supplementary materials

(E)-1-(2-Hydroxy-4,6-dimethoxyphenyl)-3-(4-methoxyphenyl)prop-2-en-1-one from Kaempferia rotunda Val.
The planar -CH=CHC(=O)- fragment (r.m.s. deviation = 0.074 Å) in the title compound, C18H18O5, connects the planar hydroxydimethoxyphenyl (r.m.s. deviation = 0.039 Å) and methoxylphenyl (r.m.s. deviation = 0.021 Å) parts. The central fragment forms a dihedral angle of 13.7 (1)° with the hydroxydimethoxyphenyl part and 32.0 (1)° with the methoxyphenyl part. The hydroxy group forms an intramolecular hydrogen bond to the carbonyl O atom.
Kaempferia rotunda rhizomes were purchased from a market in Kempas,
Johor. The rhizomes were dried and then grounded. The grounded rhizomes were
extracted with n-hexane (4.5 L), ethyl acetate (4.5 L)
and methanol (4.5 L) in a soxhlet extractor for 16 h. The extracts were
concentrated to give a dark brown semi-solid from the n-hexane extract
(2.32 g), a dark brown oil from the ethyl acetate extract (6.80 g) and a dark
brown viscous liquid from the methanol extract (15.27 g). The n-hexane
extract was purified by column chromatography (93.0 g, column size: 4.5
× 45.0 cm) with n-hexane:ether (99:1, 98:2 and 97:3) as eluents
to give 20 fractions. Fractions 13 (0.08 g) and 14 (0.02 g) were combined and
recrystallized by from an n-hexane: ether mixture to afford the title
compound (6.9 mg) as yellow crystals.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95–0.98 Å)
and were included in the refinement in the riding model approximation, with
U(H) set to 1.2–15U(C).
The hydroxy H-atom was located in a difference Fourier map, and was refined
isotropically with the O–H distance restrained to 0.84±0.01 Å.
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
(
E)-1-(2-Hydroxy-4,6-dimethoxyphenyl)-3-(4-methoxyphenyl)prop-2-en-1-one
top
Crystal data top
| C18H18O5 | F(000) = 664 |
| Mr = 314.32 | Dx = 1.389 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 5893 reflections |
| a = 12.8502 (8) Å | θ = 2.3–28.2° |
| b = 8.3226 (5) Å | µ = 0.10 mm−1 |
| c = 14.1865 (9) Å | T = 100 K |
| β = 97.765 (1)° | Irregular block, yellow |
| V = 1503.29 (16) Å3 | 0.45 × 0.40 × 0.05 mm |
| Z = 4 | |
Data collection top
Bruker SMART APEX diffractometer | 2989 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.027 |
| graphite | θmax = 27.5°, θmin = 2.0° |
| ω scans | h = −16→15 |
| 13992 measured reflections | k = −10→10 |
| 3464 independent reflections | l = −18→18 |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.0545P)2 + 0.5468P] where P = (Fo2 + 2Fc2)/3 |
| 3464 reflections | (Δ/σ)max = 0.001 |
