research papers
accessA picture is worth a thousand diffraction spots: using photometry and computer vision to perform rapid high-throughput sample-versatile serial crystallography
aDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom, and bSchool of Chemistry, Cardiff University Main Building, Park Place, CF10 3AT, United Kingdom
*Correspondence e-mail: [email protected]
The `photometric selection' approach as a high throughput, sample tolerant, low cost and highly automatable method of carrying out serial crystallography is presented. Crystalline samples are loaded and distributed onto a simple transparent substrate and an in-line camera identifies crystals using image recognition algorithms from the computer vision project OpenCV. In contrast to established serial techniques, which generally require that crystal samples be refined with narrow size distributions and defined habits, the sample requirements when using photometric selection are shown to be minimal. We demonstrate how broadly effective photometric selection can be by collecting high-quality datasets from three exemplar systems: a small-molecule organometallic, a small-molecule organic and a metal–organic framework system. In contrast to previously established grid-scanning techniques, data collection using photometric selection can be up to six times faster.
Keywords: serial crystallography; photometry; computer vision; high throughput.
1. Introduction
The availability of ultrabright X-ray sources for is increasing (Chapman, 2023
; Raimondi et al., 2023
). This increased brilliance allows X-ray crystallography studies of increasingly small or weakly diffracting crystals to be carried out and, as a result, experiments studying ultrafast processes with high quantities of dose delivery to samples are becoming more accessible. However, with higher X-ray brilliance comes an increased chance of radiation damage during data collection and individual crystals may not survive for long enough in the beam to provide sufficient data for a full structure elucidation (Lewis et al., 2025
).
Serial crystallography is widely used by the macromolecular crystallography community to probe single diffraction images from a large number of crystals. Indexed data from these crystals is then merged to obtain a complete crystal structure, comparable to a single-crystal rotation dataset (Chapman et al., 2011
). Samples can be mounted onto fixed-target grids, rotating cassette tapes, within sheet-on-sheet chips, polymer meshes or even direct liquid injection into the beam (Mehrabi et al., 2020
; Weierstall, 2014
; Illava et al., 2021
; Zhao et al., 2019
; Cheng, 2020
; Doak et al., 2018
; Cianci et al., 2019
; Doak et al., 2024
). This has several advantages compared to single-crystal studies, including reducing radiation damage by spreading the radiation dose across crystals, with one example claiming the collection of an effectively `zero dose' structure from a radiation-sensitive sample (Pearson & Mehrabi, 2020
; Schulz et al., 2022
; Hough & Owen, 2021
; Ebrahim et al., 2019
; Lewis et al., 2025
).
Several works have recently emerged applying serial techniques to small-molecule crystal systems (Schriber et al., 2022
; Takaba et al., 2023
; Kang et al., 2024
). One key challenge to overcome is the relatively sparse diffraction patterns, making indexing small-molecule systems more difficult compared to macromolecules (Moon et al., 2024
). Introducing a small rotation at each crystal location, through methods such as small rotative fixed-target serial synchrotron crystallography (SR-FT-SSX), tackles this by collecting small wedges of diffraction space for each crystal. This increases the amount of data available, therefore making indexing individual crystal datasets much easier. SR-FT-SSX has been demonstrated as a viable approach to carrying out serial crystallography on small-molecule and framework systems at synchrotrons (Lewis et al., 2024
; De Zitter et al., 2024
).
Generally, serial synchrotron crystallography experiments tend to use grid substrates for sample mounting, which are typically covered with many tapered holes or `wells'. These wells are positioned in a precisely ordered array, allowing motors to raster across the surface to probe the contents of each well. Grid substrates have been successfully employed in a large number of serial crystallography studies (Ebrahim et al., 2019
; Mehrabi et al., 2020
; Pearson & Mehrabi, 2020
; Schulz et al., 2022
; Carrillo et al., 2023
; Roedig et al., 2016
; Roedig et al., 2017
; Owen et al., 2023
; Ren et al., 2018
; Lee et al., 2020
; Horrell et al., 2021
; Sherrell et al., 2022
). In this work, we demonstrate the serial crystallography of samples mounted onto planar `flat-film' sample holders, with the crystals identified using computer vision and photometric selection for the first time.
Sample loading onto a planar film provides a more facile alternative to grid loading with several advantages. Firstly, it allows SR-FT-SSX to be applied to samples without going through lengthy and sample-costly recrystallization studies. In fact, in this work, we demonstrate that it is possible to use relatively heterogenous samples, including those `as obtained' from chemical suppliers. Secondly, mounting the crystals directly onto a flat film also means that the samples on the substrate are more representative of the bulk, with none of the size or shape filtering that occurs during loading or recrystallization. Thirdly, in comparison to textured grid substrates, flat-film sample holders are cheaper and quicker to produce and load at scale, whilst being compatible with robotic manipulators and liquid-nitrogen-flow cooling devices with no further modification.
As a result of these three advantages, we tentatively suggest that our methodology will enable the study of small-molecule systems that previously were considered unsuitable for serial experiments. It is our hope that by demonstrating the range of samples SR-FT-SSX can successfully study in this work, we will encourage a wider uptake of the technique in the small-molecule community.
2. Methods
2.1. Sample mounting
All data were collected at I19 at the UK Synchrotron Diamond Light Source on a four-circle Newport Diffractometer in EH2, equipped with an Eiger 4M CdTe photon-counting pixel array detector and with an X-ray wavelength of 0.4859 Å (Ag K-edge). The sample was mounted normal to the X-ray beam on top of three linear piezo stages from SmarAct SLC2430, allowing for translating orthogonal to the X-ray beam path and translation along the X-ray beam path (Fig. 1
). Temperature control was carried out using an Oxford Cryostream 700 series.
| Figure 1 Photograph of the experimental setup at I19 at the UK Synchrotron Diamond Light Source, showing the sample in the X-ray path, the camera setup to take in-line photographs of the sample and the position of the polarizers for capturing birefringence. |
Custom flat-film sample holders were laser cut from a 50 µm-thick poly(methyl methacrylate) (PMMA) film using a custom in-house laser shaping system and were glued to standard single-crystal pin magnetic bases. The sample area is 2.88 mm × 2.88 mm with 50 µm diameter fiducial holes at each corner (Fig. S2 in the supporting information). These flat-film sample holders are low cost and are compatible with both standard liquid-nitrogen-flow cooling devices and sample robot systems, which will allow for the planned future automation of the process. Crystalline samples are dispersed in manipulation oil (Fomblin Y) and spread evenly across the PMMA sample holders using a Mylar `rake' tool (Fig. S3) to allow good dispersal of the crystals without damaging the sample. The flat film is mounted on the diffractometer (Fig. 1
) and motorized stages are used to align the sample film using three fiducial points, i.e. in the top-left, top-right and bottom-left corners. By using three orthogonal motor stages, the fiducials are each brought to the centre of rotation about phi, which is in turn aligned with the X-ray beam. The motor positions that place each fiducial into the centre of rotation are then used to generate a set of motor positions across the sample that are also aligned with the centre of rotation. This allows large rotations about phi to be carried out at any point on the sample without significantly moving the crystal relative to the X-ray beam. All data were collected with a 100 µm beam; however, it should be noted that the beamline at I19 is equipped with multiple pinhole sizes (with diameters of 20, 40 and 100 µm; see examples in Fig. S4), allowing the beam size and flux level to be tuned to the sample where necessary.
2.2. Sample preparation
[1,2-Bis(diphenylphosphino)ethane]dichloronickel (1) was synthesized according to the literature (Warren et al., 2014
). 4′-Chloro-2,2′:6′,2′′-terpyridine (2) was purchased from Sigma–Aldrich and used as received. Triaquabis(benzene-1,3,5-tricarboxylato)tricopper(II) (3) was prepared by Conor Rowley using a published method while working with Professor Cameron Kepert at the University of Sydney (Wu et al., 2010
).
2.3. In situ crystal finding
The principal challenge presented when a sample is mounted onto a planar film lies in locating the positions of individual crystals. In contrast to grid-based mounts or liquid-injection systems, where the jet or the well parameters predefine a finite number of positions where crystals may be found, the dispersion of crystals across a flat film is more random. We present a method, hereafter known as the `Photometric Selection' (PS) method, which involves taking an optical still image of the sample and applying image-processing and computer vision techniques to detect the positions of the crystals (Fig. 2
). In contrast to previously published fixed-target techniques, this technique requires neither an initial X-ray exposure nor a lengthy scan, thus speeding up the overall collection process and minimizing the total X-ray dose experienced per crystal. To assist in identifying crystals, our in-line microscope camera system has been adapted to include two linear polarizers, allowing us to view any birefringence the sample exhibits in situ (Fig. 1
and Fig. S1 of the supporting information).
| Figure 2 An overview of how the steps were taken, showing how the photometric selection (PS) method compared to the diffractive sweep (DS) method in finding crystals on a flat planar substrate. |
Evaluating crystals photometrically is not always intuitive and so we compare PS to a more conventional `grid-scanning' serial technique to ensure that the advantages of locating crystals with PS do not come with a significant loss in data quality (Wojdyla et al., 2016
; De Zitter et al., 2024
). We do this using a technique we refer to as the `Diffractive Sweep' technique (DS), vide infra.
2.4. Photometric data collection
To identify crystals using photometric selection (PS), after fiducial alignment, an on-axis camera (a Mako G-234 C in a bespoke lens assembly) was used to record a series of optical still images of the substrate which was mounted on the goniometer head. The substrate was then rastered in front of the camera and a 6×8 grid of photographs taken until the entire substrate had been imaged (Fig. 3
). By storing the motor movements between the fiducials and relating them to known scaling factors, a composite image was generated by collecting the still images together. Alongside this composite image, a human-readable file was generated relating every pixel in the composite image to a set of real-space goniometer motor positions.
| | Figure 3 The locations of crystals on a planar substrate are found by taking optical images of the entire substrate and then using computer vision algorithms to identify the crystals in the image. |
2.5. Image processing with OpenCV
Composite images are analysed using a bespoke piece of software written in Python. A graphical user interface was developed in-house using the PyQt library and is intended for non-expert beamline users. The image-processing software also utilized OpenCV, an open-source computer vision package (Bradski, 2000
; The OpenCV Library, https://opencv.org/). The general steps for using the software are outlined in Fig. 4
. The open-source software used, along with example images, are available according to the data availability statement. Full details of the parameters used for the samples shown in this work can be found in Figs. S6, S12 and S18, and corresponding Tables S1, S5 and S9 of the supporting information.
| Figure 4 Image-processing pipeline for photometric crystal identification on a flat film. (1) From the original image, with a 500 µm scale bar and key to indicate a 100 µm beamsize relative to the sample; (2) this was processed in a multistep procedure comprised of adjusting the contrast of the image; (3) thresholding the image to generate a binary image setting all the pixel values above a certain value at 1 and all other values as 0; (4) using OpenCV's `findContours' algorithm to locate the centre of crystals; (5) superimposing the positions of the crystals located in the previous step onto the raw image; and (6) finding the shortest pathway across the sample which visits each crystal location once. For expanded (6), see Fig. S7 in the supporting information. |
Note that the example substrate is held between two crossed linear polarizers and, for some of the samples in this work, certain crystals appear as bright regions due to their birefringence. Starting from the raw composite image (Fig. 4
, Section 1), the contrast and brightness are initially adjusted to make those bright regions stand out as much as possible from the background (Fig. 4
, Section 2). This adjusted image is then converted into a binary image, with pixels above a variable threshold being converted into a `white' pixel and those below that threshold converted to a `black' pixel (Fig. 4
, Section 3). In this step, a small amount of Gaussian blurring is carried out to smooth the edges of the binarized regions.
This binary image is then fed into the `findContours' function in the OpenCV library, which locates isolated regions of the same colour within the binary image (The OpenCV Library, https://opencv.org/; Bradski, 2000
). These contours are overlaid onto the raw image (Fig. 4
, Section 4) to allow the user to see which regions are identified as bright (i.e. assumed to be crystalline). At this stage, we apply size-based filtering to remove any artefacts, multiple crystals, anomalous photographic artefacts or significantly oversized crystals. Following this size filtering, the centres of the contours are recorded as pixel values and overlaid onto the raw image as a small red point (Fig. 4
, Section 5).
Finally, a function designed to solve the Travelling Salesman problem (from Python TSP Solver) is applied to the pixel coordinates to reduce the path length around the substrate compared to a `rasterized' route (Fig. 4
, Section 6) (Goulart, 2024
). In the case shown in this example, the final route is around 11% of the distance of a raster route, so overheads are reduced significantly by this final step. It should be noted here that a heuristic function is applied rather than one intended to find a true solution. This significantly reduces the computational cost; however, this also means that a different `optimal' path is produced each time the data are processed (Goulart, 2024
).
The final output is a list of image pixel positions, ordered to minimize travel time between them. As stated previously, each pixel position is linked to specific motor positions, and so it is trivial to convert these pixel positions into motor positions to move the crystals into the beam for experimental collection.
2.6. Diffractive sweep crystal identification
To identify crystals using the diffractive sweep method, after fiducial alignment, the sample is divided into a grid of n × n virtual cells (Fig. 5
). For the samples investigated in this work, n = 36 (i.e. a total of 1296 cells); however, this value can be tuned according to experimental demands, with a smaller beam size requiring a higher number of cells to maintain full sample coverage. For example, using the 40 µm pinhole increases the number of cells to 9216. The sample is then rastered across the X-ray beam such that each cell is subject to a single 0.5 s X-ray image collection taken across a 1° phi rotation. The software package Diffraction Integration for Advanced Light Sources (DIALS) is then used to count the number of diffraction spots observed per cell (Winter et al., 2018
). The coarse images from these `spot-finding' experiments are used to determine the presence of any diffracting material on the substrate and no further peak processing is carried out at this stage.
| | Figure 5 Identifying crystal positions on a flat substrate using the diffractive sweep method involves dividing the substrate into n × n (n = 36) virtual cells, then carrying out an initial `spot-finding' coarse data collection with a single image per cell. The number of diffraction spots per cell are counted and used to identify the cells containing crystals. |
Cells corresponding to images containing a total number of spots between selected thresholds (in general, any number above 10 and lower than 100) are then selected for further data collection. This data can also be used to generate spatially resolved `diffraction maps', where an image of the sample is built up by converting the number of spots observed for each well into a `pixel These diffraction maps show good agreement with microscope images of the samples (Fig. 6
and Figs. S8, S14 and S20 of the supporting information).
| | Figure 6 Microscope images of the substrate loaded with 1 (left), compared to the `diffraction map' (right) reconstructed from a `spot-finding' collection, where single diffraction images are taken at each pixel. Pixel (in yellow) corresponds to the number of diffraction spots at that cell, whereas black areas indicate no diffraction spots were recorded. The area on the photograph corresponding to the collection area is denoted by the white box. |
2.7. Processing diffraction data
Each individual crystal located according to either DS or PS is subjected to a 5° partial rotation dataset collection, with 25 images taken at 0.2° per image and 0.2 s of exposure per image. Each dataset is processed separately using an auto-processing pipeline for SR-FT-SSX data, outlined in a previous publication (Lewis et al., 2024
). The pipeline utilizes DIALS implemented through Xia2 and is semi-automated with in-house scripts (Winter et al., 2018
). Spot-finding and indexing is carried out to determine the unit-cell parameters and space group.
