supplementary materials

(E)-2,2-Dimethyl-5-(3-phenylallylidene)-1,3-dioxane-4,6-dione
The title compound, C15H14O4, was prepared by the reaction of 2,2-dimethyl-1,3-dioxane-4,6-dione and (Z)-3-phenylacrylaldehyde in ethanol. The dioxane ring is in a sofa conformation with the C atom bonded to the two methyl groups forming the flap. With the exception of the flap atom and the methyl group C atoms, all other non-H atoms are essentially planar, with an r.m.s. deviation of 0.067 (1) Å. The crystal structure is stabilized by weak intermolecular C-H
O hydrogen bonds.
The mixture of malonic acid (6.24 g, 0.06 mol) and acetic anhydride(9 ml) in
strong sulfuric acid (0.25 ml) was stirred with water at 303K,
After dissolving, propan-2-one (3.48 g, 0.06 mol) was added dropwise into
solution for 1 h. The reaction was allowed to proceed for 2 h. The mixture
was cooled and filtered, and then an ethanol solution of
(Z)-3-phenylacrylaldehyde (7.92g,0.06 mol) was added. The solution was
then filtered and concentrated. Single crystals were obtained by
evaporation of an petroleum ether-ethylacetate
(4:1 v/v) solution of (I) at
room temperature over a period of several days.
The H atoms were placed in calculated positions (C—H = 0.93 and 0.96 Å),
and refined as riding with Uiso(H) = 1.2Ueq(C) or
1.5Ueq(methyl C).
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
(
E)-2,2-Dimethyl-5-(3-phenylallylidene)-1,3-dioxane-4,6-dione
top
Crystal data top
| C15H14O4 | Z = 2 |
| Mr = 258.26 | F(000) = 272 |
| Triclinic, P1 | Dx = 1.291 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 6.9171 (14) Å | Cell parameters from 2319 reflections |
| b = 7.0961 (14) Å | θ = 3.2–27.5° |
| c = 13.732 (3) Å | µ = 0.09 mm−1 |
| α = 94.79 (3)° | T = 293 K |
| β = 90.79 (3)° | Block, yellow |
| γ = 98.31 (3)° | 0.20 × 0.15 × 0.10 mm |
| V = 664.4 (2) Å3 | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2319 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.045 |
| graphite | θmax = 27.5°, θmin = 3.2° |
| phi and ω scans | h = −8→8 |
| 6475 measured reflections | k = −9→9 |
| 3006 independent reflections | l = −17→17 |
Refinement top
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.170 | H-atom parameters constrained |
| S = 1.25 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
| 3006 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
Crystal data top
| C15H14O4 | γ = 98.31 (3)° |
| Mr = 258.26 | V = 664.4 (2) Å3 |
| Triclinic, P1 | Z = 2 |
| a = 6.9171 (14) Å | Mo Kα radiation |
| b = 7.0961 (14) Å | µ = 0.09 mm−1 |
| c = 13.732 (3) Å | T = 293 K |
| α = 94.79 (3)° | 0.20 × 0.15 × 0.10 mm |
| β = 90.79 (3)° | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 2319 reflections with I > 2σ(I) |