| 215 parameters | Δρmax = 0.32 e Å−3 |
| 1 restraint | Δρmin = −0.23 e Å−3 |
Crystal data top
| C18H18O5 | V = 1503.29 (16) Å3 |
| Mr = 314.32 | Z = 4 |
| Monoclinic, P21/n | Mo Kα radiation |
| a = 12.8502 (8) Å | µ = 0.10 mm−1 |
| b = 8.3226 (5) Å | T = 100 K |
| c = 14.1865 (9) Å | 0.45 × 0.40 × 0.05 mm |
| β = 97.765 (1)° | |
Data collection top
Bruker SMART APEX diffractometer | 2989 reflections with I > 2σ(I) |
| 13992 measured reflections | Rint = 0.027 |
| 3464 independent reflections | θmax = 27.5° |
Refinement top
| R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.101 | Δρmax = 0.32 e Å−3 |
| S = 1.01 | Δρmin = −0.23 e Å−3 |
| 3464 reflections | Absolute structure: ? |
| 215 parameters | Flack parameter: ? |
| 1 restraint | Rogers parameter: ? |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| O1 | 0.71889 (6) | 0.58291 (10) | 0.67517 (6) | 0.02051 (19) | |
| H1 | 0.7343 (14) | 0.536 (2) | 0.6242 (9) | 0.049 (5)* | |
| O2 | 0.44911 (7) | 0.93407 (10) | 0.74558 (6) | 0.0224 (2) | |
| O3 | 0.45229 (6) | 0.75473 (10) | 0.42926 (5) | 0.01955 (19) | |
| O4 | 0.72544 (6) | 0.50207 (10) | 0.50890 (6) | 0.02089 (19) | |
| O5 | 0.61863 (7) | 0.54719 (10) | −0.08390 (5) | 0.01985 (19) | |
| C1 | 0.63266 (9) | 0.66965 (13) | 0.64416 (8) | 0.0166 (2) | |
| C2 | 0.58866 (9) | 0.75693 (13) | 0.71251 (8) | 0.0181 (2) | |
| H2 | 0.6199 | 0.7560 | 0.7771 | 0.022* | |
| C3 | 0.49855 (9) | 0.84502 (13) | 0.68446 (8) | 0.0176 (2) | |
| C4 | 0.45027 (9) | 0.84618 (14) | 0.58972 (8) | 0.0177 (2) | |
| H4 | 0.3869 | 0.9041 | 0.5724 | 0.021* | |
| C5 | 0.49567 (9) | 0.76227 (13) | 0.52174 (8) | 0.0163 (2) | |
| C6 | 0.59130 (8) | 0.67424 (13) | 0.54579 (7) | 0.0160 (2) | |
| C7 | 0.49545 (11) | 0.93606 (16) | 0.84345 (8) | 0.0257 (3) | |
| H7A | 0.4487 | 0.9924 | 0.8815 | 0.039* | |
| H7B | 0.5632 | 0.9917 | 0.8491 | 0.039* | |
| H7C | 0.5061 | 0.8255 | 0.8665 | 0.039* | |
| C8 | 0.35464 (9) | 0.83628 (15) | 0.40224 (8) | 0.0210 (2) | |
| H8A | 0.3332 | 0.8236 | 0.3337 | 0.032* | |
| H8B | 0.3632 | 0.9507 | 0.4176 | 0.032* | |
| H8C | 0.3008 | 0.7903 | 0.4370 | 0.032* | |
| C9 | 0.64968 (9) | 0.59271 (13) | 0.47819 (8) | 0.0170 (2) | |
| C10 | 0.62915 (9) | 0.61886 (14) | 0.37466 (8) | 0.0180 (2) | |
| H10 | 0.5914 | 0.7110 | 0.3497 | 0.022* | |
| C11 | 0.66420 (9) | 0.51130 (14) | 0.31598 (8) | 0.0179 (2) | |
| H11 | 0.6976 | 0.4182 | 0.3446 | 0.022* | |
| C12 | 0.65630 (8) | 0.52262 (14) | 0.21240 (8) | 0.0170 (2) | |
| C13 | 0.67036 (9) | 0.38511 (14) | 0.15961 (8) | 0.0194 (2) | |
| H13 | 0.6880 | 0.2870 | 0.1922 | 0.023* | |
