe IPDS 2T diffractometer | 2686 independent reflections |
Absorption correction: numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005) | 2362 reflections with I > 2σ(I) |
Tmin = 0.502, Tmax = 0.700 | Rint = 0.041 |
10438 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 1 restraint |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.13 | Δρmax = 0.75 e Å−3 |
2686 reflections | Δρmin = −0.71 e Å−3 |
143 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.71642 (2) | 0.52615 (2) | 1.210107 (13) | 0.02620 (6) | |
O2 | 1.52011 (18) | 1.0591 (2) | 0.88088 (11) | 0.0160 (3) | |
N2 | 1.3349 (2) | 0.9116 (3) | 0.93933 (14) | 0.0149 (4) | |
C8 | 1.3955 (2) | 0.9896 (3) | 0.86612 (16) | 0.0137 (4) | |
N3 | 1.3205 (2) | 0.9864 (3) | 0.78198 (15) | 0.0166 (4) | |
N1 | 1.1902 (2) | 0.8602 (3) | 0.93061 (14) | 0.0134 (4) | |
O1 | 0.9242 (2) | 0.8354 (3) | 0.84348 (13) | 0.0217 (4) | |
C1 | 0.9856 (3) | 0.7452 (3) | 1.00333 (17) | 0.0139 (4) | |
C2 | 0.8840 (3) | 0.7661 (3) | 0.92413 (17) | 0.0150 (4) | |
C7 | 1.1398 (3) | 0.7979 (3) | 1.00415 (16) | 0.0137 (4) | |
H7 | 1.2036 | 0.7860 | 1.0599 | 0.016* | |
C6 | 0.9357 (3) | 0.6755 (3) | 1.08517 (17) | 0.0165 (5) | |
H6 | 1.0028 | 0.6609 | 1.1393 | 0.020* | |
C4 | 0.6899 (3) | 0.6494 (3) | 1.00927 (19) | 0.0191 (5) | |
H4 | 0.5895 | 0.6172 | 1.0115 | 0.023* | |
C3 | 0.7373 (3) | 0.7178 (3) | 0.92780 (18) | 0.0187 (5) | |
H3 | 0.6691 | 0.7319 | 0.8742 | 0.022* | |
C5 | 0.7893 (3) | 0.6278 (3) | 1.08752 (18) | 0.0173 (5) | |
H2 | 1.380 (4) | 0.917 (4) | 0.990 (3) | 0.022 (8)* | |
H3A | 1.244 (4) | 0.929 (5) | 0.773 (3) | 0.029 (9)* | |
H3B | 1.359 (4) | 1.028 (5) | 0.738 (3) | 0.028 (9)* | |
H1 | 1.016 (2) | 0.849 (5) | 0.849 (3) | 0.037 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.03341 (10) | 0.02256 (9) | 0.02507 (9) | −0.00405 (7) | 0.01569 (7) | 0.00293 (7) |
O2 | 0.0139 (7) | 0.0241 (10) | 0.0102 (8) | −0.0040 (6) | 0.0015 (6) | −0.0006 (6) |
N2 | 0.0121 (9) | 0.0243 (10) | 0.0081 (9) | −0.0052 (8) | 0.0003 (7) | 0.0002 (8) |
C8 | 0.0143 (9) | 0.0174 (12) | 0.0095 (9) | 0.0005 (8) | 0.0019 (8) | −0.0004 (8) |
N3 | 0.0153 (9) | 0.0243 (11) | 0.0101 (9) | −0.0040 (8) | 0.0007 (7) | 0.0005 (8) |
N1 | 0.0112 (9) | 0.0159 (9) | 0.0132 (9) | −0.0012 (7) | 0.0011 (7) | −0.0023 (7) |
O1 | 0.0150 (9) | 0.0375 (11) | 0.0121 (8) | −0.0015 (7) | −0.0009 (7) | 0.0058 (7) |
C1 | 0.0149 (11) | 0.0130 (12) | 0.0141 (10) | −0.0002 (8) | 0.0032 (8) | −0.0014 (8) |
C2 | 0.0147 (11) | 0.0174 (11) | 0.0131 (11) | −0.0005 (8) | 0.0020 (8) | −0.0005 (9) |
C7 | 0.0130 (10) | 0.0171 (11) | 0.0109 (10) | −0.0006 (8) | 0.0010 (8) | −0.0011 (8) |
