organic compounds
1-(4-Methoxyphenyl)imidazolidine-2,4-dione
aSchool of Pharmacy, Tianjin Medical University, Tianjin 300070, People's Republic of China
*Correspondence e-mail: wangrunling2008@yahoo.cn
In the title compound, C10H10N2O3, the dihedral angle between the benzene and imidazolidine rings is 6.0 (4)°, consistent with an essentially planar molecule. In the crystal, intermolecular N—H⋯O hydrogen bonding between centrosymmetrically related molecules leads to loosely associated dimeric aggregates. These are connected into a three-dimensional network by C—H⋯O interactions, as well as π–π interactions [centroid–centroid distances = 3.705 (3) and 3.622 (3) Å] between the imidazolidine and benzene rings.
Related literature
For related structures, see: Gerdil (1960). For the synthesis, see: Niwata et al. (1997); Kurzer et al. (1963).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810016478/tk2669sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810016478/tk2669Isup2.hkl
Compound (I) (1.13 g, 55% yield) was prepared according to the reported procedure of (Niwata et al., 1997), using 1-(4-methoxyphenyl)urea (0.010 mol; Kurzer et al., 1963), sodium hydride (0.022 mol), N,N-dimethylformamide (20 ml), and ethyl chloroacetate (0.0120 mol. Colourless single crystals suitable for X-ray
were obtained by recrystallization from a mixture of methanol and water (1:1 V/V).All C-bound H atoms were found on difference maps, but included in the final cycles of
using a riding model with C—H = 0.95–0.99 Å, and with Uiso(H) = 1.2Ueq(C) for aryl- and methylene-H atoms, and 1.5Ueq(C) for the methyl H atoms. The N–H1 atom was refined freely.During an investigation of new anti-diabetic drugs, we found that imidazolidinediones (IZD's) have good anti-diabetic activities. The
determination of the title compound, (I), was undertaken to investigate the relationship between structure and anti-diabetic activity.In title compound, C10H10N2O3, bond lengths and angles are normal and in a good agreement with those reported previously (Gerdil, 1960). The dihedral angle between the benzene ring (C4—C9) and imidazolidine ring (C1—C3/N1/N2) is 6.0 (4) °. In the crystal packing, intermolecular N—H···O hydrogen bonding between centrosymmetrically related molecules lead to loosely associated dimeric aggregates, Table 1. These aggregates are connected into the 3-D π–π interactions, the latter occurring between the imidazolidine and benzene rings, Table 1.
by C—H···O andFor related structures, see: Gerdil (1960). For the synthesis, see: Niwata et al. (1997); Kurzer et al. (1963).
Data collection: CrystalClear (Rigaku/MSC, 2005); cell
CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the title compound showing atom labelling, with displacement ellipsoids drawn at the 40% probability level. |
C10H10N2O3 | F(000) = 432 |
Mr = 206.20 | Dx = 1.484 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 196 reflections |
a = 4.9993 (10) Å | θ = 2.0–27.9° |
b = 6.1566 (12) Å | µ = 0.11 mm−1 |
c = 30.052 (6) Å | T = 113 K |
β = 93.91 (3)° | Prism, colourless |
V = 922.8 (3) Å3 | 0.24 × 0.12 × 0.10 mm |
Z = 4 |