| C14 | 0.65939 (9) | 0.38694 (14) | 0.06058 (8) | 0.0191 (2) | |
| H14 | 0.6686 | 0.2912 | 0.0262 | 0.023* | |
| C15 | 0.63480 (8) | 0.53098 (14) | 0.01267 (8) | 0.0166 (2) | |
| C16 | 0.62576 (9) | 0.67210 (14) | 0.06464 (8) | 0.0192 (2) | |
| H16 | 0.6127 | 0.7714 | 0.0322 | 0.023* | |
| C17 | 0.63562 (9) | 0.66808 (14) | 0.16271 (8) | 0.0183 (2) | |
| H17 | 0.6284 | 0.7645 | 0.1971 | 0.022* | |
| C18 | 0.63148 (10) | 0.40641 (15) | −0.13935 (8) | 0.0219 (2) | |
| H18A | 0.6141 | 0.4319 | −0.2071 | 0.033* | |
| H18B | 0.5847 | 0.3215 | −0.1222 | 0.033* | |
| H18C | 0.7045 | 0.3696 | −0.1267 | 0.033* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| O1 | 0.0192 (4) | 0.0242 (4) | 0.0175 (4) | 0.0058 (3) | 0.0000 (3) | 0.0029 (3) |
| O2 | 0.0276 (5) | 0.0221 (4) | 0.0174 (4) | 0.0066 (3) | 0.0027 (3) | −0.0003 (3) |
| O3 | 0.0168 (4) | 0.0253 (4) | 0.0156 (4) | 0.0041 (3) | −0.0011 (3) | 0.0016 (3) |
| O4 | 0.0204 (4) | 0.0229 (4) | 0.0191 (4) | 0.0052 (3) | 0.0017 (3) | 0.0024 (3) |
| O5 | 0.0246 (4) | 0.0197 (4) | 0.0156 (4) | 0.0016 (3) | 0.0042 (3) | 0.0000 (3) |
| C1 | 0.0150 (5) | 0.0154 (5) | 0.0188 (5) | −0.0015 (4) | 0.0007 (4) | 0.0041 (4) |
| C2 | 0.0200 (6) | 0.0183 (5) | 0.0152 (5) | −0.0012 (4) | −0.0001 (4) | 0.0025 (4) |
| C3 | 0.0200 (5) | 0.0147 (5) | 0.0185 (5) | −0.0016 (4) | 0.0044 (4) | 0.0006 (4) |
| C4 | 0.0166 (5) | 0.0172 (5) | 0.0191 (5) | 0.0017 (4) | 0.0018 (4) | 0.0037 (4) |
| C5 | 0.0168 (5) | 0.0159 (5) | 0.0156 (5) | −0.0025 (4) | 0.0002 (4) | 0.0032 (4) |
| C6 | 0.0160 (5) | 0.0157 (5) | 0.0160 (5) | −0.0013 (4) | 0.0016 (4) | 0.0023 (4) |
| C7 | 0.0348 (7) | 0.0229 (6) | 0.0188 (6) | 0.0044 (5) | 0.0013 (5) | −0.0027 (5) |
| C8 | 0.0170 (5) | 0.0242 (6) | 0.0207 (5) | 0.0033 (4) | −0.0019 (4) | 0.0034 (4) |
| C9 | 0.0161 (5) | 0.0156 (5) | 0.0189 (5) | −0.0026 (4) | 0.0013 (4) | 0.0021 (4) |
| C10 | 0.0162 (5) | 0.0194 (5) | 0.0184 (5) | 0.0002 (4) | 0.0023 (4) | 0.0038 (4) |
| C11 | 0.0173 (5) | 0.0180 (5) | 0.0181 (5) | −0.0008 (4) | 0.0011 (4) | 0.0031 (4) |
| C12 | 0.0142 (5) | 0.0198 (6) | 0.0171 (5) | 0.0005 (4) | 0.0022 (4) | 0.0012 (4) |
| C13 | 0.0199 (6) | 0.0167 (5) | 0.0211 (6) | 0.0025 (4) | 0.0011 (4) | 0.0030 (4) |
| C14 | 0.0187 (5) | 0.0179 (6) | 0.0206 (5) | 0.0021 (4) | 0.0024 (4) | −0.0014 (4) |
| C15 | 0.0131 (5) | 0.0210 (6) | 0.0160 (5) | −0.0005 (4) | 0.0030 (4) | 0.0003 (4) |
| C16 | 0.0207 (6) | 0.0167 (5) | 0.0205 (5) | 0.0021 (4) | 0.0039 (4) | 0.0027 (4) |
| C17 | 0.0191 (5) | 0.0169 (6) | 0.0190 (5) | 0.0008 (4) | 0.0035 (4) | −0.0005 (4) |
