research papers\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoJOURNAL OF
APPLIED
CRYSTALLOGRAPHY
ISSN: 1600-5767

Solid solution qu­antification from full powder X-ray diffraction profile: novel application of multivariate calibration

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aDepartment of Chemistry `Giacomo Ciamician', University of Bologna, Via Gobetti 85, 40129 Bologna, Italy
*Correspondence e-mail: [email protected], [email protected]

Edited by P. Munshi, Shiv Nadar Institution of Eminence, Delhi NCR, India (Received 13 May 2025; accepted 1 August 2025; online 4 September 2025)

Non-stochiometric crystals, such as solid solutions, represent a valid strategy for fine-tuning the properties of materials from inorganic pigments to active pharma­ceutical ingredients. The change is achieved by substitution of structurally similar compounds within the crystal structure, resulting in a minor variation of cell parameters, and it can be experimentally observed as a shift of the X-ray diffraction profile, with the shift depending on the substitutional amount. After proper alignment of the diffraction data, chemometric methods can detect the evolution of the solid solution profile and correlate it to the molar composition, creating rapid quantitative models. The solid solutions chosen for this work are NA2·FAxSA1−x and IN2·FAxSA1−x, i.e. co-crystals of nicotin­amide (NA) and isonicotinamide (IN) with fumaric acid (FA) and succinic acid (SA) in different proportions; they are used as model systems for the development of principal component regression and partial least-squares models for the quantification of solid solution composition. Different alignment strategies are presented, and the results obtained from test samples show the prediction efficacy of the proposed approach.

1. Introduction

The quest for methods that allow the modification, improvement or fine-tuning of the solid-state properties of molecular crystals, without changing the chemical nature of the molecule of interest, as in the case of active pharmaceutical ingredients (APIs), has produced in the past few decades an astonishing and still growing number of new and varied crystal forms, mainly and broadly grouped as polymorphs, molecular or ionic co-crystals, and solid solutions (Braga et al., 2022View full citation; Braga, 2023View full citation; Grepioni et al., 2022View full citation). Both co-crystals and solid solutions are formed via co-crystallization of two or more compounds that are solid under ambient conditions in their pure form but can be mixed in a reproducible way via exploitation of stabilizing noncovalent interactions (hydrogen and halogen bonds, ππ stacking, ion–dipole etc.) (Haque et al., 2023View full citation). The fundamental difference between co-crystals and solid solutions, however, is in the stoichiometric ratio of the components: while it is fixed in co-crystals, it can be varied in solid solutions, either in continuum or within defined compositional ranges.

Co-crystal formation can be controlled through rational selection of co-formers and crystallization conditions, offering new opportunities to modulate the properties of APIs while maintaining their therapeutic activity (Wouters et al., 2018View full citation). Improvements have been reported in terms of stability, solubility, bioavailability, permeability and mechanical properties, with no alteration of the pharmacological properties (Narala et al., 2021View full citation; Duggirala et al., 2016View full citation).

In the pharmaceutical field, solid solutions [or mixed crystals, as described in the seminal work of Kitaigorodsky (1984View full citation)] enable modification of drug dissolution and absorption rates (Lusi, 2018View full citation). Improvement of these properties could lead to increased drug efficacy. Improvements in thermal and mechanical properties that are crucial in tablet formation and storage are also reported (Spoletti et al., 2023View full citation). The ability to modify continuously characteristics such as solubility, dissolution rate and thermal stability makes solid solutions particularly interesting for optimizing pharmaceutical formulations (Lusi et al., 2015View full citation; Shemchuk et al., 2016View full citation; Cruz-Cabeza et al., 2018View full citation; Fonseca et al., 2018View full citation; Romasanta et al., 2017View full citation; Dabros et al., 2007View full citation). Crystal engineering of solid solutions also offers opportunities for tailoring properties of pigments and luminescent materials (Zhen et al., 2015View full citation; Newsome et al., 2019View full citation; Xu et al., 2022View full citation; Xiong et al., 2018View full citation).

In the present work we have investigated the behaviour of co-crystal solid solutions, which represent a particular case of solid solutions where a third component is added that acts as a `solid solvent' (Lusi et al., 2015View full citation; Cruz-Cabeza et al., 2018View full citation; Bruni, 1900View full citation). The third component can act as a stoichiometric coformer, while the two other components mutually substitute each other (Oliveira et al., 2008View full citation; Srisanga & ter Horst, 2010View full citation; Chen et al., 2010View full citation; Roex et al., 2007View full citation; Hasell et al., 2012View full citation). The combination of co-crystal and solid solution properties can represent a further improvement and fine-tuning in altering the properties of the molecule of interest.

Since controlling and characterizing crystalline solid forms is essential for obtaining materials with the desired properties, not only qualitative identification of different solid forms but also their quantification is needed. This aspect is crucial for quality control and regulatory compliance, especially in the pharmaceutical field, where solid formulations represent the most popular product (Shaikh et al., 2018View full citation). Therefore, the search for new methods to quantify solid forms is an active field of research, with multiple techniques employed from X-ray diffraction (XRD) (Zappi et al., 2019View full citation) and spectroscopy (Kassouf et al., 2024View full citation) to thermal analysis and solid-state NMR.