Following our previous work, this processing occurs according to a simple feedback loop (Lewis et al., 2024
). First, an initial sweep of the data allowing DIALS to determine the by itself is usually sufficient to learn the unit-cell parameters of an unknown sample. The processing is then repeated, feeding the known unit-cell parameters and into Xia2. In this way, a higher number of rotation datasets are successfully solved in the second pass. Occasionally, multiple lattices are observed within the same collection, which is a symptom of the relatively large beam size compared to the sample (Fig. 6
). In this case, the largest component is extracted from these collections and the remaining data are discarded. Previous works have demonstrated that a multi-lattice indexer can extract more data; however, high-quality data were obtained without the need for this technique (Beilsten-Edmands et al., 2024
).
A selection of refinement metrics from each solved dataset (including indexed unit-cell parameters, space group, diffraction signal-to-noise and residual R factors) is extracted from the individual datasets and used as `structure quality factors' to assess the quality of each partial dataset. The datasets can then be filtered according to chosen metrics to ensure the highest quality data are taken forward for merging and scaling into the final dataset. In this work, I/σ(I) and Rpim were used as the primary quality criteria (see Section S1 in the supporting information). Individual rotation datasets meeting the quality criteria were then merged using DIALS before a final cell and structure solution and using SHELXT and SHELXL, respectively (Winter et al., 2018
; Sheldrick, 2015a
; Sheldrick, 2015b
). Note that for serial crystallography datasets, it is often preferable to use Rpim rather than Rint. Variations in crystal size and partiality affect individual measurements within a serial crystallography dataset, but averaging many observations improves the overall precision. Therefore, in serial crystallography it is desirable to collect large amounts of data and the datasets often exhibit high multiplicity. However, Rint increases with multiplicity even when data quality is good, making Rint a misleading data quality metric in this context. Rpim is a metric related to Rint, which also includes a multiplicity correction and therefore provides a fairer and more meaningful measure of data quality when referring to serial crystallography datasets (Weiss, 2001
). It is critical to bear in mind that Rpim and Rint are not the same metric and cannot be directly compared – for example, an Rpim of 0.032 does not indicate the same data quality as would an Rint of 0.032. For the datasets presented in this work, the Rpim observed is within acceptable parameters, indicating good overall data quality despite the high Rint.
3. Results
3.1. [1,2-Bis(diphenylphosphino)ethane]dichloronickel (1)
Sample 1 was selected as an organometallic system for analysis with this technique. It contains a first-row transition metal and is established in the literature for its catalytic properties (Clevenger et al., 2020
). Additionally, 1 crystallizes in the P21/c [which accounts for 33.8% of structures in the Cambridge Structural Database (CSD; Groom et al., 2016
) as of April 2025
] and the relatively low symmetry of the system can provide insights as to how best to collect serial datasets to result in a high-completeness structure. For these two reasons, 1 can be considered a representative exemplar of organometallic samples.
Initially, the 5° rotation datasets were collected around a centre phi position of 0° (i.e. with the normal of the substrate parallel to the incident X-rays); however, the resulting merged datasets were of low completeness. This results from crystals of 1 having a on the planar substrate, which only enabled the collection of reflections with lower h indices close to phi = 0° (Fig. 7
and Fig. S5 of the supporting information). In previous and other published works, substrates contain wells, small cavities in which crystals are likely to adopt a wider and more random variety of orientations, and so a higher completeness is obtained.
| Figure 7 A representation of how collections at different phi angles can increase the data coverage obtained from crystals loaded onto a planar film in serial crystallography experiments. |
Rather than complicate our simple flat substrate design, we chose to simulate the random orientation of crystals within wells by varying the initial phi position of the entire substrate. As the angle between the incident beam and the normal to the substrate is increased, we see that higher h indices are accessible across the 5° scan (Fig. 7
). It was found that a good coverage of h indices was obtained by combining the data from 5° rotation datasets collected around phi angles of 0, 30 and 60°, with each dataset coming from a different crystal (Fig. 7
). The merged dataset is of good quality and high completeness (Fig. 8
and Table 1
). Therefore, with no additional equipment, processing costs or time investment, we built up a high-completeness dataset in the presence of strong preferred orientation effects. This multi-phi position approach is widely applicable to other fixed-target collections where completeness is low.
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| Figure 8 The crystal structure of 1, with the crystal located by the PS method. Displacement ellipsoids are drawn at the 50% probability level and H atoms have been omitted for clarity. Additional data are outlined in Table 1 |
The same substrate and sample were then used to perform a comparable DS SR-FT-SSX data collection. Table 1
allows direct comparison of the data obtainable by DS and PS. Both datasets are of high quality with good I/σ(I) and residual factors, although the data from the DS method tends to be slightly better in comparison to the PS method. Note that for serial crystallography datasets, it is preferable to compare Rpim rather than the usual Rint often used as a metric for single-crystal data (see supporting information Section S1). Of note is that the fraction of datasets collected that were used in the final merged structure [i.e. those with a suitable I/σ(I) and Rpim] is higher for DS (42%) compared to PS (28%). This is likely a result of DS finding crystals by directly selecting according to diffraction behaviour. However, even accounting for the slightly higher amount of data required, the fact that no preliminary scan is required still means that the overall time taken to collect data using the PS method is shorter than data collection with a comparable DS method. The data quality of both multi-crystal structures are comparable to a previously published single-crystal structure (Busby et al., 1993
).
3.2. 4′-Chloro-2,2′:6,2′′-terpyridine (2)
Following the successful data obtained for organometallic compound 1, an exemplar organic compound was chosen as the next candidate for study. 2 was selected as it is a commercially available organic compound which is of interest as a ligand for developing catalysts and other novel inorganic compounds (Karges et al., 2019
). Conveniently, 2 can be obtained commercially in a crystalline form and was used as received, with no additional recrystallization stages required prior to data collection.
The data obtained from crystals of 2 were of slightly lower quality than those collected from 1; however, the data quality was generally still good, with high completeness and low residual factors comparable to that of a previously published single-crystal structure (Beves et al., 2006
). Interestingly, the fraction of the collected datasets that was used to provide the final merged structure using the DS technique for 2 is the same as that used for 1 at ca 40%. However, compared to 1, the overall number of datasets collected (and those that passed the filtering criteria) is lower. Even when considering that 2 crystallizes in the orthorhombic Pna21, the completeness for 2 is slightly lower than for 1 due to the lower number of suitable datasets. However, the data for 2 still fall within acceptable parameters, even after the I/σ(I) filter limit is tuned down from 3 to 2 for the PS dataset (Table 2
).
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3.3. Triaquabis(benzene-1,3,5-tricarboxylato)tricopper(II) (3)
Framework materials, especially metal–organic frameworks (MOFs), have exploded in popularity in recent years, with the 2025
Nobel Prize in Chemistry recently awarded for their discovery and development. Our exemplar MOF, sample 3, is a network of benzenetricarboxylic acid ligands and copper metal paddlewheels, also known as HKUST-1, one of the first reported MOFs (Chui et al., 1999
). Crystallography experiments on MOFs are complicated by their porous structure and can require that crystals are mounted in mother liquor or specific solvents to prevent pore collapse. In principle, photometric selection techniques can be applied to such systems with minimal complications, as the substrate has been designed to be compatible with liquid-nitrogen-flow devices for facile temperature control across the entire sample.
3 crystallizes in the cubic Fmm. Due to the high symmetry of 3, fewer datasets at fewer starting phi angles are required compared to 1 or 2. This highlights the importance of the on-the-fly processing of the data to ensure that the correct amount of data is collected for the system under study.
One complication when applying PS techniques to 3 is that cubic systems do not exhibit birefringence, so it may appear that the image-processing pipelines discussed earlier in this work are not able to be used. However, 3 is strongly coloured, and so the crystals can be highlighted in the image by simply inverting the pixel intensities (Table S9 and Fig. S20). Although this will not be a suitable approach for all systems, in the case of 3 an excellent PS dataset was collected. This `inverted mode' of image processing is built into the software used for processing the data and can be applied to any system readily.
Both the PS and DS datasets for 3 (Table 3
) are of good quality with low residuals and good completeness, with data comparable to those of previously published single-crystal structures (Chui et al., 1999
). These structures have been obtained using a solvent mask (BYPASS) to mask away ca 27 electrons from the pores – this roughly corresponds to an ethanol molecule, which is highly disordered within the pore structure (van der Sluis & Spek, 1990
).
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4. Sample independent observations
Having shown that both the PS and the DS methods provide high-quality data, it is worthwhile comparing the techniques more generally across the samples, starting with the time taken for full data collection. A full breakdown of the time required to collect the data for both PS and DS can be found in Tables S14–S16 and Fig. S25; however, in general, data collection is faster in a PS experiment compared to a DS experiment due to the time investment required for the initial grid scan in DS. The difference in the time taken for a PS compared to a DS data collection is most noticeable in samples that do not require many small degree wedges to build up completeness, i.e. in 3, with space group Fmm, where a PS collection is over six times faster than the corresponding DS. Even for the relatively low-symmetry samples 1 and 2, the time savings are significant. Another consideration is that the time taken for a DS data collection depends heavily on the beam size, as the duration of the initial grid scan increases rapidly as you cover the entire substrate, as rather than probing 1296 virtual wells (36 × 36 at 100 µm beamsize), there are instead 9216 virtual wells (96 × 96 at 40 µm beamsize) (Fig. S4 and Tables S17 and S18). In contrast, the time taken to carry out a PS collection has no dependence on the beam size. We anticipate that the time savings of PS compared to DS will continue to improve as we learn more about the scope and limitations of the technique.
One aspect of this work that has not yet been discussed in any significant depth at this point is the size and size distribution of the crystals used. Crystal sizes are calculated from the microphotographs of the substrates (Table 4
and Fig. S24 and Table S13 of the supporting information), and the data demonstrates that these are crystals on the scale of tens of microns with a wide size distribution. The photometry data indicate that a large number of sub-micron crystals are present, although at this scale no details about the crystal can be made out in the microphotographs. Though small, the average sizes of these samples are larger than our smallest recorded sample to be collected on I19, which was ca 1 µm (Aleksich et al., 2025
). Mounting crystals of this size is often the primary challenge in data collection, but using these PMMA mounts, the process is relatively simple and rapid.
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In addition to facilitating the mounting of very small crystals, we have also demonstrated that another advantage of PS over DS is that certain crystal sizes can be targeted by applying size filtering in our software. There are several reasons this selectivity is desirable. Ideally, the crystal size should be matched to the beam size. Larger crystals are often more prone to being polycrystalline and suffer from more significant X-ray absorption effects, both of which can reduce the overall quality of the data. It is for these reasons that a conscious effort was made in this work to avoid the largest crystals using the PS method. In contrast to PS, when locating crystals using the DS method, no size filtering can be applied as no size information is gathered. Instead, DS selects crystals based on the number of reflections observed, which is reflected in the higher modal I/σ(I) and Rpim for the aggregate datasets of crystals selected by DS compared to PS (Tables S3, S4, S7, S8, S11 and S12). In future applications of this technique, there may also be experiment-specific reasons to target crystals based on size, e.g. to target a specific phase or habit of crystals in a mixed-phase sample.
5. Conclusion
We have demonstrated that photometric selection of crystals can be carried out in situ across a range of small-molecule and framework crystalline samples. Although the planar substrates induce a clear preferred sample orientation, this is overcome by tuning the initial exposure angle to obtain structures with high completeness. Although the data quality is comparable assessing photometric selection to gridscan techniques, there are significant advantages to carrying out PS. Primarily, PS was shown to be up to six times faster than DS methods. Additionally, the PS technique exposes crystals to significantly reduced X-ray overall, which is critical when handling radiation-sensitive samples or high Therefore, for time-sensitive or radiation-sensitive samples, the practical advantages of PS identification make it a very attractive technique to integrate into workflows. Finally, the sample versatility offered by PS techniques means than many hundreds of crystals can be loaded in seconds and a full bulk analysis of samples can be carried out. We believe that PS has the potential to make serial crystallography more accessible to a wide variety of new audiences and, by developing various automation processes on our beamline, we are opening up the technique to general users with suitable samples.
This work represents a step along the path toward automated tools for SR-SSX, however, there is still room for improvement. Our next steps include the development of more advanced crystal vision techniques and the incorporation of AI and ML to support on-the-fly decision making during data collection.