| C18 | 0.0253 (6) | 0.0220 (6) | 0.0193 (5) | −0.0011 (5) | 0.0060 (4) | −0.0033 (4) |
Geometric parameters (Å, °) top
| O1—C1 | 1.3457 (13) | C8—H8A | 0.9800 |
| O1—H1 | 0.867 (9) | C8—H8B | 0.9800 |
| O2—C3 | 1.3615 (14) | C8—H8C | 0.9800 |
| O2—C7 | 1.4349 (14) | C9—C10 | 1.4728 (15) |
| O3—C5 | 1.3558 (13) | C10—C11 | 1.3411 (16) |
| O3—C8 | 1.4326 (13) | C10—H10 | 0.9500 |
| O4—C9 | 1.2618 (14) | C11—C12 | 1.4623 (15) |
| O5—C15 | 1.3644 (13) | C11—H11 | 0.9500 |
| O5—C18 | 1.4331 (14) | C12—C13 | 1.3927 (16) |
| C1—C2 | 1.3913 (16) | C12—C17 | 1.4079 (16) |
| C1—C6 | 1.4250 (15) | C13—C14 | 1.3929 (16) |
| C2—C3 | 1.3828 (16) | C13—H13 | 0.9500 |
| C2—H2 | 0.9500 | C14—C15 | 1.3932 (16) |
| C3—C4 | 1.4023 (15) | C14—H14 | 0.9500 |
| C4—C5 | 1.3820 (16) | C15—C16 | 1.3999 (16) |
| C4—H4 | 0.9500 | C16—C17 | 1.3804 (16) |
| C5—C6 | 1.4318 (15) | C16—H16 | 0.9500 |
| C6—C9 | 1.4619 (15) | C17—H17 | 0.9500 |
| C7—H7A | 0.9800 | C18—H18A | 0.9800 |
| C7—H7B | 0.9800 | C18—H18B | 0.9800 |
| C7—H7C | 0.9800 | C18—H18C | 0.9800 |
| | | |
| C1—O1—H1 | 103.7 (12) | O4—C9—C6 | 119.43 (10) |
| C3—O2—C7 | 117.01 (9) | O4—C9—C10 | 117.29 (10) |
| C5—O3—C8 | 117.88 (9) | C6—C9—C10 | 123.16 (10) |
| C15—O5—C18 | 117.20 (9) | C11—C10—C9 | 119.37 (10) |
| O1—C1—C2 | 116.51 (10) | C11—C10—H10 | 120.3 |
| O1—C1—C6 | 121.08 (10) | C9—C10—H10 | 120.3 |
| C2—C1—C6 | 122.39 (10) | C10—C11—C12 | 126.67 (10) |
| C3—C2—C1 | 118.66 (10) | C10—C11—H11 | 116.7 |
| C3—C2—H2 | 120.7 | C12—C11—H11 | 116.7 |
| C1—C2—H2 | 120.7 | C13—C12—C17 | 117.82 (10) |
| O2—C3—C2 | 123.37 (10) | C13—C12—C11 | 119.40 (10) |
| O2—C3—C4 | 115.00 (10) | C17—C12—C11 | 122.77 (10) |
| C2—C3—C4 | 121.63 (10) | C12—C13—C14 | 122.04 (10) |
| C5—C4—C3 | 119.44 (10) | C12—C13—H13 | 119.0 |
| C5—C4—H4 | 120.3 | C14—C13—H13 | 119.0 |
| C3—C4—H4 | 120.3 | C15—C14—C13 | 119.13 (10) |
| O3—C5—C4 | 122.78 (10) | C15—C14—H14 | 120.4 |
| O3—C5—C6 | 115.74 (10) | C13—C14—H14 | 120.4 |
| C4—C5—C6 | 121.46 (10) | O5—C15—C14 | 124.66 (10) |
| C1—C6—C5 | 116.20 (10) | O5—C15—C16 | 115.70 (10) |
| C1—C6—C9 | 118.26 (10) | C14—C15—C16 | 119.64 (10) |
| C5—C6—C9 | 125.53 (10) | C17—C16—C15 | 120.50 (10) |
| O2—C7—H7A | 109.5 | C17—C16—H16 | 119.7 |
| O2—C7—H7B | 109.5 | C15—C16—H16 | 119.7 |
| H7A—C7—H7B | 109.5 | C16—C17—C12 | 120.72 (10) |
| O2—C7—H7C | 109.5 | C16—C17—H17 | 119.6 |
| H7A—C7—H7C | 109.5 | C12—C17—H17 | 119.6 |
| H7B—C7—H7C | 109.5 | O5—C18—H18A | 109.5 |
| O3—C8—H8A | 109.5 | O5—C18—H18B | 109.5 |
| O3—C8—H8B | 109.5 | H18A—C18—H18B | 109.5 |
| H8A—C8—H8B | 109.5 | O5—C18—H18C | 109.5 |