| 6475 measured reflections | Rint = 0.045 |
| 3006 independent reflections | θmax = 27.5° |
Refinement top
| R[F2 > 2σ(F2)] = 0.055 | H-atom parameters constrained |
| wR(F2) = 0.170 | Δρmax = 0.33 e Å−3 |
| S = 1.25 | Δρmin = −0.30 e Å−3 |
| 3006 reflections | Absolute structure: ? |
| 172 parameters | Flack parameter: ? |
| 0 restraints | Rogers parameter: ? |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top| | x | y | z | Uiso*/Ueq | |
| O2 | 0.11039 (12) | 0.49034 (12) | 0.88464 (7) | 0.0556 (3) | |
| O1 | 0.26632 (13) | 0.73340 (13) | 0.79292 (7) | 0.0576 (3) | |
| C10 | 0.40643 (17) | 0.44465 (17) | 0.80181 (9) | 0.0489 (3) | |
| C9 | 0.53406 (18) | 0.32290 (19) | 0.77683 (9) | 0.0533 (3) | |
| H9A | 0.5087 | 0.2047 | 0.8024 | 0.064* | |
| O4 | 0.52765 (15) | 0.70212 (16) | 0.70801 (9) | 0.0790 (4) | |
| O3 | 0.21672 (17) | 0.21587 (14) | 0.89068 (9) | 0.0782 (4) | |
| C11 | 0.24288 (19) | 0.37290 (18) | 0.86240 (9) | 0.0534 (3) | |
| C8 | 0.70169 (18) | 0.3474 (2) | 0.71739 (10) | 0.0546 (3) | |
| H8A | 0.7361 | 0.4617 | 0.6891 | 0.066* | |
| C12 | 0.41250 (18) | 0.63399 (19) | 0.76415 (10) | 0.0537 (3) | |
| C15 | −0.0208 (2) | 0.7761 (2) | 0.87670 (11) | 0.0621 (4) | |
| H15A | −0.0951 | 0.7213 | 0.8191 | 0.093* | |
| H15B | 0.0082 | 0.9121 | 0.8745 | 0.093* | |
| H15C | −0.0953 | 0.7481 | 0.9335 | 0.093* | |
| C7 | 0.80960 (19) | 0.2062 (2) | 0.70229 (9) | 0.0569 (3) | |
| H7A | 0.7673 | 0.0944 | 0.7315 | 0.068* | |
| C5 | 0.98573 (19) | 0.2077 (2) | 0.64538 (9) | 0.0553 (3) | |
| C13 | 0.16573 (17) | 0.69346 (17) | 0.88135 (9) | 0.0503 (3) | |
| C4 | 1.06834 (19) | 0.3651 (2) | 0.59900 (11) | 0.0648 (4) | |
| H4A | 1.0124 | 0.4769 | 0.6049 | 0.078* | |
| C6 | 1.0760 (2) | 0.0447 (2) | 0.63695 (11) | 0.0726 (4) | |
| H6A | 1.0236 | −0.0620 | 0.6680 | 0.087* | |
| C14 | 0.2935 (2) | 0.7718 (2) | 0.96872 (12) | 0.0717 (4) | |
| H14A | 0.4106 | 0.7137 | 0.9673 | 0.108* | |
| H14B | 0.2248 | 0.7443 | 1.0273 | 0.108* | |
| H14C | 0.3271 | 0.9077 | 0.9675 | 0.108* | |
| C3 | 1.2336 (2) | 0.3567 (3) | 0.54389 (13) | 0.0784 (5) | |
| H3A | 1.2869 | 0.4624 | 0.5123 | 0.094* | |
| C2 | 1.3187 (2) | 0.1942 (3) | 0.53569 (14) | 0.0887 (6) | |
| H2A | 1.4286 | 0.1886 | 0.4979 | 0.106* | |
| C1 | 1.2416 (3) | 0.0393 (3) | 0.58337 (14) | 0.0903 (6) | |
| H1A | 1.3018 | −0.0700 | 0.5794 | 0.108* | |
Atomic displacement parameters (Å2) top| | U11 | U22 | U33 | U12 | U13 | U23 |
| O2 | 0.0584 (5) | 0.0430 (5) | 0.0644 (6) | 0.0006 (4) | 0.0176 (4) | 0.0074 (4) |
| O1 | 0.0619 (5) | 0.0547 (5) | 0.0613 (6) | 0.0155 (4) | 0.0176 (4) | 0.0212 (4) |
| C10 | 0.0530 (6) | 0.0473 (7) | 0.0473 (6) | 0.0056 (5) | 0.0066 (5) | 0.0115 (5) |