Our long-term aim is to enable crystals of interest to be identified, and diffraction data to be collected and analysed, during the experiment in a fully integrated high-throughput workflow.
| Figure 9 The crystal structure of 2, with the crystal located by the PS method. Displacement ellipsoids are drawn at the 50% probability level and H atoms have been omitted for clarity. Full data are given in Table 2 |
| Figure 10 The crystal structure of 3 obtained by the PS method (left). The expanded polymeric structure is shown on the right. Displacement ellipsoids are drawn at the 50% probability level and H atoms have been omitted for clarity. Full crystal data are given in Table 3 |
Supporting information
contains datablocks global, ni_tsp_3isigma0p2rpim, ni_gridscan_3isigma0p2rpim, cubtc_tsp_isigma3_rpim0p2, cubtc_gridscan_isigma3_rpim0p2, clterp_tsp_isigma2_rpim0p2, clterp_gridscan_isigma3_rpim0p2. DOI: https://doi.org/10.1107/S2052252526003568/oz5012sup1.cif
Structure factors: contains datablock ni_tsp_3isigma0p2rpim. DOI: https://doi.org/10.1107/S2052252526003568/oz5012ni_tsp_3isigma0p2rpimsup2.hkl
Structure factors: contains datablock ni_gridscan_3isigma0p2rpim. DOI: https://doi.org/10.1107/S2052252526003568/oz5012ni_gridscan_3isigma0p2rpimsup3.hkl
Structure factors: contains datablock cubtc_tsp_isigma3_rpim0p2. DOI: https://doi.org/10.1107/S2052252526003568/oz5012cubtc_tsp_isigma3_rpim0p2sup4.hkl
Structure factors: contains datablock cubtc_gridscan_isigma3_rpim0p2. DOI: https://doi.org/10.1107/S2052252526003568/oz5012cubtc_gridscan_isigma3_rpim0p2sup5.hkl
Structure factors: contains datablock clterp_tsp_isigma2_rpim0p2. DOI: https://doi.org/10.1107/S2052252526003568/oz5012clterp_tsp_isigma2_rpim0p2sup6.hkl
Structure factors: contains datablock clterp_gridscan_isigma3_rpim0p2. DOI: https://doi.org/10.1107/S2052252526003568/oz5012clterp_gridscan_isigma3_rpim0p2sup7.hkl
Supporting information. DOI: https://doi.org/10.1107/S2052252526003568/oz5012sup8.pdf
| [NiCl2(C26H24P2)] | F(000) = 1088 |
| Mr = 528.00 | Dx = 1.482 Mg m−3 |
| Monoclinic, P21/c | Synchrotron radiation, λ = 0.4859 Å |
| a = 11.3742 (3) Å | Cell parameters from 27921 reflections |
| b = 13.2950 (2) Å | θ = 1.4–17.7° |
| c = 15.8494 (2) Å | µ = 0.41 mm−1 |
| β = 99.003 (2)° | T = 150 K |
| V = 2367.22 (8) Å3 | Plates, yellow |
| Z = 4 | 0.1 × 0.05 × 0.01 mm |
| Newport IS4CCD diffractometer | 4790 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 3888 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.115 |
| small angle phi rotation fixed target serial scans | θmax = 17.7°, θmin = 1.4° |
| Absorption correction: empirical (using intensity measurements) DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −14→14 |
| Tmin = 0.999, Tmax = 1 | k = −16→16 |
| 71211 measured reflections | l = −19→19 |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
| wR(F2) = 0.075 | w = 1/[σ2(Fo2) + (0.0373P)2 + 0.151P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max = 0.001 |
| 4790 reflections | Δρmax = 0.32 e Å−3 |
| 280 parameters | Δρmin = −0.33 e Å−3 |
| 0 restraints |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified from photographs of the sample taken in-situ and by image recognition algorithms. Small rotations were carried out on 537 identified crystals. Out of 537 crystals, 151 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 0.37357 (2) | 0.72036 (2) | 0.29393 (2) | 0.01883 (8) | |
| P2 | 0.52676 (5) | 0.71159 (3) | 0.39221 (3) | 0.01843 (11) | |
| Cl2 | 0.49111 (5) | 0.76660 (3) | 0.20301 (3) | 0.02927 (13) | |
| P1 | 0.26770 (5) | 0.68304 (3) | 0.39083 (2) | 0.01921 (12) | |
| Cl1 | 0.21419 (5) | 0.70249 (3) | 0.19617 (3) | 0.02861 (13) | |
| C15 | 0.5842 (2) | 0.83087 (12) | 0.43647 (10) | 0.0215 (4) | |
| C21 | 0.6508 (2) | 0.64217 (12) | 0.36243 (10) | 0.0209 (4) | |
| C1 | 0.1441 (2) | 0.76483 (12) | 0.40560 (10) | 0.0217 (4) | |
| C22 | 0.6355 (2) | 0.54039 (13) | 0.34059 (11) | 0.0274 (5) | |
| H22 | 0.562451 | 0.509526 | 0.342053 | 0.033* | |
| C14 | 0.4822 (2) | 0.64140 (13) | 0.48157 (10) | 0.0229 (4) | |
| H14A | 0.475839 | 0.570250 | 0.468067 | 0.028* | |
| H14B | 0.540754 | 0.650082 | 0.532537 | 0.028* | |
| C6 | 0.1057 (2) | 0.76802 (13) | 0.48515 (11) | 0.0256 (4) | |
| H6 | 0.140488 | 0.725975 | 0.528927 | 0.031* | |
| C2 | 0.0927 (2) | 0.83079 (13) | 0.34137 (11) | 0.0275 (4) | |
| H2 | 0.118110 | 0.830464 | 0.288396 | 0.033* | |
| C7 | 0.2173 (2) | 0.55253 (12) | 0.38035 (10) | 0.0219 (4) | |
| C13 | 0.3628 (2) | 0.68232 (13) | 0.49605 (10) | 0.0226 (4) | |
| H13A | 0.371534 | 0.749869 | 0.519310 | 0.027* | |
| H13B | 0.328551 | 0.639871 | 0.535632 | 0.027* | |
| C12 | 0.2605 (2) | 0.48988 (14) | 0.32187 (11) | 0.0286 (5) | |
| H12 | 0.309394 | 0.516108 | 0.285447 | 0.034* | |
| C26 | 0.7596 (2) | 0.68747 (14) | 0.35844 (11) | 0.0274 (5) | |
| H26 | 0.770567 | 0.755101 | 0.372513 | 0.033* | |
| C20 | 0.5738 (2) | 0.91702 (13) | 0.38578 (12) | 0.0325 (5) | |
| H20 | 0.535363 | 0.913811 | 0.329577 | 0.039* | |
| C16 | 0.6396 (2) | 0.83742 (13) | 0.52090 (11) | 0.0319 (5) | |
| H16 | 0.645865 | 0.780506 | 0.555431 | 0.038* | |
| C11 | 0.2310 (2) | 0.38842 (14) | 0.31753 (12) | 0.0332 (5) | |
| H11 | 0.260807 | 0.346682 | 0.278801 | 0.040* | |
| C5 | 0.0158 (2) | 0.83362 (14) | 0.49906 (12) | 0.0311 (5) | |
| H5 | −0.009826 | 0.834696 | 0.551959 | 0.037* | |
| C10 | 0.1573 (2) | 0.34980 (14) | 0.37092 (13) | 0.0336 (5) | |
| H10 | 0.135810 | 0.282269 | 0.366980 | 0.040* | |
| C4 | −0.0360 (2) | 0.89755 (14) | 0.43479 (13) | 0.0319 (5) | |
| H4 | −0.096974 | 0.940722 | 0.444121 | 0.038* | |
| C3 | 0.0037 (2) | 0.89668 (14) | 0.35673 (13) | 0.0338 (5) | |
| H3 | −0.029622 | 0.940727 | 0.313983 | 0.041* | |
| C8 | 0.1453 (2) | 0.51188 (14) | 0.43508 (12) | 0.0318 (5) | |
| H8 | 0.117233 | 0.552716 | 0.475191 | 0.038* | |
| C23 | 0.7282 (2) | 0.48568 (14) | 0.31692 (12) | 0.0335 (5) | |
| H23 | 0.717761 | 0.417881 | 0.303345 | 0.040* | |
| C24 | 0.8362 (2) | 0.53134 (15) | 0.31334 (13) | 0.0358 (5) | |
| H24 | 0.898501 | 0.494279 | 0.297328 | 0.043* | |
| C18 | 0.6776 (2) | 1.01253 (14) | 0.50323 (14) | 0.0367 (5) | |
| H18 | 0.710141 | 1.072942 | 0.525361 | 0.044* | |
| C25 | 0.8522 (2) | 0.63281 (15) | 0.33367 (13) | 0.0351 (5) | |
| H25 | 0.924740 | 0.663799 | 0.330637 | 0.042* | |
| C9 | 0.1154 (2) | 0.41056 (14) | 0.43002 (13) | 0.0371 (6) | |
| H9 | 0.066970 | 0.383741 | 0.466535 | 0.044* | |
| C17 | 0.6856 (3) | 0.92835 (15) | 0.55396 (13) | 0.0394 (6) | |
| H17 | 0.722056 | 0.932292 | 0.610643 | 0.047* | |
| C19 | 0.6211 (3) | 1.00803 (14) | 0.41918 (14) | 0.0376 (6) | |
| H19 | 0.614804 | 1.065436 | 0.385244 | 0.045* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.02372 (17) | 0.01939 (12) | 0.01285 (11) | −0.00145 (9) | 0.00121 (10) | 0.00192 (7) |
| P2 | 0.0232 (3) | 0.01510 (19) | 0.01637 (19) | −0.00143 (18) | 0.00124 (19) | 0.00153 (14) |
| Cl2 | 0.0319 (3) | 0.0376 (2) | 0.01889 (19) | −0.0017 (2) | 0.0060 (2) | 0.00679 (16) |
| P1 | 0.0229 (3) | 0.0192 (2) | 0.01499 (18) | −0.00323 (19) | 0.00142 (18) | 0.00051 (14) |
| Cl1 | 0.0315 (3) | 0.0336 (2) | 0.01836 (19) | −0.0021 (2) | −0.00340 (19) | −0.00105 (15) |
| C15 | 0.0239 (12) | 0.0163 (7) | 0.0248 (8) | −0.0021 (7) | 0.0056 (8) | −0.0023 (6) |
| C21 | 0.0254 (12) | 0.0170 (7) | 0.0191 (7) | 0.0013 (7) | −0.0002 (8) | 0.0002 (6) |
| C1 | 0.0242 (12) | 0.0191 (8) | 0.0213 (8) | −0.0048 (8) | 0.0017 (8) | −0.0027 (6) |
| C22 | 0.0296 (14) | 0.0209 (8) | 0.0316 (9) | −0.0039 (8) | 0.0046 (9) | −0.0032 (7) |
| C14 | 0.0284 (13) | 0.0213 (8) | 0.0183 (7) | −0.0031 (8) | 0.0009 (8) | 0.0041 (6) |
| C6 | 0.0302 (14) | 0.0239 (8) | 0.0228 (8) | −0.0036 (8) | 0.0042 (8) | −0.0023 (6) |
| C2 | 0.0300 (14) | 0.0276 (9) | 0.0248 (8) | −0.0005 (9) | 0.0042 (8) | 0.0026 (7) |
| C7 | 0.0254 (13) | 0.0193 (7) | 0.0199 (7) | −0.0020 (8) | 0.0003 (8) | 0.0012 (6) |
| C13 | 0.0283 (13) | 0.0230 (8) | 0.0158 (7) | −0.0035 (8) | 0.0013 (7) | 0.0013 (6) |
| C12 | 0.0329 (15) | 0.0280 (9) | 0.0248 (8) | −0.0034 (9) | 0.0046 (9) | −0.0020 (7) |
| C26 | 0.0304 (14) | 0.0232 (8) | 0.0280 (9) | −0.0032 (9) | 0.0027 (9) | −0.0049 (7) |
| C20 | 0.0479 (17) | 0.0206 (8) | 0.0291 (9) | −0.0032 (9) | 0.0062 (10) | 0.0019 (7) |
| C16 | 0.0413 (16) | 0.0232 (9) | 0.0286 (9) | −0.0014 (9) | −0.0031 (9) | −0.0013 (7) |
| C11 | 0.0411 (17) | 0.0258 (9) | 0.0323 (9) | −0.0006 (9) | 0.0043 (10) | −0.0082 (7) |
| C5 | 0.0365 (15) | 0.0298 (9) | 0.0287 (9) | −0.0059 (9) | 0.0105 (9) | −0.0081 (7) |
| C10 | 0.0361 (16) | 0.0187 (8) | 0.0440 (10) | −0.0022 (9) | −0.0003 (10) | 0.0019 (7) |
| C4 | 0.0249 (14) | 0.0274 (9) | 0.0432 (10) | −0.0007 (9) | 0.0049 (10) | −0.0085 (8) |
| C3 | 0.0340 (16) | 0.0298 (9) | 0.0362 (9) | 0.0029 (10) | 0.0011 (10) | 0.0018 (8) |