Rigaku Saturn CCD area-detector diffractometer | 2203 independent reflections |
Radiation source: rotating anode | 1507 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.078 |
Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 2.7° |
ω and φ scans | h = −6→4 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | k = −8→7 |
Tmin = 0.974, Tmax = 0.989 | l = −34→39 |
6955 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.064 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.151 | w = 1/[σ2(Fo2) + (0.0718P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
2203 reflections | Δρmax = 0.44 e Å−3 |
142 parameters | Δρmin = −0.40 e Å−3 |
1 restraint | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 1.95 (8) |
C10H10N2O3 | V = 922.8 (3) Å3 |
Mr = 206.20 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.9993 (10) Å | µ = 0.11 mm−1 |
b = 6.1566 (12) Å | T = 113 K |
c = 30.052 (6) Å | 0.24 × 0.12 × 0.10 mm |
β = 93.91 (3)° |
Rigaku Saturn CCD area-detector diffractometer | 2203 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | 1507 reflections with I > 2σ(I) |
Tmin = 0.974, Tmax = 0.989 | Rint = 0.078 |
6955 measured reflections |
R[F2 > 2σ(F2)] = 0.064 | 1 restraint |
wR(F2) = 0.151 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.44 e Å−3 |
2203 reflections | Δρmin = −0.40 e Å−3 |
142 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.1590 (2) | 0.2744 (2) | 0.50596 (4) | 0.0270 (4) | |
O2 | 0.4023 (2) | −0.2177 (2) | 0.40235 (4) | 0.0286 (4) | |
O3 | 1.2460 (3) | 0.2947 (2) | 0.28363 (4) | 0.0303 (4) | |
N1 | 0.2393 (3) | −0.0069 (2) | 0.45821 (5) | 0.0232 (4) | |
N2 | 0.5536 (3) | 0.1341 (2) | 0.41800 (5) | 0.0217 (4) | |
C1 | 0.2749 (3) | 0.1953 (3) | 0.47530 (6) | 0.0221 (4) | |
C2 | 0.4866 (3) | 0.3027 (3) | 0.44955 (5) | 0.0213 (4) | |
H2A | 0.4155 | 0.4340 | 0.4338 | 0.026* | |
H2B | 0.6448 | 0.3433 | 0.4694 | 0.026* | |
C3 | 0.4027 (3) | −0.0471 (3) | 0.42284 (6) | 0.0221 (4) | |
C4 | 0.7341 (3) | 0.1737 (3) | 0.38439 (5) | 0.0209 (4) | |
C5 | 0.7790 (3) | 0.0195 (3) | 0.35134 (6) | 0.0265 (4) | |
H5 | 0.6900 | −0.1168 | 0.3514 | 0.032* | |
C6 | 0.9526 (3) | 0.0659 (3) | 0.31876 (6) | 0.0272 (5) | |
H6 | 0.9814 | −0.0391 | 0.2964 | 0.033* | |
C7 | 1.0854 (3) | 0.2637 (3) | 0.31826 (6) | 0.0236 (4) | |
C8 | 1.0464 (3) | 0.4155 (3) | 0.35116 (6) | 0.0244 (4) | |
H8 | 1.1385 | 0.5505 | 0.3513 | 0.029* | |
C9 | 0.8710 (3) | 0.3692 (3) | 0.38415 (6) | 0.0230 (4) | |
H9 | 0.8452 | 0.4735 | 0.4068 | 0.028* | |
C10 | 1.3963 (4) | 0.4914 (3) | 0.28380 (7) | 0.0339 (5) | |
H10A | 1.2732 | 0.6153 | 0.2811 | 0.051* | |
H10B | 1.5108 | 0.4915 | 0.2586 | 0.051* | |
H10C | 1.5082 | 0.5027 | 0.3118 | 0.051* | |
H1 | 0.113 (3) | −0.100 (3) | 0.4673 (7) | 0.045 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0294 (7) | 0.0210 (8) | 0.0312 (7) | −0.0022 (5) | 0.0070 (5) | −0.0019 (6) |
O2 | 0.0365 (7) | 0.0170 (8) | 0.0321 (7) | −0.0036 (5) | 0.0020 (5) | −0.0035 (5) |
O3 | 0.0331 (7) | 0.0295 (9) | 0.0295 (7) | −0.0001 (5) | 0.0103 (5) | −0.0008 (6) |
N1 | 0.0260 (7) | 0.0171 (9) | 0.0264 (8) | −0.0035 (5) | 0.0012 (6) | 0.0003 (6) |