| C9 | 0.0593 (7) | 0.0520 (7) | 0.0500 (7) | 0.0098 (5) | 0.0023 (5) | 0.0097 (5) |
| O4 | 0.0782 (7) | 0.0716 (7) | 0.0972 (8) | 0.0208 (5) | 0.0424 (6) | 0.0429 (6) |
| O3 | 0.1022 (8) | 0.0478 (6) | 0.0891 (8) | 0.0118 (5) | 0.0430 (6) | 0.0245 (5) |
| C11 | 0.0652 (7) | 0.0439 (7) | 0.0509 (7) | 0.0035 (5) | 0.0112 (6) | 0.0082 (5) |
| C8 | 0.0546 (7) | 0.0582 (7) | 0.0525 (7) | 0.0106 (5) | 0.0027 (5) | 0.0086 (5) |
| C12 | 0.0531 (6) | 0.0531 (7) | 0.0577 (7) | 0.0087 (5) | 0.0127 (5) | 0.0180 (6) |
| C15 | 0.0607 (7) | 0.0590 (8) | 0.0679 (9) | 0.0116 (6) | 0.0127 (6) | 0.0063 (6) |
| C7 | 0.0603 (7) | 0.0609 (8) | 0.0519 (7) | 0.0148 (6) | 0.0021 (6) | 0.0098 (6) |
| C5 | 0.0556 (7) | 0.0672 (8) | 0.0463 (7) | 0.0197 (6) | −0.0027 (5) | 0.0050 (6) |
| C13 | 0.0567 (6) | 0.0423 (6) | 0.0510 (7) | 0.0014 (5) | 0.0104 (5) | 0.0081 (5) |
| C4 | 0.0582 (7) | 0.0763 (10) | 0.0642 (8) | 0.0191 (7) | 0.0015 (6) | 0.0144 (7) |
| C6 | 0.0820 (9) | 0.0768 (10) | 0.0665 (9) | 0.0339 (8) | 0.0090 (8) | 0.0096 (8) |
| C14 | 0.0797 (9) | 0.0637 (9) | 0.0678 (9) | 0.0026 (7) | −0.0088 (7) | −0.0016 (7) |
| C3 | 0.0592 (8) | 0.1082 (14) | 0.0715 (10) | 0.0144 (8) | 0.0096 (7) | 0.0236 (9) |
| C2 | 0.0677 (9) | 0.1327 (18) | 0.0731 (10) | 0.0386 (10) | 0.0170 (8) | 0.0082 (11) |
| C1 | 0.0914 (12) | 0.1067 (14) | 0.0844 (12) | 0.0537 (11) | 0.0177 (10) | 0.0057 (10) |
Geometric parameters (Å, °) top
| O2—C11 | 1.3468 (15) | C7—C5 | 1.456 (2) |
| O2—C13 | 1.4415 (14) | C7—H7A | 0.9300 |
| O1—C12 | 1.3590 (15) | C5—C4 | 1.387 (2) |
| O1—C13 | 1.4362 (15) | C5—C6 | 1.389 (2) |
| C10—C9 | 1.3501 (17) | C13—C14 | 1.4992 (19) |
| C10—C11 | 1.4702 (18) | C4—C3 | 1.385 (2) |
| C10—C12 | 1.4746 (17) | C4—H4A | 0.9300 |
| C9—C8 | 1.4256 (19) | C6—C1 | 1.374 (2) |
| C9—H9A | 0.9300 | C6—H6A | 0.9300 |
| O4—C12 | 1.1959 (16) | C14—H14A | 0.9600 |
| O3—C11 | 1.2004 (15) | C14—H14B | 0.9600 |
| C8—C7 | 1.3375 (18) | C14—H14C | 0.9600 |
| C8—H8A | 0.9300 | C3—C2 | 1.366 (2) |
| C15—C13 | 1.4955 (17) | C3—H3A | 0.9300 |
| C15—H15A | 0.9600 | C2—C1 | 1.372 (3) |
| C15—H15B | 0.9600 | C2—H2A | 0.9300 |
| C15—H15C | 0.9600 | C1—H1A | 0.9300 |
| | | |
| C11—O2—C13 | 119.15 (10) | C6—C5—C7 | 118.85 (14) |
| C12—O1—C13 | 119.85 (9) | O1—C13—O2 | 110.44 (10) |
| C9—C10—C11 | 116.66 (11) | O1—C13—C15 | 106.78 (10) |
| C9—C10—C12 | 123.71 (12) | O2—C13—C15 | 106.17 (10) |
| C11—C10—C12 | 119.36 (11) | O1—C13—C14 | 110.25 (11) |
| C10—C9—C8 | 130.02 (12) | O2—C13—C14 | 109.54 (10) |
| C10—C9—H9A | 115.0 | C15—C13—C14 | 113.55 (13) |
| C8—C9—H9A | 115.0 | C3—C4—C5 | 120.42 (15) |
| O3—C11—O2 | 118.16 (12) | C3—C4—H4A | 119.8 |