Tao et al. (2025View full citation) reviewed the newest quantitative method­ologies, primarily focused on phase quantification of different components inside a mixture. However, in the presence of solid solutions, changes in composition happen within a single crystallographic structure and, due to the modulation of physicochemical properties, determination of the relative composition of the material can be of interest. Powder X-ray diffraction (PXRD) represents a particularly relevant methodology when dealing with continuous systems such as solid solutions, where the similar chemical properties of the constituent elements could make traditional analytical methods ineffective. The theoretical foundation of this application is based on the possibility of detecting lattice parameter variations caused by the substitution of one component for a second one in the crystalline unit cell. Vegard's law (Denton & Ashcroft, 1991View full citation) establishes a linear relationship between lattice parameters and composition, expressed as a molar fraction, with changes in the lattice parameters causing peak shifts in the diffraction profiles (d'Agostino et al., 2018View full citation). Although the progression observed experimentally can diverge from ideal linearity, this law provides a reliable framework for quantitative determinations based on PXRD, as shown in cases for which conventional analytical techniques could not be successfully employed to discriminate between constituent species (Cherin, 1973View full citation).

Rietveld and Pawley refinements, within the traditional PXRD approach of pattern-fitting methods, provide detailed structural information, including lattice parameters, and can be used for the characterization of solid solutions, tracing the changes in the crystal structure (Hurle et al., 2022View full citation; Kobayashi et al., 2024View full citation). Only a limited number of examples, however, have been reported in the literature for quantification of solid solution composition by these methods (Vogrin et al., 2019View full citation), and they also rely on the availability of known crystal structures for all the phases involved.

Multivariate analysis (MA) is becoming a strategic tool for quantitative determinations (Tao et al., 2025View full citation) and it is finding application to diffraction data, constituting a powerful complementary tool for crystalline materials characterization (Lopresti et al., 2023View full citation; Macchietti et al., 2024View full citation; Yuan et al., 2024View full citation). Dedicated software is also available, combining XRD data treatment and MA calculations (Barr et al., 2004View full citation; Caliandro & Belviso, 2014View full citation). Principal component analysis (PCA) and partial least-squares (PLS) regression can be employed to transform complex data sets into meaningful information: PCA enables visualization of complex data structures by reducing dimensionality while preserving essential variance information, facilitating pattern recognition and outlier detection in crystalline samples; PLS regression establishes quantitative relationships between analytical data and phase composition, allowing for accurate determination of crystalline phases even in complex mixtures (Rajalahti & Kvalheim, 2011View full citation). Advantages of the MA approach include the possibility of data analysis in the absence of crystallographic reference data or familiarity with profile-fitting techniques, as well as providing automated calculations suitable for big data analysis or further integration into multi-step algorithms.

Within this framework we propose a quantitative multivariate approach to evaluate solid solution compositions from experimental PXRD profiles, employing principal component regression (PCR) and PLS to enhance the linear correlation depicted by Vegard's law. To this end, we re-prepared via mechanochemistry the known co-crystal solid solution of isonicotinamide (IN) with fumaric acid (FA) and succinic acid (SA), IN2·FAxSA1−x (IN-SS in the following, Fig. 1[link]) (Oliveira et al., 2008View full citation), selected as a test model for our quantification procedure. As a second step, we synthesized and analysed the analogous new co-crystalline system with nicotinamide (NA), NA2·FAxSA1−x (NA-SS in the following, Fig. 1[link]), which turned out to be different from the isonicotinamide structure, as in this case only partial miscibility of SA and FA was observed. The solid solution behaviour was investigated and characterized by PXRD, Pawley refinement and differential scanning calorimetry (DSC). Our results show how chemometrics, combined with PXRD data and an appropriate alignment strategy, can provide robust quantitative models and help in highlighting features of solid solution profiles.

[Figure 1]
Figure 1
Molecular structures of the compounds used for the solid solution model systems.

2. Experimental

2.1. Materials

NA, IN, SA and FA were purchased from Sigma–Aldrich and used without further purification.

2.2. Solid solution syntheses

The known IN-SS co-crystal, with formula IN2·FAxSA1−x (Oliveira et al., 2008View full citation), shows complete solubility of FA and SA in the whole compositional range (0 < x < 1). Samples for model training were prepared with FA molar fractions (referred to only as fraction hereinafter) in the range 0−1, in 0.2 increments, while control samples for model validation were prepared with FA fractions of 0.3, 0.5 and 0.7. All products were obtained via mechanochemical synthesis by liquid-assisted grinding (LAG) (Ying et al., 2021View full citation). IN, FA and SA were weighed at the correct molar ratio to a total weight of 200 mg and loaded inside a 5 ml ball-milling steel jar with two steel spheres of 5 mm. Ethanol (50 µl) was added to facilitate the conversion. A Retsch MM 200 ball-milling apparatus was used, operating at 25 Hz for 30 min.

Analogous solid solutions of formula NA2·FAxSA1−x, NA-SS, were also prepared, with NA replacing IN. As partial solubility of FA and SA was observed, the FA fraction (x) was varied only in the 0−0.6 compositional range. Samples for the quantitative model were obtained via LAG, with a procedure similar to that used for the IN-SS co-crystals, but with the milling time increased to 60 min to ensure consistent completeness. Due to the limited miscibility, model validation was tested only for the NA2·FA0.3SA0.7 and NA2·FA0.5SA0.5 compositions.

2.3. NA-SS characterization

The formation of solid solutions for the NA co-crystals was verified by thermal analysis and unit-cell parameter calculations via Pawley refinement. DSC was performed with a TA Instruments Q10 apparatus fitted with a standard DSC cell, equipped with a Discovery Refrigerated Cooling System (RCS90, TA Instruments) under a nitro­gen atmosphere (purge flow 20 ml min−1). The samples (3–8 mg) were placed in aluminium pans. All samples were cooled to 0°C and then heated to 170°C. Pawley refinement was performed with the software TOPAS (Version 5; Coelho, 2018View full citation). A Chebyshev function with two parameters was used to fit the background and a pseudo-Voigt function was used for the peak profile.