N2 | 0.0269 (8) | 0.0151 (8) | 0.0232 (8) | −0.0022 (5) | 0.0035 (6) | −0.0020 (6) |
C1 | 0.0243 (8) | 0.0183 (10) | 0.0231 (8) | −0.0002 (6) | −0.0027 (6) | 0.0020 (7) |
C2 | 0.0263 (8) | 0.0152 (9) | 0.0226 (9) | −0.0019 (6) | 0.0031 (6) | −0.0019 (7) |
C3 | 0.0253 (8) | 0.0171 (10) | 0.0235 (9) | −0.0010 (6) | −0.0022 (6) | 0.0001 (7) |
C4 | 0.0226 (8) | 0.0184 (10) | 0.0212 (8) | 0.0021 (6) | −0.0006 (6) | 0.0015 (7) |
C5 | 0.0320 (9) | 0.0181 (10) | 0.0295 (10) | −0.0007 (7) | 0.0022 (7) | −0.0018 (7) |
C6 | 0.0339 (10) | 0.0229 (10) | 0.0249 (9) | 0.0025 (7) | 0.0026 (7) | −0.0038 (8) |
C7 | 0.0219 (9) | 0.0259 (11) | 0.0229 (9) | 0.0041 (6) | 0.0011 (6) | 0.0022 (7) |
C8 | 0.0256 (9) | 0.0216 (10) | 0.0259 (9) | −0.0029 (6) | −0.0004 (7) | 0.0004 (7) |
C9 | 0.0267 (9) | 0.0193 (10) | 0.0226 (8) | −0.0008 (6) | −0.0001 (6) | −0.0020 (7) |
C10 | 0.0310 (10) | 0.0359 (13) | 0.0353 (11) | −0.0048 (8) | 0.0067 (8) | 0.0036 (9) |
O1—C1 | 1.223 (2) | C4—C9 | 1.385 (2) |
O2—C3 | 1.217 (2) | C4—C5 | 1.403 (2) |
O3—C7 | 1.370 (2) | C5—C6 | 1.382 (2) |
O3—C10 | 1.425 (2) | C5—H5 | 0.9500 |
N1—C1 | 1.354 (2) | C6—C7 | 1.388 (3) |
N1—C3 | 1.406 (2) | C6—H6 | 0.9500 |
N1—H1 | 0.911 (10) | C7—C8 | 1.384 (2) |
N2—C3 | 1.360 (2) | C8—C9 | 1.397 (2) |
N2—C4 | 1.420 (2) | C8—H8 | 0.9500 |
N2—C2 | 1.460 (2) | C9—H9 | 0.9500 |
C1—C2 | 1.506 (2) | C10—H10A | 0.9800 |
C2—H2A | 0.9900 | C10—H10B | 0.9800 |
C2—H2B | 0.9900 | C10—H10C | 0.9800 |
C7—O3—C10 | 116.85 (14) | C6—C5—C4 | 120.02 (17) |
C1—N1—C3 | 112.37 (14) | C6—C5—H5 | 120.0 |
C1—N1—H1 | 122.9 (15) | C4—C5—H5 | 120.0 |
C3—N1—H1 | 124.5 (15) | C5—C6—C7 | 120.87 (17) |
C3—N2—C4 | 126.92 (15) | C5—C6—H6 | 119.6 |
C3—N2—C2 | 111.09 (14) | C7—C6—H6 | 119.6 |
C4—N2—C2 | 121.66 (14) | O3—C7—C8 | 124.53 (17) |
O1—C1—N1 | 126.52 (17) | O3—C7—C6 | 115.84 (16) |
O1—C1—C2 | 126.75 (17) | C8—C7—C6 | 119.62 (16) |
N1—C1—C2 | 106.72 (15) | C7—C8—C9 | 119.67 (17) |
N2—C2—C1 | 102.84 (14) | C7—C8—H8 | 120.2 |
N2—C2—H2A | 111.2 | C9—C8—H8 | 120.2 |
C1—C2—H2A | 111.2 | C4—C9—C8 | 121.02 (16) |
N2—C2—H2B | 111.2 | C4—C9—H9 | 119.5 |
C1—C2—H2B | 111.2 | C8—C9—H9 | 119.5 |
H2A—C2—H2B | 109.1 | O3—C10—H10A | 109.5 |
O2—C3—N2 | 129.43 (17) | O3—C10—H10B | 109.5 |
O2—C3—N1 | 123.60 (16) | H10A—C10—H10B | 109.5 |
N2—C3—N1 | 106.95 (14) | O3—C10—H10C | 109.5 |
C9—C4—C5 | 118.78 (16) | H10A—C10—H10C | 109.5 |
C9—C4—N2 | 119.40 (15) | H10B—C10—H10C | 109.5 |
C5—C4—N2 | 121.82 (16) | ||
C3—N1—C1—O1 | 179.61 (16) | C3—N2—C4—C5 | −0.8 (3) |
C3—N1—C1—C2 | −0.94 (18) | C2—N2—C4—C5 | −173.66 (15) |
C3—N2—C2—C1 | 1.19 (18) | C9—C4—C5—C6 | −1.4 (2) |
C4—N2—C2—C1 | 175.05 (14) | N2—C4—C5—C6 | 178.85 (15) |
O1—C1—C2—N2 | 179.32 (16) | C4—C5—C6—C7 | 0.3 (3) |
N1—C1—C2—N2 | −0.13 (17) | C10—O3—C7—C8 | 4.6 (2) |
C4—N2—C3—O2 | 6.1 (3) | C10—O3—C7—C6 | −176.52 (15) |
C2—N2—C3—O2 | 179.53 (17) | C5—C6—C7—O3 | −178.02 (15) |
C4—N2—C3—N1 | −175.22 (14) | C5—C6—C7—C8 | 0.9 (3) |
C2—N2—C3—N1 | −1.77 (19) | O3—C7—C8—C9 | 177.92 (14) |
C1—N1—C3—O2 | −179.49 (15) | C6—C7—C8—C9 | −0.9 (2) |
C1—N1—C3—N2 | 1.71 (19) | C5—C4—C9—C8 | 1.4 (3) |
C3—N2—C4—C9 | 179.43 (16) | N2—C4—C9—C8 | −178.85 (14) |