| C8 | 0.0370 (16) | 0.0238 (9) | 0.0373 (10) | −0.0011 (9) | 0.0146 (10) | −0.0002 (7) |
| C23 | 0.0430 (17) | 0.0219 (8) | 0.0362 (9) | 0.0023 (9) | 0.0077 (10) | −0.0084 (7) |
| C24 | 0.0344 (16) | 0.0346 (10) | 0.0385 (10) | 0.0075 (10) | 0.0059 (10) | −0.0099 (8) |
| C18 | 0.0353 (16) | 0.0225 (9) | 0.0528 (12) | −0.0068 (9) | 0.0083 (11) | −0.0138 (8) |
| C25 | 0.0274 (15) | 0.0357 (10) | 0.0423 (11) | −0.0049 (10) | 0.0060 (10) | −0.0076 (8) |
| C9 | 0.0397 (17) | 0.0265 (9) | 0.0476 (11) | −0.0053 (10) | 0.0149 (11) | 0.0069 (8) |
| C17 | 0.0466 (18) | 0.0316 (10) | 0.0366 (10) | −0.0048 (11) | −0.0042 (11) | −0.0107 (8) |
| C19 | 0.0493 (18) | 0.0192 (8) | 0.0464 (11) | −0.0065 (10) | 0.0144 (11) | 0.0010 (8) |
| Ni1—P2 | 2.1510 (6) | C12—C11 | 1.389 (3) |
| Ni1—Cl2 | 2.2011 (5) | C26—H26 | 0.9300 |
| Ni1—P1 | 2.1527 (5) | C26—C25 | 1.386 (3) |
| Ni1—Cl1 | 2.2055 (6) | C20—H20 | 0.9300 |
| P2—C15 | 1.8139 (17) | C20—C19 | 1.394 (3) |
| P2—C21 | 1.810 (2) | C16—H16 | 0.9300 |
| P2—C14 | 1.8325 (16) | C16—C17 | 1.387 (3) |
| P1—C1 | 1.821 (2) | C11—H11 | 0.9300 |
| P1—C7 | 1.8267 (18) | C11—C10 | 1.380 (3) |
| P1—C13 | 1.8404 (19) | C5—H5 | 0.9300 |
| C15—C20 | 1.393 (2) | C5—C4 | 1.386 (3) |
| C15—C16 | 1.390 (3) | C10—H10 | 0.9300 |
| C21—C22 | 1.401 (2) | C10—C9 | 1.377 (3) |
| C21—C26 | 1.386 (3) | C4—H4 | 0.9300 |
| C1—C6 | 1.398 (2) | C4—C3 | 1.382 (3) |
| C1—C2 | 1.401 (3) | C3—H3 | 0.9300 |
| C22—H22 | 0.9300 | C8—H8 | 0.9300 |
| C22—C23 | 1.380 (3) | C8—C9 | 1.389 (3) |
| C14—H14A | 0.9700 | C23—H23 | 0.9300 |
| C14—H14B | 0.9700 | C23—C24 | 1.380 (4) |
| C14—C13 | 1.513 (3) | C24—H24 | 0.9300 |
| C6—H6 | 0.9300 | C24—C25 | 1.392 (3) |
| C6—C5 | 1.387 (3) | C18—H18 | 0.9300 |
| C2—H2 | 0.9300 | C18—C17 | 1.373 (3) |
| C2—C3 | 1.389 (3) | C18—C19 | 1.387 (3) |
| C7—C12 | 1.392 (2) | C25—H25 | 0.9300 |
| C7—C8 | 1.392 (3) | C9—H9 | 0.9300 |
| C13—H13A | 0.9700 | C17—H17 | 0.9300 |
| C13—H13B | 0.9700 | C19—H19 | 0.9300 |
| C12—H12 | 0.9300 | ||
| P2—Ni1—Cl2 | 89.03 (2) | C7—C12—H12 | 119.8 |
| P2—Ni1—P1 | 87.191 (19) | C11—C12—C7 | 120.43 (19) |
| P2—Ni1—Cl1 | 170.586 (19) | C11—C12—H12 | 119.8 |
| Cl2—Ni1—Cl1 | 94.98 (2) | C21—C26—H26 | 119.7 |
| P1—Ni1—Cl2 | 175.12 (2) | C25—C26—C21 | 120.55 (17) |
| P1—Ni1—Cl1 | 89.22 (2) | C25—C26—H26 | 119.7 |
| C15—P2—Ni1 | 115.75 (7) | C15—C20—H20 | 119.9 |
| C15—P2—C14 | 105.82 (8) | C15—C20—C19 | 120.11 (19) |
| C21—P2—Ni1 | 114.53 (6) | C19—C20—H20 | 119.9 |
| C21—P2—C15 | 107.37 (9) | C15—C16—H16 | 119.8 |
| C21—P2—C14 | 105.26 (8) | C17—C16—C15 | 120.38 (17) |
| C14—P2—Ni1 | 107.26 (7) | C17—C16—H16 | 119.8 |
| C1—P1—Ni1 | 118.90 (6) | C12—C11—H11 | 120.1 |
| C1—P1—C7 | 109.95 (10) | C10—C11—C12 | 119.75 (18) |
| C1—P1—C13 | 104.06 (8) | C10—C11—H11 | 120.1 |
| C7—P1—Ni1 | 110.90 (6) | C6—C5—H5 | 119.7 |
| C7—P1—C13 | 102.07 (8) | C4—C5—C6 | 120.53 (17) |
| C13—P1—Ni1 | 109.41 (7) | C4—C5—H5 | 119.7 |
| C20—C15—P2 | 120.19 (14) | C11—C10—H10 | 119.8 |
| C16—C15—P2 | 120.58 (12) | C9—C10—C11 | 120.46 (18) |
| C16—C15—C20 | 119.23 (16) | C9—C10—H10 | 119.8 |
| C22—C21—P2 | 119.00 (16) | C5—C4—H4 | 120.2 |
| C26—C21—P2 | 121.89 (13) | C3—C4—C5 | 119.5 (2) |
| C26—C21—C22 | 119.08 (19) | C3—C4—H4 | 120.2 |
| C6—C1—P1 | 119.38 (15) | C2—C3—H3 | 119.6 |
| C6—C1—C2 | 118.84 (18) | C4—C3—C2 | 120.74 (19) |
| C2—C1—P1 | 121.57 (14) | C4—C3—H3 | 119.6 |
| C21—C22—H22 | 119.8 | C7—C8—H8 | 119.9 |
| C23—C22—C21 | 120.3 (2) | C9—C8—C7 | 120.25 (18) |
| C23—C22—H22 | 119.8 | C9—C8—H8 | 119.9 |
| P2—C14—H14A | 110.3 | C22—C23—H23 | 119.9 |
| P2—C14—H14B | 110.3 | C24—C23—C22 | 120.17 (18) |
| H14A—C14—H14B | 108.5 | C24—C23—H23 | 119.9 |
| C13—C14—P2 | 107.29 (12) | C23—C24—H24 | 120.0 |
| C13—C14—H14A | 110.3 | C23—C24—C25 | 120.1 (2) |
| C13—C14—H14B | 110.3 | C25—C24—H24 | 120.0 |
| C1—C6—H6 | 119.8 | C17—C18—H18 | 119.8 |
| C5—C6—C1 | 120.30 (18) | C17—C18—C19 | 120.40 (18) |
| C5—C6—H6 | 119.8 | C19—C18—H18 | 119.8 |
| C1—C2—H2 | 120.0 | C26—C25—C24 | 119.8 (2) |
| C3—C2—C1 | 120.05 (17) | C26—C25—H25 | 120.1 |
| C3—C2—H2 | 120.0 | C24—C25—H25 | 120.1 |
| C12—C7—P1 | 119.38 (14) | C10—C9—C8 | 120.01 (19) |
| C8—C7—P1 | 121.27 (13) | C10—C9—H9 | 120.0 |
| C8—C7—C12 | 119.07 (16) | C8—C9—H9 | 120.0 |
| P1—C13—H13A | 110.5 | C16—C17—H17 | 119.9 |
| P1—C13—H13B | 110.5 | C18—C17—C16 | 120.16 (19) |
| C14—C13—P1 | 106.19 (11) | C18—C17—H17 | 119.9 |
| C14—C13—H13A | 110.5 | C20—C19—H19 | 120.2 |
| C14—C13—H13B | 110.5 | C18—C19—C20 | 119.68 (18) |
| H13A—C13—H13B | 108.7 | C18—C19—H19 | 120.2 |
| Ni1—P2—C15—C20 | −31.2 (2) | C1—C6—C5—C4 | −0.7 (3) |
| Ni1—P2—C15—C16 | 149.32 (17) | C1—C2—C3—C4 | −0.6 (3) |
| Ni1—P2—C21—C22 | −61.19 (14) | C22—C21—C26—C25 | −0.3 (3) |
| Ni1—P2—C21—C26 | 117.09 (14) | C22—C23—C24—C25 | 0.0 (3) |
| Ni1—P2—C14—C13 | −45.21 (12) | C14—P2—C15—C20 | −149.78 (19) |
| Ni1—P1—C1—C6 | −154.40 (13) | C14—P2—C15—C16 | 30.7 (2) |
| Ni1—P1—C1—C2 | 20.35 (19) | C14—P2—C21—C22 | 56.36 (15) |
| Ni1—P1—C7—C12 | 7.35 (19) | C14—P2—C21—C26 | −125.36 (15) |
| Ni1—P1—C7—C8 | −178.72 (17) | C6—C1—C2—C3 | −1.1 (3) |
| Ni1—P1—C13—C14 | −35.94 (12) | C6—C5—C4—C3 | −0.9 (3) |
| P2—C15—C20—C19 | −178.12 (19) | C2—C1—C6—C5 | 1.7 (3) |
| P2—C15—C16—C17 | 178.6 (2) | C7—P1—C1—C6 | 76.26 (17) |
| P2—C21—C22—C23 | 179.46 (15) | C7—P1—C1—C2 | −108.98 (17) |
| P2—C21—C26—C25 | −178.63 (15) | C7—P1—C13—C14 | 81.59 (13) |
| P2—C14—C13—P1 | 49.84 (13) | C7—C12—C11—C10 | 0.7 (4) |
| P1—C1—C6—C5 | 176.64 (15) | C7—C8—C9—C10 | 0.3 (4) |
| P1—C1—C2—C3 | −175.86 (16) | C13—P1—C1—C6 | −32.42 (17) |
| P1—C7—C12—C11 | 174.82 (18) | C13—P1—C1—C2 | 142.33 (16) |
| P1—C7—C8—C9 | −175.21 (19) | C13—P1—C7—C12 | −109.11 (17) |
| C15—P2—C21—C22 | 168.78 (14) | C13—P1—C7—C8 | 64.8 (2) |
| C15—P2—C21—C26 | −12.94 (16) | C12—C7—C8—C9 | −1.3 (3) |
| C15—P2—C14—C13 | 78.90 (14) | C12—C11—C10—C9 | −1.7 (4) |
| C15—C20—C19—C18 | −0.5 (4) | C26—C21—C22—C23 | 1.1 (3) |
| C15—C16—C17—C18 | −0.5 (4) | C20—C15—C16—C17 | −0.9 (4) |
| C21—P2—C15—C20 | 98.18 (19) | C16—C15—C20—C19 | 1.4 (4) |
| C21—P2—C15—C16 | −81.34 (19) | C11—C10—C9—C8 | 1.2 (4) |
| C21—P2—C14—C13 | −167.59 (12) | C5—C4—C3—C2 | 1.6 (3) |
| C21—C22—C23—C24 | −1.0 (3) | C8—C7—C12—C11 | 0.7 (3) |
| C21—C26—C25—C24 | −0.6 (3) | C23—C24—C25—C26 | 0.7 (3) |
| C1—P1—C7—C12 | 140.89 (17) | C17—C18—C19—C20 | −0.9 (4) |
| C1—P1—C7—C8 | −45.2 (2) | C19—C18—C17—C16 | 1.4 (4) |
| C1—P1—C13—C14 | −164.00 (11) |
| C26H24Cl2NiP2 | F(000) = 1088 |
| Mr = 528.00 | Dx = 1.481 Mg m−3 |
| Monoclinic, P21/c | Synchrotron radiation, λ = 0.4859 Å |
| a = 11.3788 (2) Å | Cell parameters from 21993 reflections |
| b = 13.29528 (17) Å | θ = 1.4–17.7° |
| c = 15.8488 (2) Å | µ = 0.41 mm−1 |
| β = 99.0149 (14)° | T = 150 K |
| V = 2368.06 (7) Å3 | Plates, yellow |
| Z = 4 | 0.1 × 0.05 × 0.01 mm |
| Newport IS4CCD diffractometer | 5500 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 4388 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.092 |
| small angle phi rotation fixed target serial scans | θmax = 18.9°, θmin = 1.4° |
| Absorption correction: empirical (using intensity measurements) 'DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −15→15 |
| Tmin = 0.999, Tmax = 1 | k = −17→17 |
| 60273 measured reflections | l = −20→20 |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
| wR(F2) = 0.073 | w = 1/[σ2(Fo2) + (0.0338P)2 + 0.3616P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max = 0.001 |
| 5500 reflections | Δρmax = 0.38 e Å−3 |
| 280 parameters | Δρmin = −0.31 e Å−3 |
| 0 restraints |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified by collecting single diffraction images at 1296 locations on the substrate. Small rotations were carried out on 272 identified crystals. Out of 272 crystals, 119 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 0.37350 (2) | 0.72038 (2) | 0.29387 (2) | 0.01775 (7) | |
| P2 | 0.52657 (4) | 0.71169 (3) | 0.39223 (3) | 0.01709 (10) | |
| Cl2 | 0.49095 (5) | 0.76659 (3) | 0.20300 (3) | 0.02801 (11) | |
| P1 | 0.26767 (5) | 0.68295 (3) | 0.39070 (3) | 0.01789 (10) | |
| Cl1 | 0.21431 (5) | 0.70236 (3) | 0.19602 (3) | 0.02769 (11) | |
| C15 | 0.58397 (18) | 0.83098 (12) | 0.43654 (11) | 0.0205 (4) | |
| C21 | 0.65066 (18) | 0.64235 (12) | 0.36247 (10) | 0.0197 (4) | |
| C1 | 0.14415 (18) | 0.76478 (12) | 0.40551 (10) | 0.0204 (4) | |
| C22 | 0.6350 (2) | 0.54049 (13) | 0.34074 (12) | 0.0265 (4) | |
| H22 | 0.560370 | 0.509092 | 0.342313 | 0.032* | |
| C14 | 0.48236 (18) | 0.64137 (12) | 0.48161 (10) | 0.0210 (4) | |
| H14A | 0.476103 | 0.568735 | 0.467879 | 0.025* | |
| H14B | 0.542004 | 0.650419 | 0.533661 | 0.025* | |
| C6 | 0.1054 (2) | 0.76797 (13) | 0.48502 (11) | 0.0249 (4) | |
| H6 | 0.140757 | 0.724948 | 0.529768 | 0.030* | |
| C2 | 0.09245 (19) | 0.83082 (13) | 0.34116 (11) | 0.0260 (4) | |