2.4. PXRD

Diffractograms used for Pawley refinement were recorded in Bragg–Brentano geometry for each selected composition of NA2·FAxSA1−x (x = 0, 0.2, 0.4 and 0.6) on a PANalytical X'Pert Pro automated diffractometer equipped with an XCelerator detector using Cu Kα radiation (λ = 1.5418 Å) in the 4–60° 2θ range with four scans (continuous scan mode, step size 0.0167°, counting time 40.005 s, Soller slit 0.04 rad, antiscatter slit 1/2, divergence slit 1/4, 40 mA, 40 kV).

Diffractograms used for the manual alignment data set of both NA-SS and IN-SS systems were recorded on a PAN­alytical X'Pert Pro in the 4–40° 2θ range (continuous scan mode, step size 0.0334°, counting time 50.165 s, Soller slit 0.02 rad, antiscatter slit 1/2, divergence slit 1/4, 40 mA, 40 kV). An internal standard was added to the IN2·FAxSA1−x samples to align the pattern correctly and compensate for the 2θ shift due to experimental sample displacement. Before each measurement, finely ground NaCl (20 mg) was mixed with 80 mg of solid solution. In the case of the NA system, the alignment was first tested with the use of an internal standard. After the identification of a low-angle peak, constant for all solid solution compositions, all acquisitions were carried out on clean samples without further addition.

The same IN-SS samples, containing NaCl as internal standard, were also measured on a PANalytical Empyrean automated diffractometer using Cu Kα radiation (λ = 1.5418 Å) in the 4–40° 2θ range. The instrument, operating at 40 kV/40 mA, was equipped with Bragg–Brentano HD optics. A PIXcel3D area detector was used for data collection [continuous scan mode, step size 0.0263°, counting time 46.655 s, incident beam Soller slit 0.03 rad, diffracted beam Soller slit 0.02 rad, divergence slit (incident beam) 1/4, antiscatter slit (diffracted beam) 1/4]. Samples were placed inside a quartz sample holder and aligned with respect to the zero of the goniometer, using the XYZ sample stage and its auto-alignment function.

2.5. Data analysis

2.5.1. Pretreatment and alignment
2.5.1.1. Manual alignment

Background correction was applied to all diffractograms prior to any other operation. Background correction and manual alignment were performed with the X'Pert High Score Plus software (PANanlytical). Diffractogram alignment was carried out using the correct displacement function, since it returns an adjusted pattern with the same 2θ coordinates as the original acquisition, a necessary requirement for the subsequent matrix operations. For each data set one acquisition was selected as a reference pattern. For all subsequent samples the 2θ shift (Δ2θ) of the identified alignment peak was estimated, with respect to the reference sample, through the adjust to anchor option. Δ2θ was then converted into sample displacement (s) by equation (1)[link] (Parrish & Langford, 2006View full citation), with R being the goniometer radius:

Mathematical equation

Lastly, the estimated s value was inserted into the correct displacement function and an adjusted profile was obtained. The nicotinamide co-crystal acquisitions were aligned with respect to the first low-angle peak at 6.3° 2θ, while the isonicotinamide profiles were aligned with respect to the main NaCl peak at 31.7° 2θ.

2.5.1.2. Automated alignment

Alternatively, pattern pretreatment was integrated into the Python script used for the chemometric calculation (see Section 2.5.3[link]). Background correction was implemented with the SNIP algorithm (Ryan et al., 1988View full citation), while for the alignment a simplified version of the alignment by peak correspondence presented by Guccione et al. (2018View full citation) was used. Detection of the relevant peaks was carried out through the find_peaks function (see also Section 2.5.2[link]) from the SciPy library (Virtanen et al., 2020View full citation), setting the prominence and width parameters to values that ensured a constant identification of peaks. Reproducibility is needed to match the alignment peak correctly between the reference and nth sample during the correspondence step. This second step was simplified, since the 2θ correction needed for solid solution alignment requires only the correspondence of the alignment peak; Δ2θ was calculated as the difference between the positions of the alignment peak in the first and nth samples, and then used to shift the 2θ axis of the nth sample accordingly. Lastly the corrected profile was interpolated to resample it at the original 2θ values, needed for the chemometric calculation. The methodology used for the definition of the peak position and its impact on the alignment are detailed in the results, Section 3.1.4[link], and in the supporting information (Section S2).

2.5.1.3. Instrumental alignment

Acquisitions carried out on the Empyrean diffractometer were corrected only for background. Due to the instrumental alignment of the sample-stage position, no further correction of the diffractograms was needed, and the alignment of the reference peak was only verified by visual inspection of the data before construction of the final data set.

2.5.2. Peak position analysis

Statistical analysis of peak positions was carried out on the raw experimental diffractograms, as opposed to a fitted profile, to observe the variability present in the chemometric data. The peak identification algorithm developed for the automated alignment method was employed for this purpose. The find_peaks function was optimized in its parameters to allow the identification of 13 main peaks for nicotinamide. The 2θ value corresponding to the middle point of the peak width, calculated at 80% of the peak height, was taken as the peak position (the peak height percentage will be referred to as level from the baseline, as commonly considered, while the find_peaks function expects the value as a fraction from the peak). The average value of three samples for each solid solution composition and the associated standard deviation were determined.