| O3—C8—H8C | 109.5 | H18A—C18—H18C | 109.5 |
| H8A—C8—H8C | 109.5 | H18B—C18—H18C | 109.5 |
| H8B—C8—H8C | 109.5 | | |
| | | |
| O1—C1—C2—C3 | −178.53 (10) | C5—C6—C9—O4 | −170.97 (10) |
| C6—C1—C2—C3 | 3.23 (17) | C1—C6—C9—C10 | −165.63 (10) |
| C7—O2—C3—C2 | 0.85 (16) | C5—C6—C9—C10 | 13.18 (17) |
| C7—O2—C3—C4 | 179.78 (10) | O4—C9—C10—C11 | 22.06 (16) |
| C1—C2—C3—O2 | 179.81 (10) | C6—C9—C10—C11 | −162.02 (11) |
| C1—C2—C3—C4 | 0.96 (17) | C9—C10—C11—C12 | −176.23 (10) |
| O2—C3—C4—C5 | 178.59 (10) | C10—C11—C12—C13 | −162.90 (11) |
| C2—C3—C4—C5 | −2.46 (17) | C10—C11—C12—C17 | 17.58 (18) |
| C8—O3—C5—C4 | −0.74 (16) | C17—C12—C13—C14 | −3.23 (17) |
| C8—O3—C5—C6 | 177.90 (10) | C11—C12—C13—C14 | 177.23 (10) |
| C3—C4—C5—O3 | 178.40 (10) | C12—C13—C14—C15 | 0.76 (18) |
| C3—C4—C5—C6 | −0.17 (17) | C18—O5—C15—C14 | −2.19 (16) |
| O1—C1—C6—C5 | 176.25 (10) | C18—O5—C15—C16 | 177.52 (10) |
| C2—C1—C6—C5 | −5.59 (16) | C13—C14—C15—O5 | −177.73 (10) |
| O1—C1—C6—C9 | −4.83 (16) | C13—C14—C15—C16 | 2.57 (17) |
| C2—C1—C6—C9 | 173.33 (10) | O5—C15—C16—C17 | 176.90 (10) |
| O3—C5—C6—C1 | −174.67 (9) | C14—C15—C16—C17 | −3.38 (17) |
| C4—C5—C6—C1 | 4.00 (16) | C15—C16—C17—C12 | 0.84 (17) |
| O3—C5—C6—C9 | 6.50 (16) | C13—C12—C17—C16 | 2.41 (17) |
| C4—C5—C6—C9 | −174.84 (11) | C11—C12—C17—C16 | −178.06 (11) |
| C1—C6—C9—O4 | 10.22 (16) | | |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···O4 | 0.87 (1) | 1.65 (1) | 2.465 (1) | 156 (2) |
Table 1
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···O4 | 0.87 (1) | 1.65 (1) | 2.465 (1) | 156 (2) |
We thank the University of Malaya for supporting this study.
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Sirat, H. M., Jamil, S. & Siew, L. W. (2001). ACGC Chem. Res. Commun. 13, 48–54.
Stevenson, P. C., Veitch, N. C. & Simmonds, M. S. J. (2007). Phytochemistry, 68, 1579–1586.
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Kaempferia rotunda is one of the four Malaysian Kaempferia of the Zingiberaceae family; among the constitutents isolated is 1-(2-hydroxy-4,6-dimethoxyphenyl)-3-(4-methoxyphenyl)-2-propen-1-one (Scheme I) (Sirat et al., 2001; Stevenson et al., 2007). The planar –CH═CHC(═O)– fragment (r.m.s. deviation 0.074 Å) connects the planar hydroxyldimethoxyphenyl (r.m.s. deviation 0.039 Å) and methoxylphenyl (r.m.s. deviation 0.021 Å) parts. The fragment is aligned at 13.7 (1) ° with the hydroxydimethoxyphenyl part and at 32.0 (1) ° with the methoxyphenyl part. The hydroxy group forms an intramolecular hydrogen bond to the carbonyl oxygen atom of the fragment (Fig. 1).