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ISSN: 2053-2733

May 2022 issue

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Cover illustration: Structure determination for polymeric or fibrillar assemblies (e.g. helical viruses, microtubules, nucleic acids etc.) is difficult since they usually pack spontaneously into bundles and the resulting diffraction is cylindrically averaged. The cylindrical averaging can be circumvented, however, by using new high-intensity sources such as X-ray free-electron lasers to measure diffraction from single such assemblies. Arnal & Millane [Acta Cryst. (2022). A78, 249–261] describe a method for ab initio phasing of the information-rich diffraction data from 1D crystals that are Bragg sampled only along the fibril axis direction. The cover image shows simulated diffraction from a single B-DNA molecule (left) and an ab initio reconstruction of the electron density (right) using iterative projection and shrink-wrap algorithms.

advances

research papers


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The theory and algorithm are presented for the assignment of ferroelastic domains to the individual components of split Bragg peaks in high-resolution reciprocal-space maps. The formalism of mechanical compatibility of ferroelastic domains is further developed for the analysis of the geometry of the reciprocal space. The application of the algorithm to the reciprocal-space maps of tetragonal BaTiO3 and rhombohedral PbZr1−xTixO3 crystals is demonstrated.

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Information-theoretic crystallographic symmetry classifications distinguish between genuine symmetries and strong Fedorov-type pseudo­symmetries in noisy crystal patterns in two dimensions. Because these classifications require neither visual comparisons of image pairs nor subjective interpretations of `symmetry deviation quantifiers' by human beings, they enable the optimal crystallographic processing of an experimental image that results in a significantly enhanced signal-to-noise ratio of a microscopic study of a crystal.

foundations

research papers


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A Monte Carlo implementation of the expand–maximize–compress algorithm is presented and compared with the standard implementation.

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Chains of TO4n tetrahedra are represented as chain graphs in which tetrahedra are represented as vertices and the linkage between tetrahedra is represented as edges. Topologically distinct chain graphs are generated for all possible chain stoichiometries (up to a boundary number of tetrahedra) using the formalisms of graph theory, making possible the comparison of observed chain arrangements with all topologically possible chain arrangements.

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1- and 2-periodic structures are described built from single threads, or from multiple threads with parallel or collinear axes. The work has relevance to the manufacture of mechanically interlocked polymers.


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Methods for reconstructing electron densities from diffraction amplitudes alone, measured from single 1D crystals, are described and illustrated by simulation. Ab initio phasing is demonstrated using an iterative projection algorithm.

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A general formalism to determine the surface unit cell of a three-dimensional crystallographic lattice is presented.

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Organic epitaxy is studied experimentally in terms of the correlation of the involved two- and three-dimensional crystallographic lattices.

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The non-crystallographic affine group H2 is constructed as the subgroup of the affine Coxeter–Weyl group A4. It is applied on the projections of the Voronoi cells of root and weight lattices of A4 leading to fivefold tessellations of the plane, which could be useful in the classification of quasicrystals.

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