2.5.3. Multivariate analysis

Data sets were composed of XRD profiles of solid solutions at different SA/FA compositions, corrected for background and aligned if needed (Section 2.5.1[link]). When the internal standard was present in the acquisition the corresponding 2θ range was excluded from the calculation, since the NaCl peak is not relevant for the solid solution progression; a potential intensity variation of the standard could also incorrectly influence the model. The training set contained a total of 12 samples for the NA-SS system (three independent syntheses of four increasing FA fractions: 0, 0.2, 0.4 and 0.6) and 18 samples for the IN-SS co-crystals (three independent syntheses of six fractions: 0, 0.2, 0.4, 0.6, 0.8 and 1). The expected FA fraction was used as a response to the regression model.

Before any matrix operation, the XRD profiles were normalized to remove the variability in intensity associated with sample preparation. Area (Caliandro et al., 2013View full citation) or maximum (Urbano-Cuadrado et al., 2008View full citation) normalizations were tested.

PCA (Blanco Romía & Alcalà Bernàrdez, 2009View full citation) was used for a preliminary exploration of all data sets to verify the presence of sample clustering on the basis of the FA content. If separation was satisfactory, a quantitative regression model was developed. For the NA-SS set, the high informativity observed for PC1 allowed for single-component PCR (Blanco Romía & Alcalà Bernàrdez, 2009View full citation) as a quantitative model. Instead, the PLS method (Wold et al., 2001View full citation) was used on the IN-SS data. Mean centring was applied prior to both PCA and PLS calculations.

All chemometric calculations were performed with Python (Version 3.11.7) scripts (Anaconda Software Distribution, Version. 2-2.4.0, https://anaconda.com) with PCA and PLS calculation based on the scikit-learn package (Pedregosa et al., 2011View full citation).

Component selection for the PLS models was performed by evaluating the root-mean-square error in cross validation (RMSECV) (Wiklund et al., 2007View full citation) of the increasing n-factor models:

Mathematical equation

Leave one out cross validation was performed. The factor number (A) associated with the minimum error was considered, after evaluation of the loadings profile to verify the significance of all selected factors. The calibration error of the final model was then evaluated according to

Mathematical equation

Here, N is the number of calibration samples, yobs,i is the observed response for the ith sample, and Mathematical equation and Mathematical equation are the associated prediction in cross validation with A components and in calibration, respectively.

Lastly, the prediction ability of the models was evaluated with test sets composed of samples with FA fractions of 0.3 and 0.5 for the NA-SS crystals and 0.3, 0.5 and 0.7 for the IN-SS system. Each composition was tested in duplicate with independent synthesis. The prediction error for an observation o was calculated according to

Mathematical equation

for the NA-SS model, since the proposed PCR model with only one component was considered equivalent to a univariate regression. In this instance RMSEC is the calibration error of the model [equation (3)[link]], b represents the slope of the univariate regression, M is the number of measurements performed on the observation, To is the associated PC1 score and Mathematical equation is the average PC1 score of the calibration set. A comparison with the multivariate approach confirms a comparable estimation of the error.

We stress that the evaluation of prediction uncertainty for multivariate models is still an open topic and no standard formula has been defined; both Zhang & Garcia-Munoz (2009View full citation) and Giussani et al. (2024View full citation) cite the reduced formula proposed by Faber & Kowalski (1996View full citation) [equation (5)[link]] as a good solution for the estimation of multivariate variability, under the assumption that the signal measurement errors and the measurement error in the reference concentration can be neglected (Giussani et al., 2024View full citation). This approach was applied, for example, by Skou et al. (2017View full citation). The assumptions required for the validity of the formula were considered satisfactory, as the current work is focused on a feasibility study; therefore prediction errors for the PLS models were calculated according to

Mathematical equation

where ho = Mathematical equation is the leverage for an individual observation o, ro is the respective mean centred predictor vector, WA is the PLS weight matrix of the A components and N is the number of calibration samples. The term 1/N is due to mean centring.

3. Results and discussion

The aim of the present work is to assess the feasibility of a chemometric approach (i) to quantify the composition of a solid solution and (ii) to investigate the issues related to the use of PXRD data for this type of application. Solid solutions selected as model systems were obtained by reaction of IN with both FA and SA, which independently form isostructural co-crystals with isonicotinamide in the 2:1 stoichiometric ratio; reaction of IN with FA and SA was reported by Oliveira et al. (2008View full citation) to yield the solid solution IN2·FAxSA1−x (IN-SS) with complete miscibility of FA and SA over the whole composition range. The change from the single –CH2—CH2– to the double –CH=CH– bond in the di­carb­oxy­lic acids does not significantly alter the steric requirements of the molecule, thus allowing for continuous replacement of one acid by the other with a small change in the crystal structure. No conformational change is observed between the two limit structures, despite the higher degrees of freedom of the single bond, ensuring isostructurality and facilitating substitution and full miscibility. The IN-SS system will be presented in the second section of this work, covering the internal standard and instrumental alignment combined with the PLS quantitative models.

In order to prove the robustness of our analytical model applied to solid solutions, we also investigated the behaviour of nicotinamide, an isomer of isonicotinamide, which is known to form co-crystals with both SA [CSD (Cambridge Structural Database, https://www.ccdc.cam.ac.uk/) refcode DUZPAQ, 2:1 stoichiometric ratio; Thompson et al., 2010View full citation] and FA (CSD refcodes EDAPOQ and NUKYAU for the 2:1 and 1:1 stoichiometric ratios, respectively; Orola & Veidis, 2009View full citation; Karki et al., 2009View full citation). Solid solutions of formula NA2·FAxSA1−x (NA-SS), containing NA and both co-formers SA and FA, were prepared, but in this case limited solubility was observed, and only solid solutions in the 0 < x < 0.6 range could be obtained. This might be expected as the two extremes, i.e. NA2·FA and NA2·SA, are not isostructural, as is the case with the iso­morphous isonicotinamide co-crystals IN2·FA and IN2·SA (Fig. 2[link]).