| H2 | 0.118529 | 0.830561 | 0.287077 | 0.031* | |
| C7 | 0.21698 (18) | 0.55270 (12) | 0.38018 (10) | 0.0207 (4) | |
| C13 | 0.36208 (18) | 0.68240 (13) | 0.49595 (10) | 0.0215 (4) | |
| H13A | 0.370715 | 0.751358 | 0.519686 | 0.026* | |
| H13B | 0.326977 | 0.639024 | 0.536248 | 0.026* | |
| C12 | 0.2606 (2) | 0.49003 (14) | 0.32171 (11) | 0.0270 (4) | |
| H12 | 0.310628 | 0.516750 | 0.284503 | 0.032* | |
| C26 | 0.75966 (19) | 0.68773 (13) | 0.35843 (11) | 0.0257 (4) | |
| H26 | 0.770965 | 0.756815 | 0.372732 | 0.031* | |
| C20 | 0.5739 (2) | 0.91723 (13) | 0.38600 (12) | 0.0304 (5) | |
| H20 | 0.534633 | 0.914102 | 0.328564 | 0.036* | |
| C16 | 0.6397 (2) | 0.83732 (13) | 0.52115 (12) | 0.0304 (5) | |
| H16 | 0.646276 | 0.779176 | 0.556421 | 0.036* | |
| C11 | 0.2310 (2) | 0.38811 (14) | 0.31777 (12) | 0.0312 (5) | |
| H11 | 0.261943 | 0.345151 | 0.278661 | 0.037* | |
| C5 | 0.0157 (2) | 0.83356 (14) | 0.49880 (12) | 0.0301 (4) | |
| H5 | −0.010607 | 0.834643 | 0.552797 | 0.036* | |
| C10 | 0.1568 (2) | 0.34991 (14) | 0.37081 (13) | 0.0328 (5) | |
| H10 | 0.134033 | 0.281117 | 0.366482 | 0.039* | |
| C4 | −0.0360 (2) | 0.89761 (14) | 0.43451 (13) | 0.0312 (4) | |
| H4 | −0.098031 | 0.941935 | 0.444143 | 0.037* | |
| C3 | 0.0033 (2) | 0.89654 (14) | 0.35634 (13) | 0.0315 (5) | |
| H3 | −0.031058 | 0.941224 | 0.312536 | 0.038* | |
| C8 | 0.1452 (2) | 0.51225 (14) | 0.43498 (12) | 0.0304 (5) | |
| H8 | 0.116448 | 0.554029 | 0.475911 | 0.036* | |
| C23 | 0.7278 (2) | 0.48546 (14) | 0.31701 (12) | 0.0321 (5) | |
| H23 | 0.717228 | 0.416174 | 0.303219 | 0.039* | |
| C24 | 0.8361 (2) | 0.53146 (15) | 0.31339 (13) | 0.0340 (5) | |
| H24 | 0.899763 | 0.493736 | 0.296997 | 0.041* | |
| C18 | 0.6773 (2) | 1.01266 (14) | 0.50304 (14) | 0.0352 (5) | |
| H18 | 0.710377 | 1.074463 | 0.525598 | 0.042* | |
| C25 | 0.8518 (2) | 0.63287 (15) | 0.33372 (13) | 0.0331 (5) | |
| H25 | 0.925850 | 0.664480 | 0.330632 | 0.040* | |
| C9 | 0.1153 (2) | 0.41071 (14) | 0.42998 (14) | 0.0365 (5) | |
| H9 | 0.066176 | 0.383301 | 0.467484 | 0.044* | |
| C17 | 0.6857 (2) | 0.92834 (15) | 0.55399 (13) | 0.0382 (5) | |
| H17 | 0.723121 | 0.932492 | 0.611836 | 0.046* | |
| C19 | 0.6212 (2) | 1.00800 (14) | 0.41946 (14) | 0.0369 (5) | |
| H19 | 0.614863 | 1.066626 | 0.384777 | 0.044* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.02259 (14) | 0.01802 (11) | 0.01213 (10) | −0.00133 (9) | 0.00118 (9) | 0.00200 (7) |
| P2 | 0.0214 (3) | 0.01345 (18) | 0.01584 (19) | −0.00144 (17) | 0.00119 (17) | 0.00135 (14) |
| Cl2 | 0.0307 (3) | 0.0362 (2) | 0.01787 (19) | −0.0014 (2) | 0.00609 (18) | 0.00668 (16) |
| P1 | 0.0218 (3) | 0.01728 (19) | 0.01408 (19) | −0.00303 (18) | 0.00138 (17) | 0.00037 (14) |
| Cl1 | 0.0308 (3) | 0.0328 (2) | 0.01717 (19) | −0.0022 (2) | −0.00358 (18) | −0.00072 (15) |
| C15 | 0.0229 (11) | 0.0156 (7) | 0.0234 (8) | −0.0010 (7) | 0.0045 (7) | −0.0025 (6) |
| C21 | 0.0225 (10) | 0.0179 (7) | 0.0178 (7) | −0.0005 (7) | 0.0006 (7) | 0.0010 (6) |
| C1 | 0.0221 (10) | 0.0181 (8) | 0.0202 (8) | −0.0048 (7) | 0.0013 (7) | −0.0021 (6) |
| C22 | 0.0293 (12) | 0.0194 (8) | 0.0305 (9) | −0.0031 (8) | 0.0035 (8) | −0.0023 (7) |
| C14 | 0.0269 (11) | 0.0179 (7) | 0.0166 (7) | −0.0038 (7) | −0.0012 (7) | 0.0035 (6) |
| C6 | 0.0304 (12) | 0.0232 (8) | 0.0210 (8) | −0.0036 (8) | 0.0037 (8) | −0.0025 (6) |
| C2 | 0.0284 (12) | 0.0261 (9) | 0.0234 (8) | 0.0000 (8) | 0.0038 (8) | 0.0036 (7) |
| C7 | 0.0228 (11) | 0.0185 (7) | 0.0201 (8) | −0.0017 (7) | 0.0011 (7) | 0.0011 (6) |
| C13 | 0.0268 (11) | 0.0235 (8) | 0.0135 (7) | −0.0042 (8) | 0.0014 (7) | 0.0022 (6) |
| C12 | 0.0322 (12) | 0.0249 (8) | 0.0241 (8) | −0.0037 (8) | 0.0052 (8) | −0.0016 (7) |
| C26 | 0.0279 (12) | 0.0190 (8) | 0.0291 (9) | −0.0026 (8) | 0.0011 (8) | −0.0037 (7) |
| C20 | 0.0444 (14) | 0.0192 (8) | 0.0277 (9) | −0.0040 (9) | 0.0059 (9) | 0.0013 (7) |
| C16 | 0.0397 (14) | 0.0199 (8) | 0.0285 (9) | −0.0020 (8) | −0.0043 (9) | −0.0014 (7) |
| C11 | 0.0373 (14) | 0.0234 (9) | 0.0320 (10) | −0.0006 (9) | 0.0028 (9) | −0.0073 (7) |
| C5 | 0.0336 (13) | 0.0288 (9) | 0.0296 (9) | −0.0050 (9) | 0.0101 (9) | −0.0084 (7) |
| C10 | 0.0360 (13) | 0.0165 (8) | 0.0439 (11) | −0.0033 (8) | −0.0001 (10) | 0.0021 (7) |
| C4 | 0.0269 (12) | 0.0261 (9) | 0.0412 (11) | 0.0005 (8) | 0.0070 (9) | −0.0087 (8) |
| C3 | 0.0312 (13) | 0.0282 (9) | 0.0343 (10) | 0.0041 (9) | 0.0023 (9) | 0.0029 (8) |
| C8 | 0.0361 (13) | 0.0224 (9) | 0.0351 (10) | −0.0032 (9) | 0.0133 (9) | −0.0003 (7) |
| C23 | 0.0397 (14) | 0.0215 (9) | 0.0350 (10) | 0.0028 (9) | 0.0054 (9) | −0.0069 (7) |
| C24 | 0.0303 (13) | 0.0339 (10) | 0.0382 (11) | 0.0061 (9) | 0.0062 (9) | −0.0102 (8) |
| C18 | 0.0346 (14) | 0.0208 (9) | 0.0513 (12) | −0.0077 (9) | 0.0100 (10) | −0.0129 (8) |
| C25 | 0.0230 (12) | 0.0346 (10) | 0.0423 (11) | −0.0036 (9) | 0.0067 (9) | −0.0081 (8) |
| C9 | 0.0394 (15) | 0.0250 (9) | 0.0482 (12) | −0.0053 (9) | 0.0171 (11) | 0.0078 (8) |
| C17 | 0.0452 (16) | 0.0302 (10) | 0.0359 (11) | −0.0046 (10) | −0.0046 (10) | −0.0122 (8) |
| C19 | 0.0489 (16) | 0.0175 (8) | 0.0462 (12) | −0.0053 (9) | 0.0134 (11) | 0.0004 (8) |
| Ni1—P2 | 2.1509 (5) | C12—C11 | 1.395 (3) |
| Ni1—Cl2 | 2.2001 (5) | C26—H26 | 0.9500 |
| Ni1—P1 | 2.1522 (5) | C26—C25 | 1.383 (3) |
| Ni1—Cl1 | 2.2053 (5) | C20—H20 | 0.9500 |
| P2—C15 | 1.8142 (17) | C20—C19 | 1.392 (3) |
| P2—C21 | 1.810 (2) | C16—H16 | 0.9500 |
| P2—C14 | 1.8322 (17) | C16—C17 | 1.387 (3) |
| P1—C1 | 1.821 (2) | C11—H11 | 0.9500 |
| P1—C7 | 1.8246 (17) | C11—C10 | 1.379 (3) |
| P1—C13 | 1.8371 (17) | C5—H5 | 0.9500 |
| C15—C20 | 1.393 (2) | C5—C4 | 1.386 (3) |
| C15—C16 | 1.393 (2) | C10—H10 | 0.9500 |
| C21—C22 | 1.402 (2) | C10—C9 | 1.376 (3) |
| C21—C26 | 1.390 (3) | C4—H4 | 0.9500 |
| C1—C6 | 1.399 (3) | C4—C3 | 1.382 (3) |
| C1—C2 | 1.403 (2) | C3—H3 | 0.9500 |
| C22—H22 | 0.9500 | C8—H8 | 0.9500 |
| C22—C23 | 1.385 (3) | C8—C9 | 1.391 (3) |
| C14—H14A | 0.9900 | C23—H23 | 0.9500 |
| C14—H14B | 0.9900 | C23—C24 | 1.385 (3) |
| C14—C13 | 1.523 (3) | C24—H24 | 0.9500 |
| C6—H6 | 0.9500 | C24—C25 | 1.391 (3) |
| C6—C5 | 1.386 (3) | C18—H18 | 0.9500 |
| C2—H2 | 0.9500 | C18—C17 | 1.376 (3) |
| C2—C3 | 1.388 (3) | C18—C19 | 1.379 (3) |
| C7—C12 | 1.394 (3) | C25—H25 | 0.9500 |
| C7—C8 | 1.391 (3) | C9—H9 | 0.9500 |
| C13—H13A | 0.9900 | C17—H17 | 0.9500 |
| C13—H13B | 0.9900 | C19—H19 | 0.9500 |
| C12—H12 | 0.9500 | ||
| P2—Ni1—Cl2 | 89.05 (2) | C7—C12—H12 | 120.0 |
| P2—Ni1—P1 | 87.178 (19) | C7—C12—C11 | 120.09 (18) |
| P2—Ni1—Cl1 | 170.567 (19) | C11—C12—H12 | 120.0 |
| Cl2—Ni1—Cl1 | 94.948 (19) | C21—C26—H26 | 119.8 |
| P1—Ni1—Cl2 | 175.16 (2) | C25—C26—C21 | 120.37 (17) |
| P1—Ni1—Cl1 | 89.23 (2) | C25—C26—H26 | 119.8 |
| C15—P2—Ni1 | 115.79 (6) | C15—C20—H20 | 119.9 |
| C15—P2—C14 | 105.82 (8) | C19—C20—C15 | 120.16 (18) |
| C21—P2—Ni1 | 114.50 (6) | C19—C20—H20 | 119.9 |
| C21—P2—C15 | 107.33 (9) | C15—C16—H16 | 119.9 |
| C21—P2—C14 | 105.16 (8) | C17—C16—C15 | 120.13 (17) |
| C14—P2—Ni1 | 107.37 (6) | C17—C16—H16 | 119.9 |
| C1—P1—Ni1 | 118.89 (6) | C12—C11—H11 | 120.1 |
| C1—P1—C7 | 109.84 (9) | C10—C11—C12 | 119.81 (18) |
| C1—P1—C13 | 103.81 (8) | C10—C11—H11 | 120.1 |
| C7—P1—Ni1 | 111.01 (6) | C6—C5—H5 | 119.7 |
| C7—P1—C13 | 102.16 (8) | C6—C5—C4 | 120.60 (18) |
| C13—P1—Ni1 | 109.60 (7) | C4—C5—H5 | 119.7 |
| C20—C15—P2 | 120.32 (14) | C11—C10—H10 | 119.8 |
| C20—C15—C16 | 119.18 (16) | C9—C10—C11 | 120.49 (17) |
| C16—C15—P2 | 120.49 (12) | C9—C10—H10 | 119.8 |
| C22—C21—P2 | 118.80 (15) | C5—C4—H4 | 120.2 |
| C26—C21—P2 | 121.96 (13) | C3—C4—C5 | 119.5 (2) |
| C26—C21—C22 | 119.22 (18) | C3—C4—H4 | 120.2 |
| C6—C1—P1 | 119.51 (14) | C2—C3—H3 | 119.7 |
| C6—C1—C2 | 118.69 (18) | C4—C3—C2 | 120.65 (18) |
| C2—C1—P1 | 121.61 (14) | C4—C3—H3 | 119.7 |
| C21—C22—H22 | 119.9 | C7—C8—H8 | 119.9 |
| C23—C22—C21 | 120.3 (2) | C7—C8—C9 | 120.13 (18) |
| C23—C22—H22 | 119.9 | C9—C8—H8 | 119.9 |
| P2—C14—H14A | 110.3 | C22—C23—H23 | 120.0 |
| P2—C14—H14B | 110.3 | C22—C23—C24 | 119.97 (18) |
| H14A—C14—H14B | 108.5 | C24—C23—H23 | 120.0 |
| C13—C14—P2 | 107.13 (11) | C23—C24—H24 | 120.0 |
| C13—C14—H14A | 110.3 | C23—C24—C25 | 120.1 (2) |
| C13—C14—H14B | 110.3 | C25—C24—H24 | 120.0 |
| C1—C6—H6 | 119.8 | C17—C18—H18 | 119.8 |
| C5—C6—C1 | 120.32 (18) | C17—C18—C19 | 120.42 (18) |
| C5—C6—H6 | 119.8 | C19—C18—H18 | 119.8 |
| C1—C2—H2 | 119.9 | C26—C25—C24 | 120.1 (2) |
| C3—C2—C1 | 120.16 (17) | C26—C25—H25 | 120.0 |
| C3—C2—H2 | 119.9 | C24—C25—H25 | 120.0 |
| C12—C7—P1 | 119.17 (14) | C10—C9—C8 | 120.13 (19) |
| C8—C7—P1 | 121.21 (13) | C10—C9—H9 | 119.9 |
| C8—C7—C12 | 119.30 (16) | C8—C9—H9 | 119.9 |
| P1—C13—H13A | 110.5 | C16—C17—H17 | 119.9 |
| P1—C13—H13B | 110.5 | C18—C17—C16 | 120.21 (19) |
| C14—C13—P1 | 106.10 (11) | C18—C17—H17 | 119.9 |