C2—N2—C4—C9 | 6.6 (2) | C7—C8—C9—C4 | −0.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.91 (1) | 1.95 (1) | 2.8512 (19) | 172 (2) |
C2—H2A···O2ii | 0.99 | 2.34 | 3.291 (2) | 160 |
C8—H8···O2iii | 0.95 | 2.42 | 3.203 (2) | 140 |
Cg1···Cg1iv | 3.705 (3) | |||
Cg1···Cg2v | 3.622 (3) |
Symmetry codes: (i) −x, −y, −z+1; (ii) x, y+1, z; (iii) x+1, y+1, z; (iv) −x+1, −y, −z; (v) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C10H10N2O3 |
Mr | 206.20 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 113 |
a, b, c (Å) | 4.9993 (10), 6.1566 (12), 30.052 (6) |
β (°) | 93.91 (3) |
V (Å3) | 922.8 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.24 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2005) |
Tmin, Tmax | 0.974, 0.989 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6955, 2203, 1507 |
Rint | 0.078 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.151, 1.05 |
No. of reflections | 2203 |
No. of parameters | 142 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.40 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.911 (10) | 1.946 (10) | 2.8512 (19) | 172 (2) |
C2—H2A···O2ii | 0.99 | 2.34 | 3.291 (2) | 160 |
C8—H8···O2iii | 0.95 | 2.42 | 3.203 (2) | 140 |
Cg1···Cg1iv | . | . | 3.705 (3) | . |
Cg1···Cg2v | . | . | 3.622 (3) | . |
Symmetry codes: (i) −x, −y, −z+1; (ii) x, y+1, z; (iii) x+1, y+1, z; (iv) −x+1, −y, −z; (v) x+1, y, z. |
Acknowledgements
This project was supported by the National Natural Science Foundation of China under contract No. 20972112 and the Tianjin Key Program of Natural Science Foundation of China under contract No. 09JCZDJC21600.
References
Gerdil, R. (1960). Acta Cryst. 13, 165–166. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Kurzer, F., Arnold, R. T. & Krogh, L. C. (1963). Org. Synth. 4, 49. Google Scholar
Niwata, S., Fukami, H., Sumida, M., Ito, A., Kakutani, S., Saitoh, M., Suzuki, K., Imoto, M., Shibata, H., Imajo, S., Kiso, Y., Tanaka, T., Nakazato, H., Ishihara, T., Takai, S., Yamamoto, D., Shiota, N., Miyazaki, M., Okunishi, H., Kinoshita, A., Urata, H. & Arakawa, K. (1997). J. Med. Chem. 40, 2156–2163. CrossRef CAS PubMed Web of Science Google Scholar
Rigaku/MSC (2005). CrystalClear. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
During an investigation of new anti-diabetic drugs, we found that imidazolidinediones (IZD's) have good anti-diabetic activities. The crystal structure determination of the title compound, (I), was undertaken to investigate the relationship between structure and anti-diabetic activity.
In title compound, C10H10N2O3, bond lengths and angles are normal and in a good agreement with those reported previously (Gerdil, 1960). The dihedral angle between the benzene ring (C4—C9) and imidazolidine ring (C1—C3/N1/N2) is 6.0 (4) °. In the crystal packing, intermolecular N—H···O hydrogen bonding between centrosymmetrically related molecules lead to loosely associated dimeric aggregates, Table 1. These aggregates are connected into the 3-D crystal structure by C—H···O and π–π interactions, the latter occurring between the imidazolidine and benzene rings, Table 1.