| O3—C11—C10 | 124.58 (13) | C5—C4—H4A | 119.8 |
| O2—C11—C10 | 117.22 (10) | C1—C6—C5 | 120.81 (17) |
| C7—C8—C9 | 120.10 (13) | C1—C6—H6A | 119.6 |
| C7—C8—H8A | 119.9 | C5—C6—H6A | 119.6 |
| C9—C8—H8A | 119.9 | C13—C14—H14A | 109.5 |
| O4—C12—O1 | 118.08 (11) | C13—C14—H14B | 109.5 |
| O4—C12—C10 | 126.04 (12) | H14A—C14—H14B | 109.5 |
| O1—C12—C10 | 115.79 (11) | C13—C14—H14C | 109.5 |
| C13—C15—H15A | 109.5 | H14A—C14—H14C | 109.5 |
| C13—C15—H15B | 109.5 | H14B—C14—H14C | 109.5 |
| H15A—C15—H15B | 109.5 | C2—C3—C4 | 120.37 (17) |
| C13—C15—H15C | 109.5 | C2—C3—H3A | 119.8 |
| H15A—C15—H15C | 109.5 | C4—C3—H3A | 119.8 |
| H15B—C15—H15C | 109.5 | C3—C2—C1 | 119.80 (16) |
| C8—C7—C5 | 127.42 (13) | C3—C2—H2A | 120.1 |
| C8—C7—H7A | 116.3 | C1—C2—H2A | 120.1 |
| C5—C7—H7A | 116.3 | C2—C1—C6 | 120.36 (16) |
| C4—C5—C6 | 118.21 (13) | C2—C1—H1A | 119.8 |
| C4—C5—C7 | 122.93 (13) | C6—C1—H1A | 119.8 |
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C15—H15B···O3i | 0.96 | 2.41 | 3.2991 (19) | 155 |
| C15—H15C···O3ii | 0.96 | 2.57 | 3.486 (2) | 159 |
| Symmetry codes: (i) x, y+1, z; (ii) −x, −y+1, −z+2. |
Table 1
Hydrogen-bond geometry (Å, °) top
| D—H···A | D—H | H···A | D···A | D—H···A |
| C15—H15B···O3i | 0.96 | 2.41 | 3.2991 (19) | 155 |
| C15—H15C···O3ii | 0.96 | 2.57 | 3.486 (2) | 159 |
| Symmetry codes: (i) x, y+1, z; (ii) −x, −y+1, −z+2. |
Bruker (1997). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
Casadesus, M., Coogan, M. P. & Ooi, L. L. (2006). Org. Biomol. Chem.. 58, 3822–3830.
Kuhn, N., Al-Sheikh, A. & Steimann, M. (2003). Z. Naturforsch. 58, 381–384.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Zeng, W.-L. & Jian, F.-F. (2009). Acta Cryst. E65, o2587.
Starting with its discovery and correct structural assignment, Meldrum's acid has become a widely used reagent in organic synthesis (Kuhn et al., 2003; Casadesus et al., 2006) owing to the interesting conformational features of the products. We have recently reported the crystal structure of 5-(2-fluorobenzylidene)-2,2-dimethyl-1,3-dioxane-4,6-dione (Zeng et al. 2009). As part of our search for new Meldrum's acid, the title compound (I) has been synthesized and its structure is reported herein. The molecular structure of (I) is shown in Fig. 1. The dioxane ring is in a sofa conformation with the C atom bonded to the two methyl groups forming the flap. With the exception of the flap atom and the methyl group C atoms, all other non-hydrogen atoms are essentially planar with an rms deviation of 0.067 (1)Å. The deviation of atom C13 from the mean-plane formed by O1/O2/C11/C12/C10 is 0.270 (1)Å. The crystal structure is stabilized by weak intermolecular C—H···O hydrogen bonds (Table 1).