[Figure 2]
Figure 2
Relevant hydrogen-bonding interactions directing the packing arrangements in isomorphous/isostructural IN2·FA and IN2·SA (Aakeröy et al., 2002View full citation) (top) and in non-isostructural NA2·FA (Orola & Veidis, 2009View full citation) and NA2·SA (Thompson et al., 2010View full citation) (bottom) [carbon atoms in grey (IN and NA), orange (FA) and violet (SA)].

3.1. Nicotinamide and succinic acid/fumaric acid solid solution NA2·FAxSA1−x (NA-SS)

3.1.1. Solid solution characterization

Powders of NA-SS were obtained via mechanochemistry as described in Section 2.2[link]. The XRD patterns show a constant profile (Fig. 3[link]) with no visible traces of the starting materials, matching the pure NA2·SA pattern up to an FA content of 0.6, suggesting the formation of a solid solution. As a further verification, DSC analysis was performed, showing a single endothermic event and a linear progression of the melting point (Fig. 4[link]) consistent with the formation of a single phase with modulated physical properties, as with the case of solid solutions. The incomplete curve observed for the 0.6 FA sample was due to the degradation of the material, which forced the interruption of the measurement. This behaviour suggests a higher instability of the structure at this composition, consistent with the limit of miscibility that was observed for the system by PXRD.

[Figure 3]
Figure 3
Experimental PXRD patterns (solid lines) for the solid solutions NA2·FAxSA1−x (NA-SS) as obtained by ball-milling synthesis. For comparison, calculated patterns from single-crystal data are also shown (dashed lines) for the pure co-crystals NA2·SA (bottom, data collected at 120 K, CSD refcode DUZPAQ; the difference between the acquisition temperature and the room-temperature experimental data is responsible for the shift observable at higher 2θ) and NA2·FA (top, CSD refcode EDAPOQ).
[Figure 4]
Figure 4
(a) DSC profiles for NA-SS (x = 0, 0.2, 0.4 and 0.6). (b) Scatter plot showing the linear behaviour of the melting peak values, taken from the DSC traces on the left, versus the FA molar fraction x.

The effect on the cell parameter values was assessed via Pawley refinement. Fig. 5[link] shows the gradual variation in cell parameters accompanying the increasing fraction of FA, as is expected for solid solutions. The crystallographic b axis and α angle are those most affected by the substitution, with the b length expanding up to 0.05 Å for x = 0.6 (FA fraction) and the α angle increasing by 0.24° (additional data in Section S6). The expansion of the unit cell is at the basis of the possibility of tracing the solid solution composition through the PXRD profile: as a consequence of variations in cell parameters, shifts in the peak 2θ values are also observed, which can be used as signals for the quantitative model.

[Figure 5]
Figure 5
Plots of selected unit-cell parameters (b and c lengths, and the α angle) resulting from Pawley analyses of PXRD profiles collected for NA-SS at different values of the FA molar fraction x. Error bars correspond to errors returned by the fit.
3.1.2. Alignment method selection

Cell parameters are not the only factors influencing the peak positions; some experimental factors, such as sample displacement and sample transparency (Parrish & Langford, 2006View full citation), can also affect peak position, potentially interfering with the signal under examination. While Pawley and Rietveld refinements evaluate peak positions via profile fitting and are able to compensate for experimental factors with specific coefficients, a chemometric calculation, applied directly to the raw experimental data, requires an alignment strategy to compensate for the experimental variability. One possibility for alignment is of course data acquisition in transmission, while in Bragg–Brentano geometry (i.e. the commonly available reflection geometry for standard laboratory instrumentation) the primary source of the 2θ shift, expressed by equation (1)[link], is from the sample surface not being tangential to the focusing circle. Evidence of this can be found in the profiles shown in Fig. 6[link], where acquisitions from three solid solution compositions are compared for the NA-SS system mixed with NaCl.

[Figure 6]
Figure 6
Experimental patterns of three NA-SS samples (x = 0, 0.2 and 0.4) with the addition of the internal standard NaCl. (a) Before manual alignment. (Left) Full patterns and (right) detail of the two peaks highlighted by the black rectangle, belonging to (top) the solid solution profile and (bottom) the NaCl profile. (b) After manual alignment. From left to right: solid solution peaks at 6.3° and 15.2°, and peak from internal standard NaCl.

While we expect continuous peak shifts based on solid solution compositions, the 2θ values of the NaCl peaks are expected to remain constant if the sample is correctly aligned. Therefore, the most intense peak of NaCl [2θ = 31.7°, Fig. 6[link](a)] can be used as an internal reference to verify the presence of sample displacement for all measurements. Fig. 6[link](a) shows a comparison of untreated acquisitions, evidencing an incorrect progression of the solid solution peaks (top) and an evident divergence of the NaCl peak for all three samples (bottom). If the NaCl peak of the 0 and 0.2 curves (blue and orange lines respectively) is properly shifted to its ideal value, as shown in Fig. 6[link](b), the expected progression of the solid solution appears, as shown in the 2θ peak at 15.3° in the middle of the figure. Note that the Δ2θ correction for each aligned pattern was not larger than 0.1° which, from equation (1)[link], corresponds to a deviation of about 0.2 mm of the sample surface from the ideal position, i.e. tangential to the focusing circle. Even with extremely careful sample preparation it is not an easy task to maintain such control of the sample holder filling, especially in this specific case, as the limited expansion of the cell due to formation of the solid solution causes shifts of the order of 10−2° (see below), thus sensitive to a displacement of the sample surface of 10−2 mm. Therefore, PXRD measurements in reflection require an alignment strategy for the purpose of quantitative applications. For the nicotinamide system the alignment with NaCl revealed the presence of a characteristic peak not affected by the solid solution progression, corresponding to the first reflection at 2θ = 6.3°; as shown in Fig. 6[link](b) (left), all fractions appear aligned at this value. The low-angle peak was thus considered as the reference peak for the alignment and no internal standard was further added to the samples. The alignment procedure of the final data set was verified by observing the overlap of the reference peaks, which was consistent for all samples (Fig. S1). In Fig. 7[link](a) a selection of peaks are reported (with more in Fig. S1), showing the expected progression of the 2θ shift with good overlap between replicates, which indicates reproducibility of the synthesis and method of analysis. Statistical analysis carried out on the profiles returned a mean standard deviation of the 2θ peak positions of 0.006° (evaluated for the first 13 peaks of the profile, Table S1). Moreover, considering the peak mean position for each fraction, it was possible to estimate the magnitude of the shift, resulting in a 2θ mean value of 0.03° per step over 13 peaks (full data available in the supporting information, Section S1).