| C14—C13—H13A | 110.5 | C20—C19—H19 | 120.1 |
| C14—C13—H13B | 110.5 | C18—C19—C20 | 119.88 (18) |
| H13A—C13—H13B | 108.7 | C18—C19—H19 | 120.1 |
| Ni1—P2—C15—C20 | −31.2 (2) | C1—C6—C5—C4 | −0.7 (3) |
| Ni1—P2—C15—C16 | 149.50 (16) | C1—C2—C3—C4 | −0.3 (3) |
| Ni1—P2—C21—C22 | −61.27 (14) | C22—C21—C26—C25 | −0.3 (3) |
| Ni1—P2—C21—C26 | 117.04 (14) | C22—C23—C24—C25 | 0.1 (3) |
| Ni1—P2—C14—C13 | −45.12 (12) | C14—P2—C15—C20 | −149.97 (18) |
| Ni1—P1—C1—C6 | −154.47 (13) | C14—P2—C15—C16 | 30.7 (2) |
| Ni1—P1—C1—C2 | 20.50 (17) | C14—P2—C21—C22 | 56.34 (15) |
| Ni1—P1—C7—C12 | 7.63 (17) | C14—P2—C21—C26 | −125.35 (15) |
| Ni1—P1—C7—C8 | −178.78 (15) | C6—C1—C2—C3 | −1.1 (3) |
| Ni1—P1—C13—C14 | −35.94 (12) | C6—C5—C4—C3 | −0.6 (3) |
| P2—C15—C20—C19 | −178.07 (18) | C2—C1—C6—C5 | 1.5 (3) |
| P2—C15—C16—C17 | 178.57 (19) | C7—P1—C1—C6 | 76.16 (16) |
| P2—C21—C22—C23 | 179.48 (14) | C7—P1—C1—C2 | −108.87 (16) |
| P2—C21—C26—C25 | −178.66 (15) | C7—P1—C13—C14 | 81.83 (13) |
| P2—C14—C13—P1 | 49.74 (13) | C7—C12—C11—C10 | 1.2 (3) |
| P1—C1—C6—C5 | 176.65 (15) | C7—C8—C9—C10 | 0.0 (4) |
| P1—C1—C2—C3 | −176.07 (16) | C13—P1—C1—C6 | −32.46 (17) |
| P1—C7—C12—C11 | 174.53 (16) | C13—P1—C1—C2 | 142.51 (15) |
| P1—C7—C8—C9 | −174.99 (18) | C13—P1—C7—C12 | −109.14 (16) |
| C15—P2—C21—C22 | 168.70 (14) | C13—P1—C7—C8 | 64.45 (19) |
| C15—P2—C21—C26 | −12.98 (16) | C12—C7—C8—C9 | −1.4 (3) |
| C15—P2—C14—C13 | 79.11 (13) | C12—C11—C10—C9 | −2.6 (3) |
| C15—C20—C19—C18 | −0.5 (4) | C26—C21—C22—C23 | 1.1 (3) |
| C15—C16—C17—C18 | −0.5 (4) | C20—C15—C16—C17 | −0.8 (3) |
| C21—P2—C15—C20 | 98.11 (18) | C16—C15—C20—C19 | 1.3 (3) |
| C21—P2—C15—C16 | −81.21 (18) | C11—C10—C9—C8 | 2.0 (4) |
| C21—P2—C14—C13 | −167.46 (11) | C5—C4—C3—C2 | 1.1 (3) |
| C21—C22—C23—C24 | −1.0 (3) | C8—C7—C12—C11 | 0.8 (3) |
| C21—C26—C25—C24 | −0.5 (3) | C23—C24—C25—C26 | 0.7 (3) |
| C1—P1—C7—C12 | 141.15 (15) | C17—C18—C19—C20 | −0.7 (4) |
| C1—P1—C7—C8 | −45.26 (19) | C19—C18—C17—C16 | 1.2 (4) |
| C1—P1—C13—C14 | −163.93 (11) |
| C12H4Cu2O10 | Synchrotron radiation, λ = 0.4859 Å |
| Mr = 435.23 | Cell parameters from 5854 reflections |
| Cubic, Fm3m | θ = 1.1–18.9° |
| a = 26.2857 (6) Å | µ = 0.50 mm−1 |
| V = 18161.8 (12) Å3 | T = 150 K |
| Z = 24 | Blocks, blue |
| F(000) = 5136 | 0.3 × 0.1 × 0.05 mm |
| Dx = 0.959 Mg m−3 |
| Newport IS4CCD diffractometer | 1175 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 948 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.127 |
| small angle phi rotation fixed target serial scans | θmax = 18.9°, θmin = 1.1° |
| Absorption correction: empirical (using intensity measurements) 'DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −34→35 |
| Tmin = 0.960, Tmax = 1 | k = −35→34 |
| 24456 measured reflections | l = −34→34 |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.035 | H-atom parameters constrained |
| wR(F2) = 0.090 | w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.94 | (Δ/σ)max < 0.001 |
| 1175 reflections | Δρmax = 0.44 e Å−3 |
| 36 parameters | Δρmin = −0.33 e Å−3 |
| 0 restraints |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified from photographs of the sample taken in-situ and by image recognition algorithms. Small rotations were carried out on 41 identified crystals. Out of 41 crystals, 22 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.28523 (2) | 0.500000 | 0.21477 (2) | 0.04585 (16) | |
| O1 | 0.31676 (6) | 0.55229 (6) | 0.25686 (6) | 0.0688 (4) | |
| C3 | 0.30111 (10) | 0.63414 (7) | 0.36586 (7) | 0.0547 (6) | |
| H3 | 0.272239 | 0.619677 | 0.380323 | 0.066* | |
| C2 | 0.32264 (7) | 0.61247 (9) | 0.32264 (7) | 0.0520 (5) | |
| C1 | 0.29698 (8) | 0.56883 (9) | 0.29698 (8) | 0.0542 (5) | |
| O2 | 0.34293 (9) | 0.500000 | 0.15707 (9) | 0.152 (2) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.04718 (19) | 0.0432 (2) | 0.04718 (19) | 0.000 | 0.01727 (16) | 0.000 |
| O1 | 0.0677 (9) | 0.0666 (8) | 0.0721 (9) | −0.0157 (7) | 0.0201 (7) | −0.0169 (7) |
| C3 | 0.0591 (14) | 0.0525 (8) | 0.0525 (8) | −0.0011 (8) | 0.0011 (8) | 0.0041 (10) |
| C2 | 0.0533 (8) | 0.0494 (12) | 0.0533 (8) | 0.0010 (7) | −0.0001 (10) | 0.0010 (7) |
| C1 | 0.0593 (8) | 0.0442 (12) | 0.0593 (8) | 0.0017 (7) | 0.0070 (11) | 0.0017 (7) |
| O2 | 0.130 (3) | 0.194 (5) | 0.130 (3) | 0.000 | 0.097 (3) | 0.000 |
| Cu1—Cu1i | 2.6193 (7) | O1—C1 | 1.2536 (18) |
| Cu1—O1ii | 1.9494 (14) | C3—H3 | 0.9300 |
| Cu1—O1 | 1.9494 (14) | C3—C2 | 1.3913 (19) |
| Cu1—O1iii | 1.9494 (14) | C3—C2v | 1.3913 (19) |
| Cu1—O1iv | 1.9494 (14) | C2—C1 | 1.492 (4) |
| Cu1—O2 | 2.145 (3) | ||
| O1—Cu1—Cu1i | 84.22 (4) | O1iv—Cu1—O2 | 95.78 (4) |
| O1iv—Cu1—Cu1i | 84.22 (4) | O2—Cu1—Cu1i | 180.000 (17) |
| O1iii—Cu1—Cu1i | 84.22 (4) | C1—O1—Cu1 | 123.06 (15) |
| O1ii—Cu1—Cu1i | 84.22 (4) | C2v—C3—H3 | 119.9 |
| O1ii—Cu1—O1iv | 89.16 (10) | C2—C3—H3 | 119.9 |
| O1ii—Cu1—O1iii | 89.68 (10) | C2v—C3—C2 | 120.2 (3) |
| O1iii—Cu1—O1iv | 168.44 (8) | C3vi—C2—C3 | 119.8 (3) |
| O1ii—Cu1—O1 | 168.45 (8) | C3vi—C2—C1 | 120.01 (13) |
| O1iii—Cu1—O1 | 89.16 (10) | C3—C2—C1 | 120.01 (13) |
| O1iv—Cu1—O1 | 89.68 (10) | O1vii—C1—O1 | 125.3 (3) |
| O1—Cu1—O2 | 95.78 (4) | O1—C1—C2 | 117.35 (13) |
| O1iii—Cu1—O2 | 95.78 (4) | O1vii—C1—C2 | 117.35 (13) |
| O1ii—Cu1—O2 | 95.78 (4) | ||
| Cu1—O1—C1—O1vii | 4.6 (4) | C3—C2—C1—O1vii | −1.9 (4) |
| Cu1—O1—C1—C2 | −173.99 (17) | C3vi—C2—C1—O1vii | −176.8 (2) |
| C3—C2—C1—O1 | 176.8 (2) | C2v—C3—C2—C3vi | 0.1 (5) |
| C3vi—C2—C1—O1 | 1.9 (4) | C2v—C3—C2—C1 | −174.80 (18) |
| Symmetry codes: (i) −x+1/2, −y+1, −z+1/2; (ii) −z+1/2, −y+1, −x+1/2; (iii) −z+1/2, y, −x+1/2; (iv) x, −y+1, z; (v) z, −x+1, −y+1; (vi) −y+1, −z+1, x; (vii) z, y, x. |
| C12H4Cu2O10 | Synchrotron radiation, λ = 0.4859 Å |
| Mr = 435.23 | Cell parameters from 17856 reflections |
| Cubic, Fm3m | θ = 1.1–18.9° |
| a = 26.2454 (3) Å | µ = 0.50 mm−1 |
| V = 18078.4 (6) Å3 | T = 150 K |
| Z = 24 | Blocks, blue |
| F(000) = 5136 | 0.3 × 0.1 × 0.05 mm |
| Dx = 0.959 Mg m−3 |
| Newport IS4CCD diffractometer | 1164 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 1027 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.143 |
| small angle phi rotation fixed target serial scans | θmax = 18.9°, θmin = 0.9° |
| Absorption correction: empirical (using intensity measurements) 'DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −34→34 |
| Tmin = 0.996, Tmax = 1 | k = −34→34 |
| 69416 measured reflections | l = −34→34 |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
| wR(F2) = 0.125 | w = 1/[σ2(Fo2) + (0.0932P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max = 0.003 |
| 1164 reflections | Δρmax = 0.38 e Å−3 |
| 36 parameters | Δρmin = −0.37 e Å−3 |
| 0 restraints |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified by collecting single diffraction images at 1296 locations on the substrate. Small rotations were carried out on 66 identified crystals. Out of 66 crystals, 63 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.71476 (2) | 0.500000 | 0.21476 (2) | 0.0423 (2) | |
| O1 | 0.68324 (7) | 0.55235 (7) | 0.25680 (6) | 0.0675 (5) | |
| C3 | 0.69883 (11) | 0.63429 (8) | 0.36571 (8) | 0.0513 (6) | |
| H3 | 0.727773 | 0.619832 | 0.380167 | 0.062* | |
| C2 | 0.67746 (8) | 0.61245 (10) | 0.32254 (8) | 0.0500 (6) | |
| C1 | 0.70316 (9) | 0.56897 (10) | 0.29684 (9) | 0.0505 (5) | |
| O2 | 0.65697 (10) | 0.500000 | 0.15697 (10) | 0.154 (3) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.0443 (2) | 0.0385 (3) | 0.0443 (2) | 0.000 | −0.01727 (15) | 0.000 |
| O1 | 0.0662 (9) | 0.0660 (9) | 0.0703 (10) | 0.0175 (7) | −0.0237 (8) | −0.0192 (7) |
| C3 | 0.0533 (13) | 0.0503 (8) | 0.0503 (8) | 0.0021 (8) | −0.0021 (8) | 0.0038 (11) |
| C2 | 0.0523 (8) | 0.0453 (12) | 0.0523 (8) | −0.0013 (7) | 0.0001 (10) | 0.0013 (7) |
| C1 | 0.0553 (9) | 0.0409 (12) | 0.0553 (9) | −0.0020 (8) | −0.0099 (11) | 0.0020 (8) |
| O2 | 0.124 (3) | 0.213 (7) | 0.124 (3) | 0.000 | −0.097 (4) | 0.000 |
| Cu1—Cu1i | 2.6165 (7) | O1—C1 | 1.252 (2) |
| Cu1—O1 | 1.9466 (16) | C3—H3 | 0.9300 |
| Cu1—O1ii | 1.9466 (16) | C3—C2v | 1.3882 (19) |
| Cu1—O1iii | 1.9466 (16) | C3—C2 | 1.3882 (19) |
| Cu1—O1iv | 1.9466 (16) | C2—C1 | 1.487 (4) |
| Cu1—O2 | 2.145 (4) | ||
| O1ii—Cu1—Cu1i | 84.24 (5) | O1iv—Cu1—O2 | 95.76 (5) |
| O1iv—Cu1—Cu1i | 84.24 (5) | O2—Cu1—Cu1i | 180.00 (10) |
| O1iii—Cu1—Cu1i | 84.24 (5) | C1—O1—Cu1 | 122.96 (16) |
| O1—Cu1—Cu1i | 84.24 (5) | C2—C3—H3 | 119.6 |
| O1—Cu1—O1iv | 168.48 (9) | C2v—C3—H3 | 119.6 |
| O1—Cu1—O1iii | 89.06 (12) | C2—C3—C2v | 120.7 (3) |
| O1iii—Cu1—O1iv | 89.79 (12) | C3—C2—C3vi | 119.3 (3) |
| O1—Cu1—O1ii | 89.79 (12) | C3—C2—C1 | 120.25 (14) |
| O1iii—Cu1—O1ii | 168.48 (9) | C3vi—C2—C1 | 120.25 (14) |
| O1iv—Cu1—O1ii | 89.05 (12) | O1vii—C1—O1 | 125.4 (3) |