C6 | 0.0176 (11) | 0.0180 (12) | 0.0140 (11) | 0.0003 (9) | 0.0030 (9) | 0.0010 (9) |
C4 | 0.0147 (11) | 0.0188 (12) | 0.0249 (13) | −0.0037 (9) | 0.0070 (9) | −0.0054 (10) |
C3 | 0.0149 (11) | 0.0231 (13) | 0.0181 (12) | 0.0001 (9) | 0.0017 (9) | −0.0031 (9) |
C5 | 0.0204 (11) | 0.0137 (11) | 0.0194 (12) | −0.0014 (8) | 0.0106 (9) | 0.0005 (9) |
I1—C5 | 2.089 (2) | C1—C6 | 1.404 (3) |
O2—C8 | 1.253 (3) | C1—C2 | 1.408 (3) |
N2—C8 | 1.369 (3) | C1—C7 | 1.460 (3) |
N2—N1 | 1.369 (3) | C2—C3 | 1.391 (3) |
N2—H2 | 0.80 (4) | C7—H7 | 0.9500 |
C8—N3 | 1.333 (3) | C6—C5 | 1.385 (3) |
N3—H3A | 0.82 (4) | C6—H6 | 0.9500 |
N3—H3B | 0.81 (4) | C4—C5 | 1.387 (4) |
N1—C7 | 1.282 (3) | C4—C3 | 1.387 (4) |
O1—C2 | 1.355 (3) | C4—H4 | 0.9500 |
O1—H1 | 0.841 (18) | C3—H3 | 0.9500 |
C8—N2—N1 | 120.5 (2) | C3—C2—C1 | 120.0 (2) |
C8—N2—H2 | 118 (2) | N1—C7—C1 | 120.9 (2) |
N1—N2—H2 | 120 (2) | N1—C7—H7 | 119.6 |
O2—C8—N3 | 122.8 (2) | C1—C7—H7 | 119.6 |
O2—C8—N2 | 118.5 (2) | C5—C6—C1 | 120.4 (2) |
N3—C8—N2 | 118.7 (2) | C5—C6—H6 | 119.8 |
C8—N3—H3A | 121 (3) | C1—C6—H6 | 119.8 |
C8—N3—H3B | 118 (3) | C5—C4—C3 | 119.9 (2) |
H3A—N3—H3B | 120 (4) | C5—C4—H4 | 120.0 |
C7—N1—N2 | 116.5 (2) | C3—C4—H4 | 120.0 |
C2—O1—H1 | 108 (3) | C4—C3—C2 | 120.4 (2) |
C6—C1—C2 | 118.8 (2) | C4—C3—H3 | 119.8 |
C6—C1—C7 | 118.9 (2) | C2—C3—H3 | 119.8 |
C2—C1—C7 | 122.3 (2) | C6—C5—C4 | 120.4 (2) |
O1—C2—C3 | 118.2 (2) | C6—C5—I1 | 120.0 (2) |
O1—C2—C1 | 121.8 (2) | C4—C5—I1 | 119.59 (17) |
N1—N2—C8—O2 | 169.1 (2) | C2—C1—C6—C5 | 0.2 (4) |
N1—N2—C8—N3 | −11.9 (3) | C7—C1—C6—C5 | 178.5 (2) |
C8—N2—N1—C7 | −175.9 (2) | C5—C4—C3—C2 | −0.3 (4) |
C6—C1—C2—O1 | 178.8 (2) | O1—C2—C3—C4 | −178.8 (2) |
C7—C1—C2—O1 | 0.6 (4) | C1—C2—C3—C4 | 0.1 (4) |
C6—C1—C2—C3 | −0.1 (4) | C1—C6—C5—C4 | −0.4 (4) |
C7—C1—C2—C3 | −178.3 (2) | C1—C6—C5—I1 | −179.51 (18) |
N2—N1—C7—C1 | 177.8 (2) | C3—C4—C5—C6 | 0.5 (4) |
C6—C1—C7—N1 | 179.1 (2) | C3—C4—C5—I1 | 179.59 (19) |
C2—C1—C7—N1 | −2.6 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O2i | 0.81 (4) | 2.13 (4) | 2.920 (3) | 163 (3) |
N2—H2···O2ii | 0.80 (4) | 2.00 (4) | 2.800 (3) | 176 (3) |
O1—H1···N1 | 0.84 (2) | 1.88 (3) | 2.628 (3) | 147 (4) |
Symmetry codes: (i) −x+3, y, −z+3/2; (ii) −x+3, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C8H8IN3O2 |
Mr | 305.07 |
Crystal system, space group | Monoclinic, P2/c |
Temperature (K) | 120 |
a, b, c (Å) | 9.1066 (18), 7.6277 (15), 14.375 (3) |
β (°) | 95.31 (3) |
V (Å3) | 994.3 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.20 |
Crystal size (mm) | 0.25 × 0.13 × 0.12 |
Data collection | |