[Figure 7]
Figure 7
(a) Detail of experimental patterns of the solid solution NA-SS (x = 0, 0.2, 0.4 and 0.6), showing peaks affected by a shift (top and centre) or progressive change (bottom) according to the FA:SA ratio. (b) Score plot (PC1 versus PC2) of the full NA-SS data set after manual alignment.
3.1.3. Multivariate analysis (PCA and PCR)

Once a data set had been prepared as described in Section 2.5[link], an exploratory analysis of both training and test samples was first carried out with PCA to test the ability of a multivariate analysis to observe the progression of the solid solutions. In Fig. 7[link](b) the score plot of the first two components is reported, where an evident progression of the samples depending on their composition is observed. The desired separation occurs along the PC1 direction, with samples aligning at specific PC1 values according to their FA content: higher values of fumaric fraction correspond to negative PC1 scores. In contrast, PC2, while contributing 12.22% of the explained variance, does not appear significant for the desired characterization. Confirmation of this can be found on the loadings plot, where the contribution of the 2θ angles to the separation can be identified. In Fig. 8[link] the PC1 loading profile is compared with the original diffractogram, and a distinctive trend is visible where characteristic peaks in the PXRD pattern correspond to a split peak in the loadings: the left side contributes to a negative loading and the right side to a positive loading. This behaviour matches closely the experimental solid solution shift, where at higher FA content the peaks are found at lower 2θ angles (shifted to the left), while with lower FA content the PXRD profile is shifted to the right. As a result, PC1 scores decrease accordingly with the increase in FA. In contrast, the PC2 loadings profile (Fig. S8) shows a non-characteristic split and matches the PXRD profile, therefore accounting for experimental variability, assigning negative values to a general increase in intensity.

[Figure 8]
Figure 8
PC1 loadings plot (red solid line) from PCA analysis of the full NA-SS data set compared with the original PXRD profiles (blue dashed line). (a) Full profile and (b) detail of the 14.5–19° 2θ range, highlighted by the black rectangle in the full profile.

The high informativity of PC1 (i) allows for a rapid identification of the solid solution behaviour, since a wider peak split of the loadings is related to a higher shift in the XRD profile (more details in Section S1), and (ii) can provide an easy approach for a quantitative model where the PC1 score is correlated with the solid solution composition. The steps of the PCR model, built using the training data set (three replicates of x = 0, 0.2, 0.4 and 0.6), were the following. First the PCA calibration model was built (Fig. S9), which maintained analogous features to those observed for the full data set; the resulting PC1 scores were correlated to the FA fraction in a univariate linear regression. The obtained regression line [Fig. 9[link](a)] has intercept 2.74 ± 0.06, slope −0.82 ± 0.02 (significance 0.05), R2 0.995 and RMSE 0.05. The model was then tested for its prediction ability using control samples with FA contents of 0.3 and 0.5, each from two independent syntheses. A comparison of the obtained values (0.27 ± 0.03, 0.29 ± 0.03, 0.50 ± 0.03 and 0.50 ± 0.03) with the expected values on the bar plot in Fig. 9[link](b) shows that the model is able to correctly identify the solid solution composition. The dark-blue series in Fig. 9[link](b) instead shows the results obtained with a three-component PLS model. Both the prediction and standard deviation of the PCR model are well matched, supporting the validity of the simpler approach and the univariate method for error estimation.

[Figure 9]
Figure 9
(a) One-component PCR regression line (PC1 versus FA fraction) for the NA-SS data set. (b) Comparison of predicted FA fraction obtained with PCR regression in panel (a) (light blue) and a full multivariate PLS model with three components (dark blue) relative to control samples with expected FA fractions of 0.5 (S1 and S2) and 0.3 (S3, S4). Expected composition is plotted as a reference in red.
3.1.4. Automatic alignment (Python)

To explore the possibility of a fully automated model, background correction and alignment were further integrated in the Python script (Section 2.5.1[link]). Comparable results to those of the manual procedure were obtained once the correct alignment strategy was identified, which consisted of two main steps: (i) detection of the reference peak, requiring a constant mapping of the profile for correct location of the alignment peak and its 2θ position within all samples, and (ii) definition of the alignment method, sensitive to the peak shape.

For the NA-SS data set the reference peak is the first in the profile and this simplified the initial step, whereas for the IN-SS data set, where the reference peak is further along the pattern, an optimization of the prominence and width parameters of the find_peak function can be necessary to match the alignment peak correctly in all samples.