| O1ii—Cu1—O2 | 95.76 (5) | O1—C1—C2 | 117.29 (14) |
| O1iii—Cu1—O2 | 95.76 (5) | O1vii—C1—C2 | 117.29 (14) |
| O1—Cu1—O2 | 95.76 (5) | ||
| Cu1—O1—C1—O1vii | −5.0 (5) | C3vi—C2—C1—O1vii | 176.9 (3) |
| Cu1—O1—C1—C2 | 174.20 (18) | C3—C2—C1—O1vii | 2.4 (4) |
| C3vi—C2—C1—O1 | −2.4 (4) | C2v—C3—C2—C3vi | 0.1 (6) |
| C3—C2—C1—O1 | −176.9 (3) | C2v—C3—C2—C1 | 174.7 (2) |
| Symmetry codes: (i) −x+3/2, −y+1, −z+1/2; (ii) x, −y+1, z; (iii) z+1/2, y, x−1/2; (iv) z+1/2, −y+1, x−1/2; (v) −z+1, x, −y+1; (vi) y, −z+1, −x+1; (vii) −z+1, y, −x+1. |
| C15H10ClN3 | Dx = 1.464 Mg m−3 |
| Mr = 267.71 | Synchrotron radiation, λ = 0.4859 Å |
| Orthorhombic, Pna21 | Cell parameters from 9482 reflections |
| a = 29.8128 (17) Å | θ = 1.6–18.9° |
| b = 3.8321 (2) Å | µ = 0.12 mm−1 |
| c = 10.6331 (4) Å | T = 150 K |
| V = 1214.79 (10) Å3 | Plates, colourless |
| Z = 4 | 0.3 × 0.1 × 0.02 mm |
| F(000) = 552 |
| Newport IS4CCD diffractometer | 2944 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 2466 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.138 |
| small angle phi rotation fixed target serial scans | θmax = 18.9°, θmin = 1.6° |
| Absorption correction: empirical (using intensity measurements) 'DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −39→39 |
| Tmin = 0.991, Tmax = 1 | k = −5→5 |
| 33859 measured reflections | l = −14→14 |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.038 | w = 1/[σ2(Fo2) + (0.0435P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.085 | (Δ/σ)max < 0.001 |
| S = 0.97 | Δρmax = 0.17 e Å−3 |
| 2944 reflections | Δρmin = −0.24 e Å−3 |
| 172 parameters | Absolute structure: Flack x determined using 991 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). |
| 1 restraint | Absolute structure parameter: 0.47 (9) |
| Primary atom site location: dual |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified from photographs of the sample taken in-situ and by image recognition algorithms. Small rotations were carried out on 296 identified crystals. Out of 296 crystals, 121 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.33911 (2) | 0.86035 (18) | 0.84984 (7) | 0.03549 (17) | |
| N2 | 0.39782 (7) | 0.4659 (6) | 0.4860 (2) | 0.0267 (5) | |
| N3 | 0.49413 (8) | 0.3745 (6) | 0.6893 (2) | 0.0300 (5) | |
| N1 | 0.28941 (8) | 0.7441 (6) | 0.3738 (2) | 0.0323 (5) | |
| C10 | 0.42214 (10) | 0.4630 (7) | 0.5928 (2) | 0.0266 (5) | |
| C9 | 0.40510 (10) | 0.5829 (7) | 0.7079 (2) | 0.0280 (5) | |
| H9 | 0.422410 | 0.578711 | 0.780671 | 0.034* | |
| C11 | 0.46897 (9) | 0.3321 (7) | 0.5851 (2) | 0.0262 (5) | |
| C8 | 0.36147 (10) | 0.7077 (7) | 0.7091 (3) | 0.0286 (6) | |
| C7 | 0.33598 (10) | 0.7118 (7) | 0.6018 (3) | 0.0288 (6) | |
| H7 | 0.306659 | 0.794692 | 0.602571 | 0.035* | |
| C6 | 0.35559 (9) | 0.5870 (7) | 0.4910 (2) | 0.0267 (5) | |
| C12 | 0.48532 (10) | 0.1771 (7) | 0.4763 (2) | 0.0290 (6) | |
| H12 | 0.467002 | 0.150843 | 0.406132 | 0.035* | |
| C3 | 0.32401 (11) | 0.4751 (8) | 0.1503 (3) | 0.0344 (6) | |
| H3 | 0.335501 | 0.383415 | 0.076034 | 0.041* | |
| C5 | 0.33018 (9) | 0.5931 (7) | 0.3705 (2) | 0.0274 (6) | |
| C4 | 0.34837 (10) | 0.4535 (8) | 0.2609 (3) | 0.0301 (6) | |
| H4 | 0.376427 | 0.347513 | 0.261913 | 0.036* | |
| C15 | 0.53661 (10) | 0.2686 (8) | 0.6843 (3) | 0.0323 (6) | |
| H15 | 0.554436 | 0.301067 | 0.755082 | 0.039* | |
| C1 | 0.26654 (10) | 0.7614 (8) | 0.2659 (3) | 0.0367 (7) | |
| H1 | 0.238314 | 0.864599 | 0.267271 | 0.044* | |
| C13 | 0.52927 (10) | 0.0623 (7) | 0.4740 (3) | 0.0319 (6) | |
| H13 | 0.540788 | −0.046698 | 0.402820 | 0.038* | |
| C2 | 0.28241 (11) | 0.6344 (8) | 0.1517 (3) | 0.0362 (7) | |
| H2 | 0.265551 | 0.656045 | 0.078478 | 0.043* | |
| C14 | 0.55596 (10) | 0.1122 (8) | 0.5793 (3) | 0.0330 (6) | |
| H14 | 0.585863 | 0.043140 | 0.579847 | 0.040* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0416 (4) | 0.0387 (4) | 0.0261 (3) | 0.0042 (3) | 0.0054 (3) | −0.0038 (3) |
| N2 | 0.0304 (12) | 0.0256 (11) | 0.0241 (10) | −0.0013 (8) | 0.0008 (8) | 0.0009 (9) |
| N3 | 0.0343 (13) | 0.0304 (12) | 0.0253 (11) | −0.0022 (10) | −0.0007 (9) | 0.0012 (9) |
| N1 | 0.0279 (12) | 0.0345 (13) | 0.0346 (15) | 0.0005 (9) | 0.0001 (9) | 0.0030 (10) |
| C10 | 0.0318 (13) | 0.0233 (12) | 0.0245 (11) | −0.0026 (10) | 0.0003 (10) | 0.0007 (10) |
| C9 | 0.0328 (14) | 0.0265 (14) | 0.0248 (12) | −0.0032 (10) | −0.0002 (10) | 0.0007 (10) |
| C11 | 0.0290 (13) | 0.0248 (13) | 0.0249 (12) | −0.0030 (10) | 0.0005 (10) | 0.0045 (10) |
| C8 | 0.0368 (15) | 0.0247 (14) | 0.0242 (12) | −0.0003 (11) | 0.0050 (10) | −0.0010 (10) |
| C7 | 0.0325 (14) | 0.0277 (13) | 0.0262 (13) | −0.0007 (10) | 0.0028 (10) | 0.0014 (10) |
| C6 | 0.0303 (13) | 0.0255 (13) | 0.0243 (12) | −0.0020 (10) | 0.0016 (10) | 0.0010 (10) |
| C12 | 0.0322 (14) | 0.0281 (13) | 0.0268 (13) | −0.0004 (10) | −0.0005 (10) | 0.0008 (11) |
| C3 | 0.0373 (15) | 0.0362 (16) | 0.0297 (13) | −0.0058 (12) | −0.0018 (11) | 0.0002 (12) |
| C5 | 0.0293 (13) | 0.0258 (12) | 0.0272 (15) | −0.0026 (9) | 0.0019 (9) | 0.0037 (10) |
| C4 | 0.0300 (14) | 0.0336 (16) | 0.0268 (12) | −0.0034 (10) | 0.0005 (10) | 0.0003 (11) |
| C15 | 0.0297 (14) | 0.0362 (16) | 0.0309 (14) | −0.0028 (11) | −0.0029 (11) | 0.0071 (11) |
| C1 | 0.0308 (15) | 0.0404 (17) | 0.0389 (15) | −0.0011 (11) | −0.0025 (12) | 0.0064 (13) |
| C13 | 0.0362 (15) | 0.0289 (14) | 0.0305 (14) | 0.0021 (11) | 0.0066 (11) | 0.0016 (11) |
| C2 | 0.0370 (16) | 0.0402 (17) | 0.0314 (15) | −0.0078 (13) | −0.0066 (12) | 0.0048 (12) |
| C14 | 0.0316 (14) | 0.0321 (15) | 0.0352 (14) | 0.0014 (11) | 0.0007 (11) | 0.0069 (11) |
| Cl1—C8 | 1.740 (3) | C12—H12 | 0.9300 |
| N2—C10 | 1.347 (3) | C12—C13 | 1.382 (4) |
| N2—C6 | 1.343 (3) | C3—H3 | 0.9300 |
| N3—C11 | 1.348 (3) | C3—C4 | 1.384 (4) |
| N3—C15 | 1.331 (4) | C3—C2 | 1.383 (5) |
| N1—C5 | 1.347 (3) | C5—C4 | 1.392 (4) |
| N1—C1 | 1.336 (4) | C4—H4 | 0.9300 |
| C10—C9 | 1.403 (4) | C15—H15 | 0.9300 |
| C10—C11 | 1.486 (4) | C15—C14 | 1.392 (4) |
| C9—H9 | 0.9300 | C1—H1 | 0.9300 |
| C9—C8 | 1.386 (4) | C1—C2 | 1.392 (4) |
| C11—C12 | 1.389 (4) | C13—H13 | 0.9300 |
| C8—C7 | 1.371 (4) | C13—C14 | 1.387 (4) |
| C7—H7 | 0.9300 | C2—H2 | 0.9300 |
| C7—C6 | 1.399 (4) | C14—H14 | 0.9300 |
| C6—C5 | 1.489 (3) | ||
| C6—N2—C10 | 118.3 (2) | C4—C3—H3 | 120.4 |
| C15—N3—C11 | 117.4 (2) | C2—C3—H3 | 120.4 |
| C1—N1—C5 | 117.3 (2) | C2—C3—C4 | 119.2 (3) |
| N2—C10—C9 | 122.5 (2) | N1—C5—C6 | 116.3 (2) |
| N2—C10—C11 | 117.5 (2) | N1—C5—C4 | 122.6 (2) |
| C9—C10—C11 | 119.9 (2) | C4—C5—C6 | 121.1 (2) |
| C10—C9—H9 | 121.3 | C3—C4—C5 | 118.9 (3) |
| C8—C9—C10 | 117.4 (2) | C3—C4—H4 | 120.5 |
| C8—C9—H9 | 121.3 | C5—C4—H4 | 120.5 |
| N3—C11—C10 | 115.9 (2) | N3—C15—H15 | 118.0 |
| N3—C11—C12 | 122.8 (2) | N3—C15—C14 | 123.9 (3) |
| C12—C11—C10 | 121.3 (2) | C14—C15—H15 | 118.0 |
| C9—C8—Cl1 | 118.9 (2) | N1—C1—H1 | 118.0 |
| C7—C8—Cl1 | 120.0 (2) | N1—C1—C2 | 124.0 (3) |
| C7—C8—C9 | 121.1 (3) | C2—C1—H1 | 118.0 |
| C8—C7—H7 | 121.1 | C12—C13—H13 | 120.5 |
| C8—C7—C6 | 117.7 (3) | C12—C13—C14 | 119.0 (3) |
| C6—C7—H7 | 121.1 | C14—C13—H13 | 120.5 |
| N2—C6—C7 | 122.9 (2) | C3—C2—C1 | 117.9 (3) |
| N2—C6—C5 | 116.6 (2) | C3—C2—H2 | 121.0 |
| C7—C6—C5 | 120.4 (2) | C1—C2—H2 | 121.0 |
| C11—C12—H12 | 120.5 | C15—C14—H14 | 121.0 |
| C13—C12—C11 | 118.9 (3) | C13—C14—C15 | 118.0 (3) |
| C13—C12—H12 | 120.5 | C13—C14—H14 | 121.0 |
| Cl1—C8—C7—C6 | 179.8 (2) | C11—N3—C15—C14 | −1.3 (4) |
| N2—C10—C9—C8 | 0.0 (4) | C11—C10—C9—C8 | 178.9 (2) |
| N2—C10—C11—N3 | 171.7 (2) | C11—C12—C13—C14 | −1.4 (4) |
| N2—C10—C11—C12 | −8.1 (4) | C8—C7—C6—N2 | −0.1 (4) |
| N2—C6—C5—N1 | −174.1 (2) | C8—C7—C6—C5 | −178.3 (2) |
| N2—C6—C5—C4 | 5.0 (4) | C7—C6—C5—N1 | 4.2 (4) |
| N3—C11—C12—C13 | −0.3 (4) | C7—C6—C5—C4 | −176.7 (3) |
| N3—C15—C14—C13 | −0.3 (4) | C6—N2—C10—C9 | −0.4 (4) |
| N1—C5—C4—C3 | 1.0 (4) | C6—N2—C10—C11 | −179.3 (2) |
| N1—C1—C2—C3 | 1.2 (5) | C6—C5—C4—C3 | −178.0 (2) |
| C10—N2—C6—C7 | 0.4 (4) | C12—C13—C14—C15 | 1.6 (4) |
| C10—N2—C6—C5 | 178.7 (2) | C5—N1—C1—C2 | −0.2 (4) |
| C10—C9—C8—Cl1 | −179.8 (2) | C4—C3—C2—C1 | −1.1 (4) |
| C10—C9—C8—C7 | 0.3 (4) | C15—N3—C11—C10 | −178.2 (2) |
| C10—C11—C12—C13 | 179.5 (2) | C15—N3—C11—C12 | 1.6 (4) |
| C9—C10—C11—N3 | −7.2 (4) | C1—N1—C5—C6 | 178.1 (2) |
| C9—C10—C11—C12 | 173.0 (2) | C1—N1—C5—C4 | −1.0 (4) |
| C9—C8—C7—C6 | −0.3 (4) | C2—C3—C4—C5 | 0.1 (4) |
| C15H10ClN3 | Dx = 1.464 Mg m−3 |
| Mr = 267.71 | Synchrotron radiation, λ = 0.4859 Å |
| Orthorhombic, Pna21 | Cell parameters from 17806 reflections |
| a = 29.815 (3) Å | θ = 1.6–18.9° |
| b = 3.8313 (3) Å | µ = 0.12 mm−1 |
| c = 10.6315 (7) Å | T = 150 K |
| V = 1214.45 (17) Å3 | Plates, colourless |
| Z = 4 | 0.3 × 0.1 × 0.02 mm |
| F(000) = 552 |
| Newport IS4CCD diffractometer | 2969 independent reflections |