Diffractometer | Stoe IPDS 2T |
Absorption correction | Numerical (shape of crystal determined optically; X-RED32 and X-SHAPE, Stoe & Cie, 2005) |
Tmin, Tmax | 0.502, 0.700 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10438, 2686, 2362 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.056, 1.13 |
No. of reflections | 2686 |
No. of parameters | 143 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.75, −0.71 |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O2i | 0.81 (4) | 2.13 (4) | 2.920 (3) | 163 (3) |
N2—H2···O2ii | 0.80 (4) | 2.00 (4) | 2.800 (3) | 176 (3) |
O1—H1···N1 | 0.841 (18) | 1.88 (3) | 2.628 (3) | 147 (4) |
Symmetry codes: (i) −x+3, y, −z+3/2; (ii) −x+3, −y+2, −z+2. |
Acknowledgements
The authors are grateful to the Islamic Azad University (Tabriz Branch) and the Islamic Azad University (Ardabil Branch) for financial support.
References
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Semicarbazone compounds are derived from the condensation of carbonyl compounds and semicarbazides. This class are important tridentate O, N, O-donor ligands. As biologically active compounds, semicarbazones find application in the treatment of diseases such as anti-tumor, tuberculosis, leprosy and mental disorder. Furthermore, semicarbazone have wide spread applications in fields such as coordination chemistry, bioinorganic chemistry, and in magnetic, electronic, nonlinear optically active and fluorescent compounds. Also semicarbazone metal complexes seem to be a good candidate for catalytic oxidation studies because of their resist to oxidation (Monfared et al., 2010b).
As part of our studies on the synthesis and characterization of hydrazone derivatives (Bikas et al., 2010; Bikas et al., 2012a,b), we report here the crystal structure of (E)-2-(2-hydroxy-5-iodobenzylidene)hydrazinecarboxamide (Fig.1). Bond distances are in the normal range for similar hydrazone compounds (Abboud et al., 1995). The molecule is approximately planar, with an r.m.s. deviation from the mean plane through all 14 non-H atoms of 0.181 (2) Å. The dihedral angle between the phenyl ring plane and the least-squares plane through the N3—C8—O2—N2 unit is 14.00 (13)°. In the crystal structure of the title compound, the molecule adopts an E configuration with respect to the C7=N1 bond. In the crystal structure of the title compound, there is an intramolecular O—H···N hydrogen bonding between the hydroxyl group and imine nitrogen atom. The carbonyl group forms two different intermolecular N—H···O hydrogen bonds parallel to ac- plane which connects molecules with two R22(8) motifs (Table 1, Fig. 2).