issue contents
November 2016 issue
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Cover illustration: Crystal structure of a yeast 14-3-3 protein from Lachancea thermotolerans bound to a human lipid kinase PI4KB-derived peptide (Eisenreichova et al., p. 799).
research communications
Crystal structures of a 14-3-3 protein (Bmh1) from the yeast L. thermotolerans in the unliganded form and in complex with a peptide from a human homologue (PI4KB) of its binding partner Pik1 reveal the high evolutionary conservation of 14-3-3 proteins. Indeed, the yeast 14-3-3 protein binds its human-derived ligand in a manner highly similar to that of human 14-3-3 proteins.
The crystal structure of a phosphoribosyl anthranilate isomerase from the hyperthermophilic archaeon T. kodakaraensis was determined in space groups P1 and C2 at 1.75 and 1.85 Å resolution, respectively.
The crystal structure of a triazolylthioacetamide inhibitor in complex with Verona integron-encoded metallo-β-lactamase 2 (VIM-2) is reported at a resolution of 1.50 Å. The structure shows that the inhibitor binds to the active site of the enzyme and reveals detailed information on the inhibitor interactions.
Open
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The structure–affinity relationship of meditope–cetuximab complexes is investigated by measuring their affinity using surface plasmon resonance and determining their structures using X-ray crystallography.
PDB references: cetuximab Fab, complex with CQYDLSTRRLKC meditope, 5t1m; with CQHDLSTRRLKC meditope, 5euk; with GQQDLSTRRLKG meditope, 5i2i; with GQ(2-Br-F)DLSTRRLKG meditope, 5itf; with GQ(3-Br-F)-DLSTRRLKG meditope, 5ir1; with GQ(4-Br-F)DLSTRRLKG meditope, 5iop; with CQA(Ph)2DLSTRRLKC meditope, 5t1l; with CQFDYSTRRLKC meditope, 5f88; with CQFDESTRRLKC meditope, 5etu; with CQFDQSTRRLKC meditope, 5th2; with CQFDA(Ph)2STRRLKC meditope, 5t1k; with GQFDLST(Cit)RLKG meditope, 5ivz; with GQFDLSTR(Cit)LKG meditope, 5iv2; with CQFDLSTRRQKC meditope, 5ff6
The 1.34 Å resolution crystal structure of fuculose aldolase from the psychrophilic yeast G. antarctica reveals characteristics of the enzymatic site and tolerance to cold temperature.
PDB reference: fuculose aldolase, 4xxf
Active JAK1 kinase domain was crystallized with MgADP and soaked in the presence of EDTA to allow displacement of the nucleotide by compounds of interest. This high-throughput method of structure determination may be widely applicable to other protein kinases and small-molecule ATP-competitive ligands.
B. japonicum D-sorbitol dehydrogenase is NADH-dependent. It is of interest for industrial applications because of its ability to also oxidize L-glucitol and its thermostability. Here, its structure is presented and discussed.
PDB reference: D-sorbitol dehydrogenase, 5jo9