The second step was more critical. For the alignment correction the 2θ difference between the position of the reference peak in the first sample and the subsequent patterns is calculated so that the second profile can be shifted accordingly; for this reason, determination of the peak position is essential to the procedure. The find_peaks function returns by default the position of the point with maximum intensity which, due to experimental noise, often does not correspond to the centre of the peak, causing an incorrect alignment (examples are shown in Section S2). To detect the centre of the peak correctly, the middle point of the peak width was considered; this, however, can be affected by an asymmetry in the peak shape (Fig. S5). The peak width was then evaluated at different heights: a value of 80% was found to allow an alignment similar to that obtained via the manual procedure. The impact of the peak detection can be seen in Fig. 10[link], where the models [Fig. 10[link](a)] and prediction results [Fig. 10[link](b)] are compared for the manual (blue) and automated alignment procedures (red). Data for the automated method correspond to peak detection at the maximum point and at 50% and 80% of the height. The first two methods show a higher variability in both the model and the control sample predictions, while the 80% height gave results comparable to the manual results.

[Figure 10]
Figure 10
(a) Comparison of regression models resulting from the NA-SS calibration data set after different alignment strategies. Regression relative to the manual procedure (blue) on the left-hand side as reference; regressions resulting from automated alignment (red) follow, with peak position calculated as (from left to right) the point of maximum intensity, the middle point of width at half-height and the middle point of width at 80% of peak height. (b) Comparison of the predicted FA fraction returned by the regression models in Fig. 8(a) for the four control samples tested. The first series (yellow) shows the expected concentrations.

3.2. Isonicotinamide–succinic acid/fumaric acid (IN-SS)

Given the satisfactory results obtained with the NA-SS system, the quantitative approach was further tested on the isonicotinamide solid solution IN2·FAxSA1−x (IN-SS) which presents a full range of miscibility. Due to the characteristics of the diffraction pattern, in this case different alignment strategies were adopted. The PXRD profile obtained for the compound is reported in Fig. 11[link](a); it matches the calculated pattern (CSD refcode LUNNUD; Aakeröy et al., 2002View full citation) except for the peak from NaCl (outlined with a blue rectangle), which was added to the sample for the preliminary alignment. The profile is characterized by fewer high-intensity peaks and no significant reflections are present before 15° 2θ. This condition reduces the possibility of finding peaks not affected by the cell expansion and suitable as reference for the alignment. In Fig. 11[link](b) the progression of the aligned XRD profiles at different compositions is reported, and a shift is noticeable for all main peaks, as highlighted by the vertical lines. Only the reflection at 18.1° 2θ appears less influenced by the progression, but the characterization presented in the original paper on the calculated patterns (Oliveira et al., 2008View full citation) also shows a contribution of the expansion on this peak, so it was excluded as a reference. In Fig. 11[link](c) the detail of the NaCl peak is reported as evidence of the correct alignment. Since no element of the solid solution profile was unaffected by the transformation, NaCl was adopted as an internal standard and maintained for the development of the quantitative model.

[Figure 11]
Figure 11
Experimental PXRD data for the IN-SS data set after manual alignment. (a) Comparison of the experimental profile (solid line) with the calculated pattern from single-crystal data (dashed line). The pattern calculated on the basis of single-crystal data (CSD refcode LUNNUD, data collected at 173 K), shifted as a result of cell thermal contraction with respect to ambient conditions (see the supporting information), was optimized with the AutoFidel algorithm (Mercury program from the Cambridge Crystallographic Data Centre; https://www.ccdc.cam.ac.uk/solutions/software/mercury/; Macrae et al., 2020View full citation). The NaCl peak, used as internal standard, is highlighted with the blue rectangle. (b) Details of the 15–28° 2θ range of the experimental patterns of solid solutions with increasing FA fraction (x). The vertical red lines help trace the shift affecting the peak positions. (c) Detail of the NaCl peak.

The IN-SS samples were also analysed with the Empyrean diffractometer equipped with the XYZ sample stage (Section 2.4[link]); this setup was able to correct the displacement of the sample holder by finely adjusting, with a laser sensor, the Z coordinate of the sample stage. These measurements were used to build a second data set that, thanks to the instrumental alignment, did not require any additional 2θ correction. The samples used in this case were the same ones containing the internal standard so as to give a rapid verification of the correctness of the alignment. In Fig. S7 the full data set and the NaCl peak detail are reported.

3.2.1. Quantitative model (PLS)

PCA exploratory analysis was first carried out on the two IN-SS data sets [Fig. 12[link](a) and Fig. S11]. The solid solution progression was visible in both sets, pointing to a good alignment, but the PC1 component was not solely responsible for the separation; the PC2 direction also appeared relevant. The samples are aligned along the x axis but form distinct clusters along the y direction, with the intermediate fractions found at negative PC2 values and the pure co-crystals placed at high positive scores. Loadings plots (full data in Fig. S10) confirm the observations: the PC1 profile shows the characteristic peak split feature [Fig. 12[link](b)] observed with the previous system, but the PC2 component also presents a similar trend [Fig. 12[link](c)], in which the central contribution of the peak is assigned to negative loadings and the edges to a positive value. Therefore both components appear related to the 2θ shift, suggesting a more complex evolution of the XRD profile that is not easily represented by a single component; the higher complexity could be due to the full miscibility of the system, causing a higher 2θ shift across the sequence and so a higher total variability. Since more than one principal component was needed to describe the system, the PCR approach was not considered for the quantitative model, but a PLS regression was chosen instead. The PLS algorithm searches for component directions while maximizing the correlation with the response, making for a more robust quantitative model.

[Figure 12]
Figure 12
(a) Score plot (PC1 versus PC2) of the IN-SS calibration set (manual alignment). Details of the relative loadings plots for PC1 and PC2 are reported in panels (b) and (c), respectively (red solid lines), and compared with the experimental XRD profile (blue dashed lines) (see Fig. S10 for the full loadings profiles).