| Radiation source: Synchrotron, Undulator, I19, DLS, RAL | 2659 reflections with I > 2σ(I) |
| Double crystal Silicon 111 monochromator | Rint = 0.115 |
| small angle phi rotation fixed target serial scans | θmax = 18.9°, θmin = 1.6° |
| Absorption correction: empirical (using intensity measurements) 'DIALS 3.24.3-g547fa28c8-release Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics' | h = −39→39 |
| Tmin = 0.986, Tmax = 1 | k = −5→5 |
| 49789 measured reflections | l = −14→14 |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.031 | w = 1/[σ2(Fo2) + (0.0464P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.078 | (Δ/σ)max < 0.001 |
| S = 1.04 | Δρmax = 0.21 e Å−3 |
| 2969 reflections | Δρmin = −0.21 e Å−3 |
| 172 parameters | Absolute structure: Flack x determined using 1128 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). |
| 1 restraint | Absolute structure parameter: 0.35 (7) |
| Primary atom site location: dual |
Experimental. Crystals in fomblin were spread across a planar PMMA substrate for a serial crystallography collection. Crystals were identified by collecting single diffraction images at 1296 locations on the substrate. Small rotations were carried out on 443 identified crystals. Out of 443 crystals, 179 were then merged into a single dataset. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.33909 (2) | 0.86037 (15) | 0.84984 (6) | 0.03161 (15) | |
| N2 | 0.39783 (6) | 0.4660 (5) | 0.48613 (17) | 0.0230 (4) | |
| N3 | 0.49412 (7) | 0.3741 (5) | 0.68919 (17) | 0.0262 (4) | |
| N1 | 0.28938 (7) | 0.7435 (5) | 0.37399 (18) | 0.0290 (4) | |
| C10 | 0.42193 (8) | 0.4640 (5) | 0.59279 (19) | 0.0227 (4) | |
| C9 | 0.40510 (8) | 0.5835 (6) | 0.70782 (19) | 0.0239 (4) | |
| H9 | 0.422538 | 0.580704 | 0.780350 | 0.029* | |
| C11 | 0.46889 (7) | 0.3327 (5) | 0.58514 (19) | 0.0221 (4) | |
| C8 | 0.36147 (8) | 0.7061 (6) | 0.7093 (2) | 0.0247 (4) | |
| C7 | 0.33592 (8) | 0.7119 (6) | 0.6018 (2) | 0.0245 (4) | |
| H7 | 0.306638 | 0.795346 | 0.602640 | 0.029* | |
| C6 | 0.35564 (7) | 0.5872 (5) | 0.49082 (19) | 0.0227 (4) | |
| C12 | 0.48529 (8) | 0.1772 (6) | 0.4764 (2) | 0.0261 (5) | |
| H12 | 0.466958 | 0.151054 | 0.406258 | 0.031* | |
| C3 | 0.32392 (9) | 0.4757 (7) | 0.1501 (2) | 0.0309 (5) | |
| H3 | 0.335398 | 0.385218 | 0.075539 | 0.037* | |
| C5 | 0.33010 (7) | 0.5937 (6) | 0.37038 (19) | 0.0237 (5) | |
| C4 | 0.34844 (8) | 0.4527 (6) | 0.2611 (2) | 0.0263 (5) | |
| H4 | 0.376425 | 0.345636 | 0.262332 | 0.032* | |
| C15 | 0.53658 (8) | 0.2683 (7) | 0.6844 (2) | 0.0286 (5) | |
| H15 | 0.554369 | 0.300368 | 0.755327 | 0.034* | |
| C1 | 0.26644 (9) | 0.7613 (7) | 0.2659 (2) | 0.0323 (5) | |
| H1 | 0.238205 | 0.864407 | 0.267111 | 0.039* | |
| C13 | 0.52932 (9) | 0.0615 (6) | 0.4738 (2) | 0.0282 (5) | |
| H13 | 0.540792 | −0.048104 | 0.402665 | 0.034* | |
| C2 | 0.28253 (9) | 0.6339 (6) | 0.1518 (2) | 0.0325 (5) | |
| H2 | 0.265681 | 0.655219 | 0.078579 | 0.039* | |
| C14 | 0.55595 (9) | 0.1120 (6) | 0.5791 (2) | 0.0296 (5) | |
| H14 | 0.585879 | 0.043574 | 0.579555 | 0.036* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0374 (3) | 0.0352 (3) | 0.0223 (2) | 0.0043 (2) | 0.0051 (2) | −0.0040 (2) |
| N2 | 0.0259 (9) | 0.0225 (8) | 0.0207 (8) | −0.0011 (7) | 0.0006 (7) | 0.0010 (7) |
| N3 | 0.0280 (10) | 0.0278 (10) | 0.0228 (9) | −0.0031 (8) | −0.0005 (7) | 0.0015 (7) |
| N1 | 0.0263 (9) | 0.0315 (10) | 0.0291 (11) | −0.0005 (7) | 0.0004 (7) | 0.0032 (8) |
| C10 | 0.0268 (11) | 0.0198 (9) | 0.0216 (9) | −0.0028 (8) | 0.0009 (8) | 0.0011 (8) |
| C9 | 0.0288 (12) | 0.0233 (10) | 0.0196 (9) | −0.0020 (8) | −0.0006 (8) | 0.0000 (8) |
| C11 | 0.0245 (11) | 0.0202 (9) | 0.0217 (9) | −0.0030 (7) | 0.0009 (8) | 0.0025 (8) |
| C8 | 0.0337 (12) | 0.0216 (10) | 0.0186 (9) | −0.0025 (9) | 0.0057 (8) | −0.0012 (8) |
| C7 | 0.0252 (11) | 0.0240 (10) | 0.0244 (10) | 0.0002 (8) | 0.0027 (8) | 0.0010 (8) |
| C6 | 0.0260 (11) | 0.0221 (10) | 0.0200 (9) | −0.0021 (8) | 0.0016 (8) | 0.0008 (8) |
| C12 | 0.0306 (12) | 0.0255 (11) | 0.0222 (10) | 0.0007 (8) | −0.0005 (8) | 0.0005 (8) |
| C3 | 0.0337 (13) | 0.0349 (12) | 0.0240 (11) | −0.0047 (10) | −0.0014 (9) | 0.0005 (10) |
| C5 | 0.0251 (11) | 0.0235 (10) | 0.0224 (12) | −0.0036 (7) | 0.0009 (7) | 0.0024 (8) |
| C4 | 0.0276 (11) | 0.0290 (11) | 0.0224 (10) | −0.0026 (9) | 0.0007 (8) | 0.0006 (9) |
| C15 | 0.0259 (12) | 0.0333 (11) | 0.0266 (11) | −0.0027 (9) | −0.0017 (9) | 0.0069 (9) |
| C1 | 0.0262 (13) | 0.0372 (13) | 0.0334 (11) | −0.0010 (9) | −0.0023 (9) | 0.0064 (10) |
| C13 | 0.0327 (12) | 0.0253 (10) | 0.0265 (11) | 0.0014 (9) | 0.0053 (8) | 0.0017 (8) |
| C2 | 0.0335 (13) | 0.0361 (12) | 0.0280 (12) | −0.0075 (10) | −0.0066 (10) | 0.0047 (9) |
| C14 | 0.0266 (11) | 0.0293 (11) | 0.0329 (11) | 0.0013 (9) | 0.0022 (9) | 0.0084 (9) |
| Cl1—C8 | 1.740 (2) | C12—H12 | 0.9300 |
| N2—C10 | 1.343 (3) | C12—C13 | 1.386 (3) |
| N2—C6 | 1.342 (3) | C3—H3 | 0.9300 |
| N3—C11 | 1.347 (3) | C3—C4 | 1.391 (3) |
| N3—C15 | 1.330 (3) | C3—C2 | 1.375 (4) |
| N1—C5 | 1.343 (3) | C5—C4 | 1.393 (3) |
| N1—C1 | 1.339 (3) | C4—H4 | 0.9300 |
| C10—C9 | 1.399 (3) | C15—H15 | 0.9300 |
| C10—C11 | 1.490 (3) | C15—C14 | 1.395 (3) |
| C9—H9 | 0.9300 | C1—H1 | 0.9300 |
| C9—C8 | 1.383 (3) | C1—C2 | 1.393 (4) |
| C11—C12 | 1.390 (3) | C13—H13 | 0.9300 |
| C8—C7 | 1.373 (3) | C13—C14 | 1.386 (3) |
| C7—H7 | 0.9300 | C2—H2 | 0.9300 |
| C7—C6 | 1.402 (3) | C14—H14 | 0.9300 |
| C6—C5 | 1.490 (3) | ||
| C6—N2—C10 | 118.19 (18) | C4—C3—H3 | 120.4 |
| C15—N3—C11 | 117.66 (19) | C2—C3—H3 | 120.4 |
| C1—N1—C5 | 117.3 (2) | C2—C3—C4 | 119.2 (2) |
| N2—C10—C9 | 123.0 (2) | N1—C5—C6 | 116.39 (19) |
| N2—C10—C11 | 117.31 (18) | N1—C5—C4 | 123.0 (2) |
| C9—C10—C11 | 119.69 (19) | C4—C5—C6 | 120.6 (2) |
| C10—C9—H9 | 121.4 | C3—C4—C5 | 118.5 (2) |
| C8—C9—C10 | 117.3 (2) | C3—C4—H4 | 120.8 |
| C8—C9—H9 | 121.4 | C5—C4—H4 | 120.8 |
| N3—C11—C10 | 116.11 (19) | N3—C15—H15 | 118.1 |
| N3—C11—C12 | 122.5 (2) | N3—C15—C14 | 123.8 (2) |
| C12—C11—C10 | 121.39 (19) | C14—C15—H15 | 118.1 |
| C9—C8—Cl1 | 119.04 (17) | N1—C1—H1 | 118.2 |
| C7—C8—Cl1 | 119.76 (18) | N1—C1—C2 | 123.6 (2) |
| C7—C8—C9 | 121.2 (2) | C2—C1—H1 | 118.2 |
| C8—C7—H7 | 121.2 | C12—C13—H13 | 120.6 |
| C8—C7—C6 | 117.5 (2) | C12—C13—C14 | 118.8 (2) |
| C6—C7—H7 | 121.2 | C14—C13—H13 | 120.6 |
| N2—C6—C7 | 122.8 (2) | C3—C2—C1 | 118.4 (2) |
| N2—C6—C5 | 116.94 (18) | C3—C2—H2 | 120.8 |
| C7—C6—C5 | 120.22 (19) | C1—C2—H2 | 120.8 |
| C11—C12—H12 | 120.4 | C15—C14—H14 | 120.9 |
| C13—C12—C11 | 119.2 (2) | C13—C14—C15 | 118.1 (2) |
| C13—C12—H12 | 120.4 | C13—C14—H14 | 120.9 |
| Cl1—C8—C7—C6 | 179.50 (16) | C11—N3—C15—C14 | −1.3 (3) |
| N2—C10—C9—C8 | 0.4 (3) | C11—C10—C9—C8 | 179.31 (19) |
| N2—C10—C11—N3 | 171.92 (18) | C11—C12—C13—C14 | −1.4 (3) |
| N2—C10—C11—C12 | −8.1 (3) | C8—C7—C6—N2 | −0.2 (3) |
| N2—C6—C5—N1 | −174.36 (19) | C8—C7—C6—C5 | −178.61 (18) |
| N2—C6—C5—C4 | 5.1 (3) | C7—C6—C5—N1 | 4.1 (3) |
| N3—C11—C12—C13 | −0.4 (3) | C7—C6—C5—C4 | −176.4 (2) |
| N3—C15—C14—C13 | −0.5 (4) | C6—N2—C10—C9 | −0.3 (3) |
| N1—C5—C4—C3 | 1.6 (3) | C6—N2—C10—C11 | −179.24 (18) |
| N1—C1—C2—C3 | 1.1 (4) | C6—C5—C4—C3 | −177.8 (2) |
| C10—N2—C6—C7 | 0.2 (3) | C12—C13—C14—C15 | 1.9 (3) |
| C10—N2—C6—C5 | 178.62 (17) | C5—N1—C1—C2 | 0.0 (4) |
| C10—C9—C8—Cl1 | −179.57 (16) | C4—C3—C2—C1 | −0.9 (4) |
| C10—C9—C8—C7 | −0.4 (3) | C15—N3—C11—C10 | −178.21 (19) |
| C10—C11—C12—C13 | 179.6 (2) | C15—N3—C11—C12 | 1.8 (3) |
| C9—C10—C11—N3 | −7.1 (3) | C1—N1—C5—C6 | 178.08 (19) |
| C9—C10—C11—C12 | 172.93 (19) | C1—N1—C5—C4 | −1.4 (3) |
| C9—C8—C7—C6 | 0.3 (3) | C2—C3—C4—C5 | −0.4 (3) |
Acknowledgements
The authors thank Conor Rowley for preparing sample 3 during their time with Professor Cameron Kepert at the University of Sydney. We would like to sincerely thank all contributors to the OpenCV project for making this work possible. The authors would also like to thank Fillipe Goulart for giving us permission to use Python-TSP. We acknowledge Diamond Light Source for time on i19 under proposals cy40212-1 and cy40212-2. LEH acknowledges support from the Royal Society. SGL acknowledges PhD studentship (STU0441) support from Cardiff University, Diamond Light Source and the UK Hub for the Physical Sciences on XFELS.
Conflict of interest
The authors declare no conflicts of interest.
Data availability
Data are available in the supporting information associated with this article, as well as from the CCDC. A GitHub repository containing the data and the image-processing software can also be found at https://github.com/DiamondLightSource/i19-PhotometrySerialCrystallography.
Funding information
Funding for this research was provided by: Royal Society (award No. URF\R1\191104 and URF\R\251017 to L. Hatcher).
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