issue contents
July 2022 issue
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Cover illustration: dNTPase [Liu et al. (2022), Acta Cryst. D78, 817–824]. Beam image-shift electron cryo-tomography (BISECT) and constrained single-particle tomography (CSPT) were used to obtain a high-resolution structure of an ∼300 kDa dNTPase complex from Vibrio cholerae.
CCP-EM
Open
access
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A new method, checkMySequence, for the fast and automated detection of register errors in protein models built into cryo-EM reconstructions is presented.
Open
access
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In this article, it is shown that high-throughput strategies for tomographic data acquisition combined with unsupervised techniques for image analysis provide the foundation for closing the resolution gap between the high-resolution strategies used to study molecular assemblies reconstituted in vitro and techniques for in situ structure determination.
research papers
Crystal structures of TEM-171 and its complexes with tazobactam reveal a novel structural intermediate in the enzyme-inhibition process.
Crystal structures of apo and trehalose-bound forms of LpqY from Mycobacterium tuberculosis are presented at 2.2 and 1.9 Å resolution, respectively. The structural analysis, together with in silico and binding-affinity analyses, show the specificity and stereoselectivity of Mtb-LpqY for trehalose over maltose.
The crystal structure of dihydrodipicolinate synthase modified with (S)-2-bromopropionate at Lys161 is reported.
Structures of the yeast Sec14-like phosphatidylinositol transfer protein Sfh2 in complex with phosphatidylinositol and squalene reveal structural determinants for ligand recognition.
Structural and biochemical analyses of S-adenosyl-L-homocysteine hydolase from Synechocystis sp. PCC 6803 are reported.
PDB references: S-adenosyl-L-homocysteine hydrolase, cocrystallized with adenosine in the presence of Rb+, 7o5l; cocrystallized with adenosine in the presence of Na+, 7o5m; R24E/E352T mutant, cocrystallized with adenosine in the presence of Rb+, 7zd7; R24E mutant, cocrystallized with adenosine in the presence of Rb+, 7zd8; E352T mutant, cocrystallized with adenosine in the presence of Rb+, 7zd9
Open
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Microsecond melting and revitrification of cryo samples preserves the structure of embedded particles. The beam-induced motion of revitrified samples is comparable to that of conventional cryo samples.
A new software package, autoPX, for processing X-ray diffraction data from biomacromolecular crystals is introduced. It adopts several novel methods and provides adequate solutions to problems encountered at the SSRF beamlines.
Open
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This paper describes the design and assessment of CryoVR, a virtual reality-based training system for cryoEM devices. CryoVR provides a unique learning opportunity by giving users experience of cryoEM experimental procedures through a safe and accessible virtual environment.
Open
access
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Random mutagenesis at designated sites of the L-asparaginase EcAIII was combined with crystal structure analysis and AlphaFold2 predictions to dissect the enzyme-maturation and catalytic processes.
PDB references: EcAIII, wild type, 7qy6; RDM1-3, 7qtc; RDM1-8, 7qq8; RDM1-12, 7qsf; RDM1-18, 7qym; RDM1-24, 7qyx; RDM1-29, 7r5c; RDM1-37, 7qvr; RDM1-38, 7r1g