The PLS model was then evaluated (Section 2.5.3[link]), presenting very similar features for both data sets: despite the main contribution to the explained variance being found in the first factor (97%), the lowering of the error in cross validation (CV) appears significant up to the fifth and sixth factors for the manual and Empyrean data sets, respectively. The loadings plots show a variation of the split peak trend, with low noise contribution, for all selected components, pointing to the relevance of all factors (Fig. S12). Therefore, a five-factor model was selected for the manual data set [Fig. 13[link](a)] having an RMSECV of 0.0395 and a good correlation: R2 values were 0.998 and 0.986 for calibration and CV, respectively. The parity plot in Fig. 13[link](b) corresponds to the six-component model of the instrumental alignment data set, associated with an RMSECV of 0.0356, with R2 of 0.999 in calibration and 0.991 in CV.

[Figure 13]
Figure 13
Parity plots of the final IN-SS PLS model from (a) the manual alignment and (b) the instrumental alignment data sets.

Lastly, model validation was carried out on control samples with 0.3, 0.5 and 0.7 FA fractions. Fig. 14[link] reports comparisons between predictions obtained with the two PLS models, showing good agreement between the two alignment techniques. The manual alignment is related to a slightly higher variability in the prediction with a mean prediction error of 0.05, versus 0.03 for the instrumental alignment; since the main contribution to the error is given by the residuals in the calibration, it is reasonable to observe a higher inaccuracy from the manual approach. However, the predicted values appear comparable for all samples, agreeing with the expected concentration for both 0.3 and 0.5 fractions (S1, S2, S3, S4), while the 0.7 samples (S5, S6) are underestimated by both models. On closer inspection of the aligned diffractograms [Fig. 15[link](b)], both 0.7 samples appear aligned with the 0.6 fraction, instead of being positioned in between the 0.6 and 0.8 fractions as expected, while, for example, the 0.5 fraction is correctly found between the 0.4 and 0.6 samples [Fig. 15[link](a)]. This observation suggests that the underestimation of the predictions is due to the sample and not to any limited prediction capability of the models; from the model perspective, the result of the prediction is not incorrect, since the profile evaluated is indeed indistinguishable from the 0.6 fraction sample. Since this characteristic is observed for two independent syntheses, it can be hypothesized that the behaviour is not due to experimental error, either in the synthesis or in the acquisitions; data from the original characterization of the system (Oliveira et al., 2008View full citation) also showed a variability in the progression between fractions 0.5 and 0.7, suggesting that, in that compositional range, unit-cell parameter modifications and related peak shifts could be less evident. This condition could influence the model accuracy for the specific system but, for a more general evaluation of the approach, the discrepancy in the prediction should not be regarded as a flaw in the methodology: as long as progression in the profile is present, it is possible to predict the sample composition correctly.

[Figure 14]
Figure 14
Comparison of predictions from the manual (light blue) and instrumental (dark blue) alignment models for six control samples of the IN-SS system. The expected FA content (red) was 0.3 for samples S1 and S2, 0.5 for samples S3 and S4, and 0.7 for samples S5 and S6.
[Figure 15]
Figure 15
The 17.3° 2θ peak from experimental PXRD patterns of control samples (dashed lines) and calibration data (solid lines) for the IN-SS manual data set. (a) Control samples with 0.5 FA (S3, S4) and calibration samples with 0.4 and 0.6 FA. (b) Control samples with 0.7 FA (S5, S6) and calibration samples with 0.6 and 0.8 FA.

4. Conclusions

In this work a multivariate analysis approach was tested to predict solid solution composition using PXRD data. We have shown how PCA analysis of full PXRD profiles is able to detect the characteristic profile shift induced by cell expansion, revealing a sensitivity of the method to the subtle modifications caused by changes in solid solution composition, and have presented PCA as a tool for the easy identification of distinctive features of the powder pattern. Moreover, it was possible to calibrate the profile shift with multivariate linear regression methods, like PCR and PLS, showing the feasibility of developing quantitative models able to predict the composition of unknown solid solution samples from XRD profiles.

To prove the robustness of the approach, the methodology was tested on two organic solid solution systems obtained from the substitution of succinic acid with fumaric acid in the co-crystals they form with isonicotinamide (IN2·FAxSA1−x, IN-SS) or nicotinamide (NA2·FAxSA1−x, NA-SS) as co-former. The NA-SS system was here reported for the first time and characterized as a solid solution by PXRD, DSC and Pawley refinement. Good model statistics and prediction results were obtained in both cases, supporting the feasibility of the methodology proposed.

Diffraction patterns acquired in Bragg–Brentano geometry were used for all calculations, presenting an easy experimental procedure that only required caution in considering the experimental shift due to sample displacement. Different alignment strategies were proposed to tackle the problem, from the identification of unaffected reflections to the use of an internal standard or instrumental alignment. The best strategy was chosen on the basis of the specific profile characteristics, and in all cases allowed for the correct identification of the progression and the building of the model. The alignment procedure has been presented as both a manual pretreatment and an automatic analysis integrated into the chemometric calculation.

Supporting information


Acknowledgements

Open access publishing facilitated by Universita degli Studi di Bologna, as part of the Wiley–CRUI-CARE agreement.

Conflict of interest

The authors declare no conflict of interest.

Funding information

The support of the University of Bologna (RFO scheme, F. Grepioni) and a PNRR DM 352/2022 project co-financed by CHEMESSENTIA S.r.l (L. Macchietti) are acknowledged.

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